Wall clock time and date at job start Wed Apr 1 2020 02:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46509 * 109.47012 * 2 1 4 4 C 1.46499 * 120.00217 * 90.00035 * 3 2 1 5 5 C 1.52992 * 109.47267 * 89.99979 * 4 3 2 6 6 N 1.46499 * 109.47267 * 180.02562 * 5 4 3 7 7 C 1.34784 * 119.99971 * 180.02562 * 6 5 4 8 8 O 1.21274 * 119.99897 * 359.72827 * 7 6 5 9 9 C 1.50695 * 119.99635 * 179.97438 * 7 6 5 10 10 H 1.08998 * 110.22056 * 320.47189 * 9 7 6 11 11 C 1.54483 * 110.24580 * 82.49945 * 9 7 6 12 12 C 1.54631 * 101.76293 * 144.41136 * 11 9 7 13 13 C 1.51277 * 104.19671 * 335.20293 * 12 11 9 14 14 O 1.21284 * 124.94214 * 196.27155 * 13 12 11 15 15 N 1.34422 * 110.11881 * 16.25267 * 13 12 11 16 16 C 1.34775 * 119.99790 * 269.99986 * 3 2 1 17 17 O 1.21274 * 120.00102 * 179.97438 * 16 3 2 18 18 C 1.50700 * 119.99881 * 0.02562 * 16 3 2 19 19 S 1.81004 * 109.47138 * 180.02562 * 18 16 3 20 20 C 1.76203 * 99.99926 * 180.02562 * 19 18 16 21 21 H 1.07998 * 119.99796 * 359.97438 * 20 19 18 22 22 C 1.38796 * 119.99698 * 180.02562 * 20 19 18 23 23 N 1.31637 * 120.00391 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99923 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47298 * 59.99383 * 24 22 20 26 26 H 1.48502 * 109.47103 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47076 * 299.99442 * 24 22 20 28 28 H 1.09009 * 109.46821 * 300.00156 * 1 2 3 29 29 H 1.08992 * 109.47157 * 60.00154 * 1 2 3 30 30 H 1.09003 * 109.46919 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47324 * 239.99771 * 2 1 3 32 32 H 1.09001 * 109.47300 * 119.99258 * 2 1 3 33 33 H 1.09004 * 109.47024 * 329.99695 * 4 3 2 34 34 H 1.09005 * 109.47136 * 210.00079 * 4 3 2 35 35 H 1.09004 * 109.47330 * 59.99904 * 5 4 3 36 36 H 1.09005 * 109.47124 * 300.00108 * 5 4 3 37 37 H 0.96999 * 119.99984 * 359.97438 * 6 5 4 38 38 H 1.08994 * 110.96983 * 262.53143 * 11 9 7 39 39 H 1.09004 * 110.96747 * 26.29843 * 11 9 7 40 40 H 1.08997 * 110.48488 * 216.52466 * 12 11 9 41 41 H 1.09007 * 110.59806 * 93.93752 * 12 11 9 42 42 H 0.96994 * 124.35206 * 180.42915 * 15 13 12 43 43 H 1.09004 * 109.47438 * 300.00048 * 18 16 3 44 44 H 1.09003 * 109.47344 * 59.99807 * 18 16 3 45 45 H 0.97001 * 120.00184 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0720 1.2687 5 6 3.7074 1.8316 1.7104 6 7 3.9514 2.5218 2.9794 7 6 5.1644 2.4507 3.5628 8 8 6.0523 1.8114 3.0397 9 6 5.4154 3.1612 4.8678 10 1 4.9220 4.1330 4.8687 11 6 4.9118 2.3027 6.0493 12 6 5.9662 2.6137 7.1369 13 6 7.1937 3.0280 6.3559 14 8 8.3178 3.0850 6.8075 15 7 6.8573 3.3235 5.0884 16 6 2.2429 2.0166 -1.1672 17 8 2.6467 3.1602 -1.1673 18 6 1.9912 1.3063 -2.4723 19 16 2.3841 2.4149 -3.8481 20 6 2.0091 1.3593 -5.2082 21 1 1.6534 0.3552 -5.0304 22 6 2.1720 1.8179 -6.5081 23 7 2.6061 3.0416 -6.7248 24 14 1.7753 0.6986 -7.9500 25 1 0.3467 0.2980 -7.8872 26 1 2.0309 1.4208 -9.2222 27 1 2.6322 -0.5125 -7.8870 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 1.5816 1.6879 2.0284 34 1 2.0955 3.1412 1.1383 35 1 4.3883 2.2157 0.9507 36 1 3.8744 0.7624 1.8407 37 1 3.2403 3.0304 3.3993 38 1 3.9186 2.6202 6.3667 39 1 4.9175 1.2435 5.7921 40 1 6.1746 1.7243 7.7315 41 1 5.6280 3.4287 7.7769 42 1 7.4867 3.6072 4.4070 43 1 2.6210 0.4186 -2.5302 44 1 0.9431 1.0125 -2.5298 45 1 2.7196 3.3622 -7.6332 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688390049.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:05 Heat of formation + Delta-G solvation = -139.935268 kcal Electronic energy + Delta-G solvation = -26829.116399 eV Core-core repulsion = 22778.435384 eV Total energy + Delta-G solvation = -4050.681015 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.84989 -41.02566 -40.14792 -37.52500 -37.17853 -35.96353 -34.59257 -32.59327 -32.18709 -31.13005 -30.04776 -28.29912 -27.62085 -24.58910 -24.20125 -23.32385 -21.80331 -21.50081 -20.49679 -19.50615 -18.89539 -18.34705 -18.10997 -17.53478 -17.09324 -16.88685 -16.68418 -16.44509 -16.37338 -15.80943 -15.62703 -15.09130 -14.85841 -14.80239 -14.71607 -14.46645 -14.42418 -14.12682 -14.07464 -13.55913 -13.42480 -13.19182 -13.05816 -12.95048 -12.87691 -12.72652 -12.65562 -12.31741 -12.06922 -11.97741 -11.73744 -11.29973 -11.13535 -11.03789 -10.90983 -10.28251 -10.26763 -10.19648 -9.80836 -8.68093 -8.35381 -6.13749 1.22692 1.37502 1.43002 1.43391 1.46926 1.53427 1.54758 1.82303 2.20735 2.27122 2.49530 2.98660 3.24462 3.30810 3.41306 3.65806 3.72525 3.85690 4.03344 4.03835 4.07904 4.12612 4.20906 4.37365 4.43806 4.48482 4.51445 4.61700 4.75967 4.83569 4.87560 4.93878 4.99819 5.03809 5.07477 5.25540 5.40291 5.41221 5.60295 5.64650 5.91065 6.18347 6.22937 6.44090 7.05740 7.08076 7.11833 7.16541 8.73470 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.020312 B = 0.001865 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.162007 B =15010.581350 C =15860.813372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.097 3.903 3 N -0.603 5.603 4 C 0.112 3.888 5 C 0.112 3.888 6 N -0.700 5.700 7 C 0.502 3.498 8 O -0.583 6.583 9 C 0.116 3.884 10 H 0.149 0.851 11 C -0.109 4.109 12 C -0.144 4.144 13 C 0.507 3.493 14 O -0.590 6.590 15 N -0.717 5.717 16 C 0.533 3.467 17 O -0.560 6.560 18 C -0.125 4.125 19 S -0.154 6.154 20 C -0.546 4.546 21 H 0.083 0.917 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.260 1.260 26 H -0.279 1.279 27 H -0.263 1.263 28 H 0.072 0.928 29 H 0.037 0.963 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.113 0.887 33 H 0.133 0.867 34 H 0.078 0.922 35 H 0.028 0.972 36 H 0.073 0.927 37 H 0.425 0.575 38 H 0.151 0.849 39 H 0.080 0.920 40 H 0.113 0.887 41 H 0.139 0.861 42 H 0.407 0.593 43 H 0.103 0.897 44 H 0.108 0.892 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.259 -5.685 29.763 31.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.025 4.025 3 N -0.337 5.337 4 C -0.011 4.011 5 C -0.014 4.014 6 N -0.354 5.354 7 C 0.287 3.713 8 O -0.462 6.462 9 C 0.007 3.993 10 H 0.166 0.834 11 C -0.146 4.146 12 C -0.184 4.184 13 C 0.296 3.704 14 O -0.471 6.471 15 N -0.371 5.371 16 C 0.320 3.680 17 O -0.438 6.438 18 C -0.276 4.276 19 S 0.073 5.927 20 C -0.694 4.694 21 H 0.101 0.899 22 C -0.192 4.192 23 N -0.547 5.547 24 Si 0.819 3.181 25 H -0.185 1.185 26 H -0.205 1.205 27 H -0.188 1.188 28 H 0.091 0.909 29 H 0.056 0.944 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.131 0.869 33 H 0.151 0.849 34 H 0.097 0.903 35 H 0.047 0.953 36 H 0.091 0.909 37 H 0.264 0.736 38 H 0.169 0.831 39 H 0.099 0.901 40 H 0.131 0.869 41 H 0.157 0.843 42 H 0.245 0.755 43 H 0.121 0.879 44 H 0.126 0.874 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.528 -4.346 29.597 30.421 hybrid contribution -0.004 -1.193 -1.824 2.180 sum -5.532 -5.539 27.772 28.855 Atomic orbital electron populations 1.22183 0.94582 1.03536 1.02269 1.21924 0.95475 0.80175 1.04928 1.47866 1.65827 1.15696 1.04330 1.21635 0.94704 0.99278 0.85502 1.21540 0.97268 0.97579 0.85050 1.45563 1.13587 1.53231 1.23038 1.21334 0.82127 0.80827 0.86981 1.90775 1.45461 1.43748 1.66206 1.21956 0.82200 1.02373 0.92730 0.83423 1.22756 1.01564 1.00171 0.90149 1.22436 0.91422 1.05886 0.98648 1.21807 0.90754 0.74691 0.83145 1.90742 1.26222 1.55923 1.74215 1.46240 1.09779 1.68263 1.12786 1.20124 0.76305 0.85912 0.85625 1.90686 1.46201 1.19456 1.87466 1.23408 1.05974 1.02997 0.95215 1.85562 1.87663 1.22058 0.97389 1.23153 1.51745 1.01815 0.92640 0.89917 1.26132 0.94174 0.97164 1.01705 1.70179 1.44150 1.17899 1.22507 0.85017 0.79370 0.77801 0.75905 1.18454 1.20457 1.18759 0.90890 0.94391 0.89437 0.90581 0.86896 0.84945 0.90323 0.95328 0.90913 0.73647 0.83094 0.90118 0.86921 0.84300 0.75475 0.87863 0.87374 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.24 71.98 0.74 -1.43 16 2 C 0.10 1.44 5.93 86.38 0.51 1.95 16 3 N -0.60 -13.44 2.47 -821.81 -2.03 -15.47 16 4 C 0.11 1.72 5.52 86.38 0.48 2.20 16 5 C 0.11 2.02 6.00 86.38 0.52 2.54 16 6 N -0.70 -7.74 5.56 -463.07 -2.57 -10.31 16 7 C 0.50 8.01 7.01 87.65 0.61 8.63 16 8 O -0.58 -16.51 16.58 -3.01 -0.05 -16.56 16 9 C 0.12 0.92 3.92 44.70 0.18 1.09 16 10 H 0.15 0.07 8.14 -2.39 -0.02 0.05 16 11 C -0.11 -0.20 6.68 31.65 0.21 0.01 16 12 C -0.14 -0.86 6.86 30.59 0.21 -0.65 16 13 C 0.51 9.34 8.43 87.90 0.74 10.08 16 14 O -0.59 -17.29 18.03 -3.04 -0.05 -17.34 16 15 N -0.72 -11.57 5.47 -442.97 -2.42 -13.99 16 16 C 0.53 18.81 7.69 87.66 0.67 19.48 16 17 O -0.56 -24.82 15.44 -3.01 -0.05 -24.87 16 18 C -0.12 -4.87 4.71 71.24 0.34 -4.54 16 19 S -0.15 -8.51 20.57 -56.49 -1.16 -9.67 16 20 C -0.55 -31.00 9.50 67.95 0.65 -30.35 16 21 H 0.08 4.34 7.80 -2.91 -0.02 4.31 16 22 C 0.01 0.74 5.49 84.86 0.47 1.21 16 23 N -0.91 -55.95 13.22 21.65 0.29 -55.66 16 24 Si 1.00 43.35 29.55 68.60 2.03 45.38 16 25 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 26 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 27 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 28 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.04 0.70 7.22 -2.39 -0.02 0.68 16 30 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.08 1.31 6.44 -2.39 -0.02 1.29 16 32 H 0.11 0.96 8.07 -2.39 -0.02 0.94 16 33 H 0.13 0.75 8.07 -2.38 -0.02 0.73 16 34 H 0.08 1.49 7.42 -2.38 -0.02 1.47 16 35 H 0.03 0.82 8.14 -2.38 -0.02 0.80 16 36 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.42 0.83 8.47 -92.71 -0.79 0.04 16 38 H 0.15 -1.08 8.14 -2.39 -0.02 -1.10 16 39 H 0.08 0.36 7.91 -2.39 -0.02 0.34 16 40 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.14 0.09 8.14 -2.38 -0.02 0.07 16 42 H 0.41 7.79 8.96 -92.71 -0.83 6.95 16 43 H 0.10 3.72 7.40 -2.39 -0.02 3.70 16 44 H 0.11 3.81 7.18 -2.39 -0.02 3.80 16 45 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -97.08 394.60 -0.30 -97.37 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -0.59 Total: 10.91 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 6.32 Total: 10.22 kcal Atomic # 7 Polarization: -88.69 SS G_CDS: -6.74 Total: -95.43 kcal Atomic # 8 Polarization: -58.63 SS G_CDS: -0.15 Total: -58.78 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.67 kcal Total: -97.08 -0.30 -97.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688390049.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.563 kcal (2) G-P(sol) polarization free energy of solvation -97.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds