Wall clock time and date at job start Wed Apr 1 2020 02:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47528 * 2 1 4 4 C 1.53006 * 109.47184 * 119.99731 * 2 1 3 5 5 N 1.46500 * 109.47373 * 175.00014 * 4 2 1 6 6 C 1.34769 * 120.00241 * 180.02562 * 5 4 2 7 7 O 1.21282 * 119.99850 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00466 * 179.97438 * 6 5 4 9 9 S 1.81000 * 109.47238 * 179.97438 * 8 6 5 10 10 C 1.76205 * 99.99610 * 179.97438 * 9 8 6 11 11 H 1.07998 * 120.00040 * 0.02562 * 10 9 8 12 12 C 1.38796 * 119.99527 * 179.97438 * 10 9 8 13 13 N 1.31625 * 120.00398 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99780 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47210 * 59.99938 * 14 12 10 16 16 H 1.48498 * 109.47318 * 180.02562 * 14 12 10 17 17 H 1.48510 * 109.46991 * 299.99949 * 14 12 10 18 18 N 1.46506 * 109.47343 * 239.99514 * 2 1 3 19 19 C 1.34775 * 119.99644 * 85.00090 * 18 2 1 20 20 O 1.21274 * 120.00179 * 0.02562 * 19 18 2 21 21 C 1.50699 * 119.99584 * 180.02562 * 19 18 2 22 22 C 1.53005 * 109.47210 * 179.97438 * 21 19 18 23 23 H 1.09002 * 110.21258 * 55.47229 * 22 21 19 24 24 C 1.54476 * 110.24952 * 177.49633 * 22 21 19 25 25 C 1.54627 * 101.76426 * 144.41562 * 24 22 21 26 26 C 1.51282 * 104.19593 * 335.20171 * 25 24 22 27 27 O 1.21280 * 124.94172 * 196.27099 * 26 25 24 28 28 N 1.34421 * 110.11499 * 16.25462 * 26 25 24 29 29 H 1.08996 * 109.46935 * 300.00089 * 1 2 3 30 30 H 1.09002 * 109.46911 * 60.00380 * 1 2 3 31 31 H 1.09005 * 109.46713 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47107 * 54.99967 * 4 2 1 33 33 H 1.09000 * 109.46866 * 295.00076 * 4 2 1 34 34 H 0.97003 * 119.99532 * 359.97438 * 5 4 2 35 35 H 1.09004 * 109.46923 * 59.99646 * 8 6 5 36 36 H 1.09004 * 109.46818 * 300.00196 * 8 6 5 37 37 H 0.97006 * 120.00587 * 179.97438 * 13 12 10 38 38 H 0.97001 * 119.99904 * 265.00552 * 18 2 1 39 39 H 1.08997 * 109.47211 * 299.99596 * 21 19 18 40 40 H 1.08999 * 109.47518 * 60.00001 * 21 19 18 41 41 H 1.08998 * 110.97132 * 262.53903 * 24 22 21 42 42 H 1.09002 * 110.96806 * 26.30026 * 24 22 21 43 43 H 1.09005 * 110.48367 * 216.52296 * 25 24 22 44 44 H 1.09000 * 110.48622 * 93.88507 * 25 24 22 45 45 H 0.96998 * 124.34802 * 180.38199 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8264 1.1907 6 6 4.1730 -1.4291 2.1908 7 8 3.5699 -1.8840 3.1396 8 6 5.6749 -1.5378 2.1302 9 16 6.2781 -2.3908 3.6082 10 6 8.0098 -2.3793 3.2827 11 1 8.3860 -1.9267 2.3772 12 6 8.8904 -2.9509 4.1906 13 7 8.4319 -3.5021 5.2945 14 14 10.7263 -2.9380 3.8459 15 1 11.1972 -1.5350 3.7240 16 1 11.4440 -3.6065 4.9608 17 1 10.9970 -3.6630 2.5783 18 7 2.0184 -0.6907 -1.1961 19 6 2.1471 -0.0184 -2.3571 20 8 1.8591 1.1584 -2.4115 21 6 2.6490 -0.7291 -3.5876 22 6 2.7000 0.2538 -4.7591 23 1 3.3062 1.1210 -4.4970 24 6 3.2716 -0.4405 -6.0150 25 6 2.4505 0.2244 -7.1441 26 6 1.1771 0.6733 -6.4617 27 8 0.1549 0.9856 -7.0348 28 7 1.3434 0.6753 -5.1278 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6054 -1.7198 1.2953 33 1 1.7516 -0.1582 2.1370 34 1 3.9824 -0.4628 0.4316 35 1 6.1099 -0.5393 2.0844 36 1 5.9629 -2.1007 1.2423 37 1 9.0473 -3.9019 5.9289 38 1 2.2490 -1.6319 -1.1525 39 1 3.6481 -1.1215 -3.3985 40 1 1.9761 -1.5509 -3.8325 41 1 4.3346 -0.2278 -6.1286 42 1 3.0916 -1.5150 -5.9827 43 1 2.2281 -0.4976 -7.9299 44 1 2.9870 1.0809 -7.5524 45 1 0.6553 0.9237 -4.4909 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688123777.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:05 Heat of formation + Delta-G solvation = -123.470597 kcal Electronic energy + Delta-G solvation = -26741.200835 eV Core-core repulsion = 22691.233782 eV Total energy + Delta-G solvation = -4049.967053 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.07937 -40.07439 -39.17423 -37.16106 -36.42929 -33.82502 -32.48317 -32.29580 -31.70310 -30.78093 -29.45628 -26.25084 -25.84090 -25.40803 -22.46083 -21.53285 -21.00743 -20.76950 -20.45124 -18.08593 -17.78213 -17.43490 -17.13806 -16.67486 -16.36234 -15.85773 -15.73150 -15.22257 -14.97496 -14.85363 -14.51145 -14.20546 -14.09102 -13.85761 -13.58297 -13.32511 -13.20355 -13.10287 -13.02715 -12.99737 -12.64680 -12.40286 -12.24830 -11.98606 -11.88232 -11.57789 -11.38794 -11.10280 -11.08352 -10.81921 -10.31737 -10.21364 -9.88783 -9.64621 -9.51395 -9.49287 -9.12652 -9.04992 -8.31043 -6.56590 -6.26823 -3.98202 2.13909 2.24655 2.60853 2.93534 2.98344 2.98676 3.19240 3.23410 3.26123 3.60942 3.79623 3.90691 4.11646 4.15161 4.23348 4.35186 4.55883 4.67329 4.71108 4.73829 4.87875 4.90890 5.05252 5.08322 5.17112 5.18598 5.24584 5.30143 5.32861 5.44256 5.51547 5.57536 5.66601 5.79220 5.81313 6.01425 6.04777 6.43219 6.44169 6.69352 6.99189 7.53209 7.55218 7.71887 7.90629 8.29418 8.47921 9.18341 10.80449 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.013853 B = 0.001968 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.712281 B =14226.257684 C =16006.948206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.131 3.869 3 H 0.096 0.904 4 C 0.113 3.887 5 N -0.740 5.740 6 C 0.532 3.468 7 O -0.515 6.515 8 C -0.154 4.154 9 S -0.059 6.059 10 C -0.537 4.537 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 N -0.725 5.725 19 C 0.513 3.487 20 O -0.538 6.538 21 C -0.156 4.156 22 C 0.147 3.853 23 H 0.092 0.908 24 C -0.130 4.130 25 C -0.157 4.157 26 C 0.516 3.484 27 O -0.540 6.540 28 N -0.718 5.718 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.398 0.602 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.269 0.731 38 H 0.405 0.595 39 H 0.114 0.886 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.871 5.411 -21.659 25.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.026 3.974 3 H 0.114 0.886 4 C -0.012 4.012 5 N -0.395 5.395 6 C 0.318 3.682 7 O -0.389 6.389 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.685 4.685 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.502 5.502 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 N -0.378 5.378 19 C 0.300 3.700 20 O -0.414 6.414 21 C -0.196 4.196 22 C 0.041 3.959 23 H 0.110 0.890 24 C -0.168 4.168 25 C -0.197 4.197 26 C 0.302 3.698 27 O -0.417 6.417 28 N -0.375 5.375 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.232 0.768 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.239 0.761 39 H 0.132 0.868 40 H 0.121 0.879 41 H 0.114 0.886 42 H 0.105 0.895 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -13.505 5.538 -20.289 24.994 hybrid contribution 1.992 0.302 -1.179 2.335 sum -11.513 5.841 -21.468 25.051 Atomic orbital electron populations 1.22101 0.93961 1.02720 1.03151 1.21270 0.94986 0.97864 0.83263 0.88552 1.21616 0.81181 1.01337 0.97068 1.45990 1.06742 1.62130 1.24679 1.20339 0.89554 0.76720 0.81594 1.90717 1.69854 1.45928 1.32402 1.23530 0.93420 1.05729 1.07737 1.85416 1.04669 1.73010 1.20158 1.22814 0.91493 1.44538 1.09691 0.90971 1.24994 0.99620 0.94512 0.94437 1.70000 1.35585 1.35307 1.09327 0.86223 0.82719 0.78496 0.78052 1.19920 1.20792 1.19931 1.46177 1.67440 1.14462 1.09701 1.20653 0.77446 0.87376 0.84563 1.90740 1.49905 1.15833 1.84969 1.22147 1.04814 0.99865 0.92786 1.21430 0.84122 0.96952 0.93414 0.89004 1.22730 1.00889 1.00756 0.92453 1.22360 0.95114 1.03017 0.99217 1.20917 0.89352 0.76504 0.83036 1.90764 1.32150 1.49659 1.69118 1.46358 1.14785 1.68484 1.07843 0.90981 0.91654 0.91989 0.90886 0.89937 0.76788 0.89230 0.89260 0.92075 0.76053 0.86757 0.87886 0.88637 0.89512 0.87942 0.87666 0.74632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 9.48 37.16 0.35 -0.71 16 2 C 0.13 0.94 2.73 -67.92 -0.19 0.75 16 3 H 0.10 0.83 7.58 -51.93 -0.39 0.43 16 4 C 0.11 1.05 5.23 -4.04 -0.02 1.02 16 5 N -0.74 -8.30 5.39 -60.29 -0.32 -8.63 16 6 C 0.53 9.00 7.85 -10.99 -0.09 8.92 16 7 O -0.52 -10.91 15.86 5.56 0.09 -10.82 16 8 C -0.15 -2.88 6.16 36.01 0.22 -2.66 16 9 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 10 C -0.54 -14.82 9.50 30.94 0.29 -14.53 16 11 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 12 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 13 N -0.87 -25.56 13.22 55.49 0.73 -24.83 16 14 Si 0.92 20.81 29.55 -169.99 -5.02 15.79 16 15 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 18 N -0.73 -4.12 4.52 -53.80 -0.24 -4.36 16 19 C 0.51 3.35 7.60 -10.99 -0.08 3.26 16 20 O -0.54 -5.40 14.54 5.56 0.08 -5.32 16 21 C -0.16 -0.54 5.32 -27.88 -0.15 -0.69 16 22 C 0.15 0.69 3.02 -67.01 -0.20 0.49 16 23 H 0.09 0.50 7.99 -51.93 -0.42 0.09 16 24 C -0.13 -0.36 6.69 -25.10 -0.17 -0.52 16 25 C -0.16 -0.76 6.86 -26.74 -0.18 -0.94 16 26 C 0.52 4.72 8.43 -10.86 -0.09 4.63 16 27 O -0.54 -7.48 18.03 5.56 0.10 -7.38 16 28 N -0.72 -5.40 5.60 -52.76 -0.30 -5.69 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.40 3.56 8.14 -40.82 -0.33 3.23 16 35 H 0.09 1.57 8.14 -51.91 -0.42 1.15 16 36 H 0.09 1.51 8.14 -51.92 -0.42 1.08 16 37 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.40 1.71 8.60 -40.82 -0.35 1.36 16 39 H 0.11 0.17 8.14 -51.93 -0.42 -0.26 16 40 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 42 H 0.09 0.15 7.91 -51.93 -0.41 -0.26 16 43 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.41 3.57 7.89 -40.82 -0.32 3.25 16 LS Contribution 394.88 15.07 5.95 5.95 Total: -1.00 -38.01 394.88 -8.38 -46.40 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -6.84 Total: 1.67 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -0.40 Total: 0.98 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: -0.13 Total: -43.51 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: 0.27 Total: -23.53 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -38.01 -8.38 -46.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688123777.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.071 kcal (2) G-P(sol) polarization free energy of solvation -38.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds