Wall clock time and date at job start Wed Apr 1 2020 02:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21285 * 119.99520 * 2 1 4 4 N 1.34772 * 120.00298 * 180.02562 * 2 1 3 5 5 C 1.46497 * 120.00216 * 179.97438 * 4 2 1 6 6 H 1.09004 * 109.47112 * 34.99821 * 5 4 2 7 7 C 1.52999 * 109.47246 * 275.00048 * 5 4 2 8 8 C 1.50700 * 109.47436 * 154.99820 * 5 4 2 9 9 O 1.21282 * 119.99979 * 26.29826 * 8 5 4 10 10 N 1.34777 * 120.00209 * 206.29810 * 8 5 4 11 11 C 1.47068 * 136.05617 * 184.61047 * 10 8 5 12 12 C 1.53241 * 88.08169 * 207.20096 * 11 10 8 13 13 C 1.53000 * 114.32622 * 220.47010 * 12 11 10 14 14 N 1.46495 * 109.46885 * 268.75714 * 13 12 11 15 15 C 1.34783 * 119.99752 * 179.97438 * 14 13 12 16 16 O 1.21273 * 119.99978 * 359.97438 * 15 14 13 17 17 C 1.50699 * 119.99890 * 180.02562 * 15 14 13 18 18 S 1.81001 * 109.47256 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99860 * 179.97438 * 18 17 15 20 20 H 1.07993 * 120.00061 * 359.97438 * 19 18 17 21 21 C 1.38808 * 119.99599 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00082 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99899 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46965 * 89.99603 * 23 21 19 25 25 H 1.48500 * 109.47086 * 209.99781 * 23 21 19 26 26 H 1.48499 * 109.47103 * 330.00401 * 23 21 19 27 27 C 1.47067 * 136.05831 * 4.97704 * 10 8 5 28 28 H 1.09004 * 109.47099 * 90.00086 * 1 2 3 29 29 H 1.09000 * 109.46821 * 209.99755 * 1 2 3 30 30 H 1.08993 * 109.47426 * 330.00083 * 1 2 3 31 31 H 0.97004 * 119.99877 * 359.97438 * 4 2 1 32 32 H 1.09001 * 109.47119 * 65.27477 * 7 5 4 33 33 H 1.09003 * 109.47088 * 185.27254 * 7 5 4 34 34 H 1.08991 * 109.46973 * 305.26919 * 7 5 4 35 35 H 1.09003 * 113.46544 * 321.92921 * 11 10 8 36 36 H 1.08997 * 113.46797 * 92.37539 * 11 10 8 37 37 H 1.08997 * 114.19840 * 87.72487 * 12 11 10 38 38 H 1.09002 * 109.46957 * 28.75759 * 13 12 11 39 39 H 1.08999 * 109.47132 * 148.75450 * 13 12 11 40 40 H 0.96996 * 120.00374 * 0.02562 * 14 13 12 41 41 H 1.09002 * 109.47115 * 299.99736 * 17 15 14 42 42 H 1.08999 * 109.47558 * 59.99785 * 17 15 14 43 43 H 0.96993 * 119.99841 * 180.02562 * 22 21 19 44 44 H 1.09007 * 113.46325 * 267.62865 * 27 10 8 45 45 H 1.09003 * 113.46811 * 38.06030 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6459 -1.1671 -0.0011 6 1 4.0094 -0.3254 0.5884 7 6 4.1554 -1.0410 -1.4383 8 6 4.1486 -2.4549 0.5989 9 8 3.4630 -3.4542 0.5515 10 7 5.3600 -2.4961 1.1882 11 6 6.2099 -3.5344 1.7903 12 6 6.8290 -2.4441 2.6713 13 6 8.3425 -2.5686 2.8579 14 7 8.6229 -3.3709 4.0511 15 6 9.8977 -3.6151 4.4146 16 8 10.8124 -3.1711 3.7537 17 6 10.1862 -4.4410 5.6417 18 16 11.9766 -4.5882 5.8627 19 6 12.0247 -5.5711 7.3242 20 1 11.1046 -5.8867 7.7932 21 6 13.2454 -5.9388 7.8734 22 7 14.3669 -5.5536 7.3020 23 14 13.2965 -6.9803 9.4232 24 1 13.3112 -8.4183 9.0530 25 1 14.5215 -6.6558 10.1974 26 1 12.0973 -6.6947 10.2512 27 6 6.4109 -1.5216 1.5179 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.6959 -2.0072 -0.0005 32 1 3.8711 -0.0687 -1.8406 33 1 5.2413 -1.1350 -1.4483 34 1 3.7168 -1.8296 -2.0496 35 1 5.6500 -4.2803 2.3545 36 1 6.9159 -3.9783 1.0884 37 1 6.2932 -2.2651 3.6034 38 1 8.7777 -3.0529 1.9838 39 1 8.7767 -1.5760 2.9772 40 1 7.8914 -3.7270 4.5791 41 1 9.7512 -3.9568 6.5161 42 1 9.7517 -5.4335 5.5222 43 1 15.2198 -5.8109 7.6855 44 1 7.1710 -1.4240 0.7427 45 1 6.0217 -0.5594 1.8508 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688649526.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:15 Heat of formation + Delta-G solvation = -74.640568 kcal Electronic energy + Delta-G solvation = -26194.799201 eV Core-core repulsion = 22146.949576 eV Total energy + Delta-G solvation = -4047.849624 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.28188 -40.17042 -39.18043 -38.41594 -35.44148 -34.61313 -32.44965 -32.32721 -31.03777 -29.54763 -29.02705 -26.78721 -26.15415 -25.44723 -24.28584 -21.43827 -20.93618 -20.46091 -19.65441 -18.13648 -17.88090 -17.32083 -16.85104 -16.69317 -16.27720 -15.90168 -15.66144 -15.39776 -15.21305 -14.82335 -14.70754 -14.22303 -14.03273 -13.85270 -13.60717 -13.35251 -13.15189 -13.11455 -13.04895 -12.78002 -12.73128 -12.62122 -12.50358 -12.17970 -11.93126 -11.75944 -11.09196 -11.07340 -11.04384 -10.78362 -10.47746 -10.36962 -9.84058 -9.72398 -9.49101 -9.29175 -9.09425 -8.98271 -8.26702 -6.52669 -6.23848 -3.94637 1.93403 2.01695 2.15122 2.78094 2.95235 3.03230 3.21010 3.25610 3.29370 3.55260 3.67906 3.90787 4.18423 4.27357 4.32488 4.44639 4.53349 4.55003 4.70379 4.72324 4.85181 4.87848 4.91975 4.99454 5.08958 5.11524 5.12601 5.16522 5.22183 5.34043 5.40535 5.50098 5.55780 5.62688 5.79296 5.80288 5.85672 6.10625 6.50305 6.94338 7.09352 7.48702 7.57448 7.61236 7.67250 8.33100 8.53723 9.21663 10.83583 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.031539 B = 0.001476 C = 0.001455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.585514 B =18969.409366 C =19245.748821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.514 3.486 3 O -0.546 6.546 4 N -0.718 5.718 5 C 0.130 3.870 6 H 0.109 0.891 7 C -0.156 4.156 8 C 0.543 3.457 9 O -0.536 6.536 10 N -0.644 5.644 11 C 0.109 3.891 12 C -0.136 4.136 13 C 0.134 3.866 14 N -0.739 5.739 15 C 0.533 3.467 16 O -0.516 6.516 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.106 3.894 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.411 0.589 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.114 0.886 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.399 0.601 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.269 0.731 44 H 0.097 0.903 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.795 9.254 -15.414 32.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.302 3.698 3 O -0.423 6.423 4 N -0.373 5.373 5 C 0.022 3.978 6 H 0.126 0.874 7 C -0.214 4.214 8 C 0.331 3.669 9 O -0.412 6.412 10 N -0.379 5.379 11 C -0.013 4.013 12 C -0.155 4.155 13 C 0.009 3.991 14 N -0.395 5.395 15 C 0.319 3.681 16 O -0.390 6.390 17 C -0.305 4.305 18 S 0.166 5.834 19 C -0.685 4.685 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.017 4.017 28 H 0.114 0.886 29 H 0.101 0.899 30 H 0.114 0.886 31 H 0.248 0.752 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.132 0.868 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.233 0.767 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.115 0.885 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -25.228 10.229 -16.663 31.918 hybrid contribution -1.552 -1.814 1.976 3.099 sum -26.781 8.415 -14.686 31.681 Atomic orbital electron populations 1.21879 0.90978 1.05207 1.05062 1.20897 0.90835 0.83047 0.75025 1.90739 1.70758 1.31298 1.49501 1.45965 1.05655 1.09926 1.75770 1.20682 0.82164 0.96311 0.98663 0.87361 1.22065 1.01802 1.03771 0.93775 1.20119 0.79848 0.90228 0.76664 1.90721 1.55576 1.36697 1.58242 1.49502 1.15616 1.13945 1.58846 1.23143 0.91228 0.92771 0.94174 1.23193 0.96499 0.97185 0.98665 1.21130 0.92016 0.96885 0.89056 1.45972 1.08157 1.56065 1.29261 1.20314 0.81902 0.79973 0.85940 1.90709 1.44130 1.50324 1.53877 1.23534 1.08036 1.01531 0.97369 1.85395 0.93532 1.68996 1.35454 1.22868 0.95372 1.37929 1.12298 0.90910 1.24990 0.94636 0.96014 0.97888 1.70013 0.97547 1.43333 1.39373 0.86169 0.77824 0.79996 0.81517 1.20265 1.20737 1.19704 1.23127 0.88512 0.94310 0.95798 0.88572 0.89932 0.88569 0.75184 0.90474 0.90931 0.91466 0.89852 0.88840 0.86820 0.90900 0.90609 0.76686 0.89182 0.89173 0.92162 0.88470 0.89488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.63 10.30 36.01 0.37 -0.26 16 2 C 0.51 3.89 7.90 -10.99 -0.09 3.80 16 3 O -0.55 -6.27 16.76 5.55 0.09 -6.18 16 4 N -0.72 -4.98 5.05 -54.93 -0.28 -5.26 16 5 C 0.13 0.96 2.84 -69.08 -0.20 0.77 16 6 H 0.11 0.83 7.37 -51.93 -0.38 0.44 16 7 C -0.16 -0.98 9.47 37.16 0.35 -0.63 16 8 C 0.54 4.88 7.28 -10.98 -0.08 4.80 16 9 O -0.54 -6.47 16.81 5.56 0.09 -6.38 16 10 N -0.64 -4.72 3.69 -185.37 -0.68 -5.40 16 11 C 0.11 0.74 8.18 -8.64 -0.07 0.66 16 12 C -0.14 -0.77 4.09 -90.24 -0.37 -1.14 16 13 C 0.13 1.15 5.59 -4.04 -0.02 1.13 16 14 N -0.74 -8.25 5.56 -60.30 -0.33 -8.58 16 15 C 0.53 9.13 7.85 -10.98 -0.09 9.04 16 16 O -0.52 -11.00 15.86 5.56 0.09 -10.91 16 17 C -0.15 -2.95 6.16 36.01 0.22 -2.72 16 18 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 19 C -0.54 -15.03 9.50 30.94 0.29 -14.74 16 20 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -25.84 13.22 55.49 0.73 -25.11 16 23 Si 0.92 21.13 29.55 -169.99 -5.02 16.11 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 27 C 0.11 0.52 7.88 -8.51 -0.07 0.45 16 28 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.41 2.48 7.80 -40.82 -0.32 2.16 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.60 7.88 -51.93 -0.41 0.19 16 37 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.67 7.81 -51.93 -0.41 0.26 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.40 3.34 8.47 -40.82 -0.35 3.00 16 41 H 0.09 1.59 8.14 -51.91 -0.42 1.16 16 42 H 0.09 1.59 8.14 -51.92 -0.42 1.16 16 43 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 44 H 0.10 0.37 8.10 -51.93 -0.42 -0.06 16 45 H 0.09 0.35 8.09 -51.93 -0.42 -0.07 16 LS Contribution 402.12 15.07 6.06 6.06 Total: -1.00 -38.59 402.12 -8.20 -46.79 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -6.90 Total: -0.48 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 0.16 Total: 3.15 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: -0.56 Total: -44.36 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: 0.27 Total: -23.47 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -38.59 -8.20 -46.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688649526.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.850 kcal (2) G-P(sol) polarization free energy of solvation -38.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds