Wall clock time and date at job start Wed Apr 1 2020 02:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47528 * 2 1 4 4 C 1.53006 * 109.47184 * 119.99731 * 2 1 3 5 5 N 1.46500 * 109.47373 * 175.00014 * 4 2 1 6 6 C 1.34769 * 120.00241 * 180.02562 * 5 4 2 7 7 O 1.21282 * 119.99850 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00466 * 179.97438 * 6 5 4 9 9 S 1.81000 * 109.47238 * 179.97438 * 8 6 5 10 10 C 1.76205 * 99.99610 * 179.97438 * 9 8 6 11 11 H 1.07998 * 120.00040 * 0.02562 * 10 9 8 12 12 C 1.38796 * 119.99527 * 179.97438 * 10 9 8 13 13 N 1.31625 * 120.00398 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99780 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47210 * 59.99938 * 14 12 10 16 16 H 1.48498 * 109.47318 * 180.02562 * 14 12 10 17 17 H 1.48510 * 109.46991 * 299.99949 * 14 12 10 18 18 N 1.46506 * 109.47343 * 239.99514 * 2 1 3 19 19 C 1.34775 * 119.99644 * 85.00090 * 18 2 1 20 20 O 1.21274 * 120.00179 * 0.02562 * 19 18 2 21 21 C 1.50699 * 119.99584 * 180.02562 * 19 18 2 22 22 C 1.53005 * 109.47210 * 179.97438 * 21 19 18 23 23 H 1.09002 * 110.21258 * 55.47229 * 22 21 19 24 24 C 1.54476 * 110.24952 * 177.49633 * 22 21 19 25 25 C 1.54627 * 101.76426 * 144.41562 * 24 22 21 26 26 C 1.51282 * 104.19593 * 335.20171 * 25 24 22 27 27 O 1.21280 * 124.94172 * 196.27099 * 26 25 24 28 28 N 1.34421 * 110.11499 * 16.25462 * 26 25 24 29 29 H 1.08996 * 109.46935 * 300.00089 * 1 2 3 30 30 H 1.09002 * 109.46911 * 60.00380 * 1 2 3 31 31 H 1.09005 * 109.46713 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47107 * 54.99967 * 4 2 1 33 33 H 1.09000 * 109.46866 * 295.00076 * 4 2 1 34 34 H 0.97003 * 119.99532 * 359.97438 * 5 4 2 35 35 H 1.09004 * 109.46923 * 59.99646 * 8 6 5 36 36 H 1.09004 * 109.46818 * 300.00196 * 8 6 5 37 37 H 0.97006 * 120.00587 * 179.97438 * 13 12 10 38 38 H 0.97001 * 119.99904 * 265.00552 * 18 2 1 39 39 H 1.08997 * 109.47211 * 299.99596 * 21 19 18 40 40 H 1.08999 * 109.47518 * 60.00001 * 21 19 18 41 41 H 1.08998 * 110.97132 * 262.53903 * 24 22 21 42 42 H 1.09002 * 110.96806 * 26.30026 * 24 22 21 43 43 H 1.09005 * 110.48367 * 216.52296 * 25 24 22 44 44 H 1.09000 * 110.48622 * 93.88507 * 25 24 22 45 45 H 0.96998 * 124.34802 * 180.38199 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8264 1.1907 6 6 4.1730 -1.4291 2.1908 7 8 3.5699 -1.8840 3.1396 8 6 5.6749 -1.5378 2.1302 9 16 6.2781 -2.3908 3.6082 10 6 8.0098 -2.3793 3.2827 11 1 8.3860 -1.9267 2.3772 12 6 8.8904 -2.9509 4.1906 13 7 8.4319 -3.5021 5.2945 14 14 10.7263 -2.9380 3.8459 15 1 11.1972 -1.5350 3.7240 16 1 11.4440 -3.6065 4.9608 17 1 10.9970 -3.6630 2.5783 18 7 2.0184 -0.6907 -1.1961 19 6 2.1471 -0.0184 -2.3571 20 8 1.8591 1.1584 -2.4115 21 6 2.6490 -0.7291 -3.5876 22 6 2.7000 0.2538 -4.7591 23 1 3.3062 1.1210 -4.4970 24 6 3.2716 -0.4405 -6.0150 25 6 2.4505 0.2244 -7.1441 26 6 1.1771 0.6733 -6.4617 27 8 0.1549 0.9856 -7.0348 28 7 1.3434 0.6753 -5.1278 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6054 -1.7198 1.2953 33 1 1.7516 -0.1582 2.1370 34 1 3.9824 -0.4628 0.4316 35 1 6.1099 -0.5393 2.0844 36 1 5.9629 -2.1007 1.2423 37 1 9.0473 -3.9019 5.9289 38 1 2.2490 -1.6319 -1.1525 39 1 3.6481 -1.1215 -3.3985 40 1 1.9761 -1.5509 -3.8325 41 1 4.3346 -0.2278 -6.1286 42 1 3.0916 -1.5150 -5.9827 43 1 2.2281 -0.4976 -7.9299 44 1 2.9870 1.0809 -7.5524 45 1 0.6553 0.9237 -4.4909 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688123777.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:04 Heat of formation + Delta-G solvation = -154.727539 kcal Electronic energy + Delta-G solvation = -26742.556238 eV Core-core repulsion = 22691.233782 eV Total energy + Delta-G solvation = -4051.322456 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.62008 -40.87343 -40.25823 -37.88690 -37.19186 -34.82159 -34.55957 -32.92110 -32.11747 -31.44981 -30.66883 -27.72106 -26.89414 -26.30393 -22.97057 -22.03606 -21.73472 -21.56903 -21.28495 -19.83808 -18.37164 -18.20998 -17.74148 -17.64359 -17.41722 -16.86322 -16.81040 -16.37559 -16.27370 -15.83610 -15.62071 -15.13417 -14.82335 -14.77489 -14.50927 -14.28914 -14.18378 -13.86392 -13.77304 -13.58389 -13.39843 -13.24964 -13.14921 -12.99034 -12.84583 -12.66124 -12.59312 -12.32091 -12.06234 -11.90670 -11.72581 -11.10988 -10.98382 -10.94422 -10.85377 -10.25337 -10.18956 -10.14704 -10.09587 -8.64372 -8.32693 -6.10475 1.28600 1.45472 1.48786 1.57568 1.58099 1.61706 1.65282 2.09919 2.28121 2.32311 2.45302 3.01573 3.33871 3.40857 3.54588 3.57473 3.82719 3.92386 3.97728 4.05947 4.24333 4.26329 4.32631 4.40835 4.45700 4.53757 4.57118 4.67696 4.72654 4.75721 4.88687 4.92038 4.98027 5.14520 5.21574 5.27186 5.38017 5.43748 5.47530 5.86397 6.08178 6.21426 6.45778 6.53145 7.08829 7.21707 7.22909 7.26295 8.75954 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.013853 B = 0.001968 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.712281 B =14226.257684 C =16006.948206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.143 3.857 3 H 0.085 0.915 4 C 0.116 3.884 5 N -0.711 5.711 6 C 0.536 3.464 7 O -0.564 6.564 8 C -0.130 4.130 9 S -0.152 6.152 10 C -0.546 4.546 11 H 0.084 0.916 12 C 0.013 3.987 13 N -0.911 5.911 14 Si 0.997 3.003 15 H -0.263 1.263 16 H -0.281 1.281 17 H -0.260 1.260 18 N -0.718 5.718 19 C 0.511 3.489 20 O -0.577 6.577 21 C -0.147 4.147 22 C 0.140 3.860 23 H 0.085 0.915 24 C -0.116 4.116 25 C -0.151 4.151 26 C 0.502 3.498 27 O -0.600 6.600 28 N -0.718 5.718 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.414 0.586 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.270 0.730 38 H 0.415 0.585 39 H 0.146 0.854 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.104 0.896 43 H 0.111 0.889 44 H 0.115 0.885 45 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.025 5.028 -23.810 26.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.038 3.962 3 H 0.103 0.897 4 C -0.008 4.008 5 N -0.366 5.366 6 C 0.322 3.678 7 O -0.442 6.442 8 C -0.281 4.281 9 S 0.075 5.925 10 C -0.693 4.693 11 H 0.102 0.898 12 C -0.192 4.192 13 N -0.548 5.548 14 Si 0.818 3.182 15 H -0.188 1.188 16 H -0.207 1.207 17 H -0.184 1.184 18 N -0.371 5.371 19 C 0.299 3.701 20 O -0.456 6.456 21 C -0.187 4.187 22 C 0.035 3.965 23 H 0.103 0.897 24 C -0.154 4.154 25 C -0.191 4.191 26 C 0.290 3.710 27 O -0.482 6.482 28 N -0.371 5.371 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.251 0.749 35 H 0.124 0.876 36 H 0.133 0.867 37 H 0.079 0.921 38 H 0.252 0.748 39 H 0.164 0.836 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.123 0.877 43 H 0.130 0.870 44 H 0.133 0.867 45 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -11.632 5.151 -22.474 25.824 hybrid contribution 1.299 0.504 -0.543 1.495 sum -10.333 5.656 -23.016 25.856 Atomic orbital electron populations 1.22054 0.93367 1.03203 1.02877 1.21026 0.95257 0.97005 0.82921 0.89680 1.21706 0.79475 1.01741 0.97921 1.45677 1.07619 1.59867 1.23396 1.20028 0.88839 0.76945 0.82026 1.90712 1.70392 1.48481 1.34587 1.23372 0.94716 1.05694 1.04327 1.85602 1.05808 1.75016 1.26051 1.23172 0.91718 1.44344 1.10098 0.89782 1.26115 1.05140 0.93891 0.94056 1.70172 1.37433 1.36556 1.10604 0.85027 0.75856 0.79011 0.78257 1.18793 1.20673 1.18427 1.46104 1.67032 1.14868 1.09078 1.21224 0.76601 0.86969 0.85321 1.90737 1.51593 1.17733 1.85550 1.22187 1.06761 0.99374 0.90361 1.21659 0.82414 0.97372 0.95026 0.89744 1.22786 1.01614 1.01273 0.89727 1.22403 0.93040 1.03761 0.99921 1.21747 0.89954 0.75642 0.83646 1.90718 1.34691 1.52490 1.70337 1.46566 1.15765 1.67417 1.07333 0.90600 0.92614 0.91112 0.90505 0.90700 0.74943 0.87562 0.86718 0.92058 0.74806 0.83600 0.86309 0.86217 0.87741 0.87023 0.86681 0.75759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.48 71.98 0.68 -1.19 16 2 C 0.14 1.81 2.73 44.99 0.12 1.93 16 3 H 0.09 1.35 7.58 -2.39 -0.02 1.33 16 4 C 0.12 1.95 5.23 86.38 0.45 2.40 16 5 N -0.71 -14.30 5.39 -463.05 -2.49 -16.79 16 6 C 0.54 17.42 7.85 87.66 0.69 18.11 16 7 O -0.56 -23.93 15.86 -3.04 -0.05 -23.98 16 8 C -0.13 -4.65 6.16 71.24 0.44 -4.21 16 9 S -0.15 -8.04 20.57 -56.49 -1.16 -9.20 16 10 C -0.55 -29.87 9.50 67.95 0.65 -29.22 16 11 H 0.08 4.22 7.80 -2.91 -0.02 4.20 16 12 C 0.01 0.70 5.49 84.86 0.47 1.17 16 13 N -0.91 -54.61 13.22 21.65 0.29 -54.32 16 14 Si 1.00 42.00 29.55 68.60 2.03 44.03 16 15 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 16 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 17 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 18 N -0.72 -6.31 4.52 -442.52 -2.00 -8.31 16 19 C 0.51 5.51 7.60 87.66 0.67 6.18 16 20 O -0.58 -11.02 14.54 -3.01 -0.04 -11.07 16 21 C -0.15 -0.51 5.32 29.85 0.16 -0.35 16 22 C 0.14 0.97 3.02 45.44 0.14 1.11 16 23 H 0.08 0.75 7.99 -2.39 -0.02 0.73 16 24 C -0.12 -0.20 6.69 31.65 0.21 0.01 16 25 C -0.15 -1.16 6.86 30.59 0.21 -0.95 16 26 C 0.50 9.14 8.43 87.90 0.74 9.88 16 27 O -0.60 -17.48 18.03 -3.03 -0.05 -17.53 16 28 N -0.72 -10.37 5.60 -439.44 -2.46 -12.83 16 29 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.73 8.14 -2.38 -0.02 0.72 16 32 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.41 6.00 8.14 -92.71 -0.75 5.25 16 35 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 36 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 37 H 0.27 15.12 8.31 -92.70 -0.77 14.35 16 38 H 0.42 2.10 8.60 -92.71 -0.80 1.30 16 39 H 0.15 -0.33 8.14 -2.39 -0.02 -0.35 16 40 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 41 H 0.12 -0.28 8.14 -2.39 -0.02 -0.30 16 42 H 0.10 -0.13 7.91 -2.39 -0.02 -0.15 16 43 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 44 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.40 7.13 7.89 -92.71 -0.73 6.39 16 Total: -1.00 -87.73 394.88 -1.57 -89.31 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -1.25 Total: 15.84 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: 5.62 Total: 4.86 kcal Atomic # 7 Polarization: -85.59 SS G_CDS: -6.67 Total: -92.25 kcal Atomic # 8 Polarization: -52.44 SS G_CDS: -0.15 Total: -52.58 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Atomic # 16 Polarization: -8.04 SS G_CDS: -1.16 Total: -9.20 kcal Total: -87.73 -1.57 -89.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688123777.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.420 kcal (2) G-P(sol) polarization free energy of solvation -87.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds