Wall clock time and date at job start Wed Apr 1 2020 01:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47725 * 2 1 4 4 C 1.52998 * 109.47057 * 120.00163 * 2 1 3 5 5 N 1.46506 * 109.47237 * 174.99470 * 4 2 1 6 6 C 1.34773 * 119.99969 * 179.72043 * 5 4 2 7 7 O 1.21281 * 120.00220 * 0.02562 * 6 5 4 8 8 C 1.50706 * 120.00080 * 180.02562 * 6 5 4 9 9 H 1.09007 * 109.39446 * 300.00604 * 8 6 5 10 10 C 1.53068 * 109.40092 * 180.17597 * 8 6 5 11 11 C 1.53344 * 108.42197 * 190.97134 * 10 8 6 12 12 C 1.52926 * 108.67558 * 67.52820 * 11 10 8 13 13 N 1.45753 * 110.48887 * 309.24837 * 12 11 10 14 14 C 1.33235 * 124.06825 * 19.15002 * 13 12 11 15 15 O 1.21282 * 118.15675 * 177.71109 * 14 13 12 16 16 N 1.46510 * 109.46806 * 239.99775 * 2 1 3 17 17 C 1.34772 * 119.99614 * 85.00215 * 16 2 1 18 18 O 1.21279 * 120.00140 * 0.02562 * 17 16 2 19 19 C 1.50700 * 119.99681 * 179.97438 * 17 16 2 20 20 S 1.81002 * 109.47359 * 179.97438 * 19 17 16 21 21 C 1.76195 * 100.00282 * 180.02562 * 20 19 17 22 22 H 1.07998 * 119.99911 * 0.02562 * 21 20 19 23 23 C 1.38793 * 120.00248 * 180.02562 * 21 20 19 24 24 N 1.31632 * 119.99734 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00212 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47012 * 90.00240 * 25 23 21 27 27 H 1.48496 * 109.47138 * 209.99779 * 25 23 21 28 28 H 1.48496 * 109.46893 * 330.00020 * 25 23 21 29 29 H 1.08998 * 109.47635 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46798 * 300.00328 * 1 2 3 31 31 H 1.08995 * 109.47105 * 59.99578 * 1 2 3 32 32 H 1.09001 * 109.47671 * 54.99810 * 4 2 1 33 33 H 1.08998 * 109.47454 * 294.99808 * 4 2 1 34 34 H 0.97005 * 119.99811 * 0.02562 * 5 4 2 35 35 H 1.08999 * 109.67428 * 310.70143 * 10 8 6 36 36 H 1.08996 * 109.67432 * 71.20154 * 10 8 6 37 37 H 1.09000 * 109.60419 * 187.28516 * 11 10 8 38 38 H 1.09007 * 109.60461 * 307.61124 * 11 10 8 39 39 H 1.09002 * 109.29467 * 69.56013 * 12 11 10 40 40 H 1.09003 * 109.29845 * 189.13981 * 12 11 10 41 41 H 0.96996 * 117.94689 * 199.07366 * 13 12 11 42 42 H 0.96996 * 119.99620 * 265.00312 * 16 2 1 43 43 H 1.08997 * 109.47735 * 300.00775 * 19 17 16 44 44 H 1.09007 * 109.46802 * 60.00160 * 19 17 16 45 45 H 0.97006 * 120.00241 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1905 6 6 4.1735 -1.4239 2.1935 7 8 3.5708 -1.8748 3.1445 8 6 5.6755 -1.5317 2.1334 9 1 5.9626 -2.0987 1.2478 10 6 6.1841 -2.2513 3.3850 11 6 7.7098 -2.1078 3.4402 12 6 8.0548 -0.6393 3.6911 13 7 7.3499 0.2188 2.7470 14 6 6.2717 -0.1554 2.0595 15 8 5.7445 0.6603 1.3332 16 7 2.0183 -0.6907 -1.1962 17 6 2.1470 -0.0183 -2.3572 18 8 1.8590 1.1585 -2.4115 19 6 2.6498 -0.7287 -3.5875 20 16 2.7099 0.4341 -4.9733 21 6 3.3130 -0.6311 -6.2406 22 1 3.5224 -1.6675 -6.0206 23 6 3.5190 -0.1384 -7.5217 24 7 3.2642 1.1250 -7.7897 25 14 4.1591 -1.2675 -8.8651 26 1 3.0139 -1.9054 -9.5628 27 1 4.9539 -0.4771 -9.8390 28 1 5.0181 -2.3176 -8.2613 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.6054 -1.7198 1.2952 33 1 1.7517 -0.1584 2.1370 34 1 3.9825 -0.4623 0.4318 35 1 5.7408 -1.8007 4.2730 36 1 5.9157 -3.3066 3.3361 37 1 8.1056 -2.7201 4.2505 38 1 8.1420 -2.4308 2.4930 39 1 7.7666 -0.3701 4.7072 40 1 9.1287 -0.4960 3.5712 41 1 7.6862 1.1185 2.6119 42 1 2.2489 -1.6319 -1.1526 43 1 3.6490 -1.1206 -3.3980 44 1 1.9774 -1.5510 -3.8325 45 1 3.4079 1.4693 -8.6852 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688151028.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:11 Heat of formation + Delta-G solvation = -152.720185 kcal Electronic energy + Delta-G solvation = -27576.147403 eV Core-core repulsion = 23524.911993 eV Total energy + Delta-G solvation = -4051.235410 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.02909 -40.88326 -39.99634 -37.76034 -37.29613 -34.82589 -34.57869 -34.09992 -32.66688 -30.98421 -30.02078 -27.69038 -27.64795 -25.52427 -23.80863 -22.90629 -21.88496 -21.64060 -20.17972 -19.84338 -18.71275 -18.17468 -17.96671 -17.76665 -17.27574 -16.89777 -16.86142 -16.38028 -16.16748 -16.02944 -15.62519 -15.24249 -15.02464 -14.90536 -14.65472 -14.53365 -14.35951 -14.07331 -13.94541 -13.57234 -13.28746 -13.16041 -13.03142 -12.96814 -12.88609 -12.58644 -12.42517 -12.27211 -12.07891 -11.94946 -11.72126 -11.14180 -11.13597 -10.95666 -10.86952 -10.26632 -10.21928 -10.15730 -10.10275 -8.66026 -8.34224 -6.12153 1.22361 1.26625 1.42673 1.46759 1.53444 1.57459 1.61209 2.07593 2.26093 2.29441 2.33277 2.99909 3.32208 3.42125 3.47377 3.54118 3.72721 3.85430 3.97060 4.03085 4.14644 4.22137 4.24378 4.32364 4.49876 4.50516 4.54716 4.65431 4.72734 4.75445 4.83798 4.98053 5.04537 5.07538 5.20073 5.31316 5.36889 5.42092 5.45687 5.73277 6.19433 6.20177 6.38098 6.47128 7.02800 7.06991 7.09819 7.23400 8.75019 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011549 B = 0.002511 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.820499 B =11148.078519 C =12645.068760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.137 3.863 3 H 0.070 0.930 4 C 0.120 3.880 5 N -0.713 5.713 6 C 0.527 3.473 7 O -0.565 6.565 8 C -0.125 4.125 9 H 0.151 0.849 10 C -0.101 4.101 11 C -0.133 4.133 12 C 0.099 3.901 13 N -0.707 5.707 14 C 0.520 3.480 15 O -0.589 6.589 16 N -0.709 5.709 17 C 0.537 3.463 18 O -0.561 6.561 19 C -0.129 4.129 20 S -0.152 6.152 21 C -0.545 4.545 22 H 0.083 0.917 23 C 0.012 3.988 24 N -0.912 5.912 25 Si 0.999 3.001 26 H -0.268 1.268 27 H -0.278 1.278 28 H -0.257 1.257 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.410 0.590 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.115 0.885 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.106 0.894 41 H 0.407 0.593 42 H 0.415 0.585 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.188 -11.637 27.487 31.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.032 3.968 3 H 0.088 0.912 4 C -0.004 4.004 5 N -0.365 5.365 6 C 0.313 3.687 7 O -0.445 6.445 8 C -0.149 4.149 9 H 0.168 0.832 10 C -0.139 4.139 11 C -0.171 4.171 12 C -0.024 4.024 13 N -0.357 5.357 14 C 0.306 3.694 15 O -0.470 6.470 16 N -0.364 5.364 17 C 0.323 3.677 18 O -0.438 6.438 19 C -0.281 4.281 20 S 0.076 5.924 21 C -0.693 4.693 22 H 0.101 0.899 23 C -0.193 4.193 24 N -0.549 5.549 25 Si 0.821 3.179 26 H -0.193 1.193 27 H -0.204 1.204 28 H -0.181 1.181 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.061 0.939 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.248 0.752 35 H 0.086 0.914 36 H 0.110 0.890 37 H 0.134 0.866 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.124 0.876 41 H 0.243 0.757 42 H 0.252 0.748 43 H 0.128 0.872 44 H 0.129 0.871 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.931 -9.680 27.656 30.355 hybrid contribution 0.891 -1.139 -1.419 2.026 sum 8.822 -10.819 26.237 29.719 Atomic orbital electron populations 1.22063 0.92887 1.03627 1.02803 1.21164 0.95777 0.96842 0.83059 0.91205 1.21689 0.79789 1.02061 0.96848 1.46144 1.07963 1.58310 1.24050 1.20227 0.89450 0.77217 0.81804 1.90694 1.70441 1.49573 1.33779 1.21550 0.91934 0.95543 1.05866 0.83215 1.21529 0.96413 1.01566 0.94387 1.21961 0.94146 0.95682 1.05262 1.21788 0.98018 0.90248 0.92344 1.45436 1.28564 1.18638 1.43072 1.19838 0.80784 0.89351 0.79449 1.90810 1.61309 1.53268 1.41582 1.45818 1.67842 1.14493 1.08268 1.20047 0.76575 0.86552 0.84524 1.90702 1.50420 1.17674 1.85052 1.23373 1.05514 1.03201 0.95972 1.85613 1.86719 1.17346 1.02761 1.23200 1.50827 0.98455 0.96795 0.89872 1.26144 0.95123 0.97200 1.00800 1.70191 1.46962 1.15502 1.22217 0.84943 0.78425 0.77740 0.76804 1.19319 1.20376 1.18082 0.90224 0.89517 0.93869 0.88957 0.89820 0.75235 0.91373 0.89045 0.86645 0.89990 0.90312 0.87591 0.75716 0.74834 0.87249 0.87138 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 9.48 71.98 0.68 -2.52 16 2 C 0.14 3.17 2.73 44.99 0.12 3.29 16 3 H 0.07 2.06 7.58 -2.39 -0.02 2.04 16 4 C 0.12 2.33 5.23 86.38 0.45 2.78 16 5 N -0.71 -15.40 4.88 -463.05 -2.26 -17.66 16 6 C 0.53 11.41 7.06 87.66 0.62 12.03 16 7 O -0.57 -14.82 15.79 -3.03 -0.05 -14.87 16 8 C -0.13 -1.95 2.79 -12.43 -0.03 -1.99 16 9 H 0.15 1.74 8.14 -2.38 -0.02 1.72 16 10 C -0.10 -1.05 4.78 30.73 0.15 -0.91 16 11 C -0.13 -0.55 6.02 30.68 0.18 -0.36 16 12 C 0.10 0.47 7.17 86.50 0.62 1.09 16 13 N -0.71 -8.78 5.44 -467.46 -2.54 -11.32 16 14 C 0.52 10.08 7.27 87.73 0.64 10.72 16 15 O -0.59 -16.81 15.54 -3.04 -0.05 -16.86 16 16 N -0.71 -17.86 4.52 -442.53 -2.00 -19.86 16 17 C 0.54 19.82 7.81 87.66 0.68 20.50 16 18 O -0.56 -26.20 15.52 -3.03 -0.05 -26.25 16 19 C -0.13 -5.12 6.16 71.24 0.44 -4.68 16 20 S -0.15 -8.48 20.57 -56.49 -1.16 -9.64 16 21 C -0.54 -31.19 9.50 67.95 0.65 -30.55 16 22 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 23 C 0.01 0.68 5.49 84.86 0.47 1.15 16 24 N -0.91 -56.48 13.22 21.65 0.29 -56.19 16 25 Si 1.00 43.66 29.55 68.60 2.03 45.69 16 26 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 27 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 28 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 29 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.41 9.86 6.78 -92.70 -0.63 9.23 16 35 H 0.07 0.93 7.72 -2.39 -0.02 0.91 16 36 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16 38 H 0.08 0.30 8.13 -2.38 -0.02 0.28 16 39 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 40 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 41 H 0.41 4.77 8.80 -92.71 -0.82 3.95 16 42 H 0.41 7.77 8.60 -92.71 -0.80 6.98 16 43 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 44 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 45 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16 Total: -1.00 -86.47 389.29 -1.33 -87.80 By element: Atomic # 1 Polarization: 29.79 SS G_CDS: -1.20 Total: 28.59 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 5.67 Total: 10.56 kcal Atomic # 7 Polarization: -98.51 SS G_CDS: -6.52 Total: -105.03 kcal Atomic # 8 Polarization: -57.83 SS G_CDS: -0.14 Total: -57.97 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -1.16 Total: -9.64 kcal Total: -86.47 -1.33 -87.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688151028.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.919 kcal (2) G-P(sol) polarization free energy of solvation -86.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds