Wall clock time and date at job start Wed Apr 1 2020 02:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46875 * 2 1 4 4 C 1.52999 * 109.47524 * 120.00190 * 2 1 3 5 5 N 1.46494 * 109.47192 * 175.00258 * 4 2 1 6 6 C 1.34781 * 119.99803 * 180.02562 * 5 4 2 7 7 O 1.21278 * 119.99809 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99726 * 179.97438 * 6 5 4 9 9 S 1.81003 * 109.46716 * 179.97438 * 8 6 5 10 10 C 1.76204 * 99.99619 * 180.02562 * 9 8 6 11 11 H 1.07999 * 120.00052 * 359.97438 * 10 9 8 12 12 C 1.38800 * 119.99620 * 179.97438 * 10 9 8 13 13 N 1.31632 * 120.00193 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.46837 * 90.00332 * 14 12 10 16 16 H 1.48502 * 109.46979 * 210.00242 * 14 12 10 17 17 H 1.48499 * 109.47083 * 330.00466 * 14 12 10 18 18 N 1.46499 * 109.47022 * 240.00416 * 2 1 3 19 19 C 1.34784 * 119.99971 * 84.99732 * 18 2 1 20 20 O 1.21274 * 119.99897 * 359.72827 * 19 18 2 21 21 C 1.50695 * 119.99635 * 179.97438 * 19 18 2 22 22 C 1.53002 * 109.47004 * 179.97438 * 21 19 18 23 23 H 1.09002 * 110.21453 * 306.93336 * 22 21 19 24 24 C 1.54476 * 110.24865 * 185.00133 * 22 21 19 25 25 C 1.54625 * 101.76701 * 215.58687 * 24 22 21 26 26 C 1.51289 * 104.19737 * 24.79397 * 25 24 22 27 27 O 1.21272 * 124.94208 * 163.74864 * 26 25 24 28 28 N 1.34422 * 110.11439 * 343.75187 * 26 25 24 29 29 H 1.09005 * 109.47314 * 299.99734 * 1 2 3 30 30 H 1.09001 * 109.47831 * 59.99682 * 1 2 3 31 31 H 1.08996 * 109.47227 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46859 * 295.00018 * 4 2 1 33 33 H 1.09000 * 109.46643 * 54.99720 * 4 2 1 34 34 H 0.97004 * 120.00480 * 359.97438 * 5 4 2 35 35 H 1.08993 * 109.47295 * 299.99922 * 8 6 5 36 36 H 1.09001 * 109.46764 * 60.00282 * 8 6 5 37 37 H 0.96997 * 119.99819 * 179.97438 * 13 12 10 38 38 H 0.96999 * 119.99984 * 264.99579 * 18 2 1 39 39 H 1.09005 * 109.47403 * 300.00056 * 21 19 18 40 40 H 1.09002 * 109.47422 * 60.00295 * 21 19 18 41 41 H 1.09004 * 110.96941 * 333.70058 * 24 22 21 42 42 H 1.08995 * 110.97150 * 97.46702 * 24 22 21 43 43 H 1.08997 * 110.49156 * 143.47340 * 25 24 22 44 44 H 1.09004 * 110.48706 * 266.12229 * 25 24 22 45 45 H 0.96988 * 124.34924 * 179.56787 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8263 1.1905 6 6 4.1730 -1.4291 2.1906 7 8 3.5699 -1.8842 3.1393 8 6 5.6750 -1.5377 2.1299 9 16 6.2783 -2.3908 3.6078 10 6 8.0101 -2.3778 3.2829 11 1 8.3862 -1.9253 2.3773 12 6 8.8908 -2.9491 4.1910 13 7 8.4323 -3.5010 5.2945 14 14 10.7267 -2.9359 3.8463 15 1 11.3284 -1.7037 4.4162 16 1 11.3559 -4.1280 4.4694 17 1 10.9551 -2.9654 2.3793 18 7 2.0183 -0.6905 -1.1962 19 6 2.1469 -0.0181 -2.3572 20 8 1.8538 1.1574 -2.4128 21 6 2.6498 -0.7283 -3.5875 22 6 2.7005 0.2547 -4.7589 23 1 1.7348 0.7454 -4.8808 24 6 3.0936 -0.4821 -6.0585 25 6 3.9521 0.5839 -6.7779 26 6 4.4698 1.4605 -5.6588 27 8 5.3951 2.2382 -5.7571 28 7 3.7548 1.2519 -4.5398 29 1 -0.3634 0.5138 0.8900 30 1 -0.3635 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.7517 -0.1583 2.1369 33 1 1.6054 -1.7198 1.2950 34 1 3.9824 -0.4627 0.4315 35 1 5.9630 -2.1004 1.2420 36 1 6.1098 -0.5392 2.0842 37 1 9.0477 -3.9006 5.9289 38 1 2.2490 -1.6317 -1.1527 39 1 3.6491 -1.1201 -3.3980 40 1 1.9776 -1.5506 -3.8326 41 1 3.6816 -1.3733 -5.8390 42 1 2.2110 -0.7339 -6.6464 43 1 4.7801 0.1129 -7.3077 44 1 3.3394 1.1661 -7.4662 45 1 3.9154 1.7022 -3.6959 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688123776.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:02 Heat of formation + Delta-G solvation = -123.211715 kcal Electronic energy + Delta-G solvation = -26889.411156 eV Core-core repulsion = 22839.455329 eV Total energy + Delta-G solvation = -4049.955827 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.05054 -40.06100 -39.16311 -37.13464 -36.41912 -33.81497 -32.46325 -32.28281 -31.67985 -30.77299 -29.44353 -26.24072 -25.82780 -25.39243 -22.44723 -21.52422 -21.00757 -20.73265 -20.43707 -18.06404 -17.80727 -17.41075 -17.02151 -16.75448 -16.34119 -15.88608 -15.60210 -15.23732 -15.04067 -14.83303 -14.43304 -14.16306 -14.09227 -13.82091 -13.57946 -13.38365 -13.18780 -13.08285 -13.01203 -12.95887 -12.63089 -12.40021 -12.24807 -11.97653 -11.87010 -11.55750 -11.38599 -11.09030 -11.05742 -10.79042 -10.30429 -10.17851 -9.85939 -9.63859 -9.49368 -9.46960 -9.11407 -9.03944 -8.29160 -6.54792 -6.25234 -3.96370 2.14453 2.29460 2.61420 2.94946 2.99522 3.01917 3.20551 3.25788 3.29449 3.62577 3.80675 3.92083 4.12423 4.17095 4.23338 4.36311 4.57128 4.68085 4.72141 4.75515 4.85965 4.90360 5.06560 5.10159 5.17021 5.20235 5.24463 5.30346 5.33353 5.45005 5.52339 5.58221 5.67124 5.80706 5.81657 6.01831 6.07221 6.44765 6.47626 6.73482 6.99621 7.54822 7.56928 7.72470 7.95098 8.31767 8.48908 9.20338 10.82141 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.009631 B = 0.002338 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2906.610711 B =11972.376734 C =14380.106569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.131 3.869 3 H 0.096 0.904 4 C 0.113 3.887 5 N -0.740 5.740 6 C 0.532 3.468 7 O -0.515 6.515 8 C -0.154 4.154 9 S -0.059 6.059 10 C -0.536 4.536 11 H 0.073 0.927 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 N -0.725 5.725 19 C 0.513 3.487 20 O -0.537 6.537 21 C -0.156 4.156 22 C 0.148 3.852 23 H 0.091 0.909 24 C -0.130 4.130 25 C -0.157 4.157 26 C 0.516 3.484 27 O -0.537 6.537 28 N -0.719 5.719 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.398 0.602 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.269 0.731 38 H 0.405 0.595 39 H 0.105 0.895 40 H 0.112 0.888 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.704 4.040 -23.118 29.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.026 3.974 3 H 0.114 0.886 4 C -0.012 4.012 5 N -0.396 5.396 6 C 0.318 3.682 7 O -0.389 6.389 8 C -0.305 4.305 9 S 0.167 5.833 10 C -0.684 4.684 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.202 1.202 16 H -0.207 1.207 17 H -0.197 1.197 18 N -0.378 5.378 19 C 0.299 3.701 20 O -0.414 6.414 21 C -0.197 4.197 22 C 0.042 3.958 23 H 0.109 0.891 24 C -0.168 4.168 25 C -0.197 4.197 26 C 0.302 3.698 27 O -0.413 6.413 28 N -0.376 5.376 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.232 0.768 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.239 0.761 39 H 0.123 0.877 40 H 0.130 0.870 41 H 0.105 0.895 42 H 0.112 0.888 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -18.426 4.385 -21.537 28.681 hybrid contribution 2.160 0.344 -1.129 2.462 sum -16.266 4.729 -22.666 28.296 Atomic orbital electron populations 1.22093 0.93932 1.02696 1.03142 1.21267 0.95014 0.97851 0.83270 0.88607 1.21614 0.81189 1.01327 0.97075 1.45998 1.06743 1.62136 1.24692 1.20337 0.89548 0.76697 0.81578 1.90713 1.69850 1.45942 1.32392 1.23532 0.93428 1.05755 1.07735 1.85393 1.04704 1.72982 1.20197 1.22859 0.91465 1.44422 1.09685 0.90925 1.24996 0.99634 0.94487 0.94447 1.70014 1.35446 1.35426 1.09383 0.86164 0.82845 0.77888 0.78592 1.20238 1.20724 1.19673 1.46177 1.67465 1.14468 1.09695 1.20656 0.77367 0.87426 0.84628 1.90744 1.49774 1.15951 1.84928 1.22149 1.04613 0.99876 0.93018 1.21414 0.92491 0.88442 0.93500 0.89103 1.22727 1.01071 0.98128 0.94909 1.22358 1.01791 0.97726 0.97825 1.20901 0.81432 0.82469 0.85019 1.90776 1.28816 1.38220 1.83525 1.46340 1.33612 1.43583 1.14034 0.91022 0.91615 0.91987 0.89944 0.90878 0.76799 0.89272 0.89221 0.92148 0.76062 0.87661 0.86982 0.89467 0.88804 0.87896 0.87735 0.74619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.02 9.48 37.16 0.35 -0.66 16 2 C 0.13 0.94 2.73 -67.93 -0.19 0.75 16 3 H 0.10 0.83 7.58 -51.92 -0.39 0.44 16 4 C 0.11 1.06 5.23 -4.05 -0.02 1.04 16 5 N -0.74 -8.58 5.39 -60.30 -0.32 -8.91 16 6 C 0.53 9.22 7.85 -10.98 -0.09 9.13 16 7 O -0.52 -11.03 15.86 5.56 0.09 -10.94 16 8 C -0.15 -2.97 6.16 36.01 0.22 -2.75 16 9 S -0.06 -1.57 20.57 -107.50 -2.21 -3.79 16 10 C -0.54 -15.08 9.50 30.94 0.29 -14.78 16 11 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 12 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 13 N -0.87 -25.90 13.22 55.49 0.73 -25.16 16 14 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 17 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 18 N -0.73 -4.13 4.52 -53.81 -0.24 -4.38 16 19 C 0.51 3.35 7.62 -10.98 -0.08 3.27 16 20 O -0.54 -5.41 14.71 5.56 0.08 -5.33 16 21 C -0.16 -0.55 5.30 -27.88 -0.15 -0.70 16 22 C 0.15 0.70 3.00 -67.01 -0.20 0.50 16 23 H 0.09 0.48 7.91 -51.93 -0.41 0.07 16 24 C -0.13 -0.35 6.69 -25.10 -0.17 -0.52 16 25 C -0.16 -0.81 6.86 -26.74 -0.18 -0.99 16 26 C 0.52 5.04 8.43 -10.86 -0.09 4.95 16 27 O -0.54 -7.94 18.03 5.56 0.10 -7.84 16 28 N -0.72 -5.76 5.62 -52.76 -0.30 -6.05 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.40 3.79 8.14 -40.82 -0.33 3.46 16 35 H 0.09 1.57 8.14 -51.92 -0.42 1.14 16 36 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 37 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.40 1.72 8.60 -40.82 -0.35 1.37 16 39 H 0.11 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.11 0.11 8.14 -51.93 -0.42 -0.31 16 41 H 0.09 0.17 7.91 -51.93 -0.41 -0.24 16 42 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 43 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.41 3.82 8.13 -40.82 -0.33 3.49 16 LS Contribution 395.23 15.07 5.96 5.96 Total: -1.00 -38.65 395.23 -8.38 -47.03 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -6.85 Total: 1.95 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -0.40 Total: 1.22 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: -0.13 Total: -44.50 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: 0.27 Total: -24.12 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -38.65 -8.38 -47.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688123776.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.180 kcal (2) G-P(sol) polarization free energy of solvation -38.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds