Wall clock time and date at job start Wed Apr 1 2020 02:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21285 * 119.99520 * 2 1 4 4 N 1.34772 * 120.00298 * 180.02562 * 2 1 3 5 5 C 1.46497 * 120.00216 * 179.97438 * 4 2 1 6 6 H 1.09004 * 109.47112 * 34.99821 * 5 4 2 7 7 C 1.52999 * 109.47246 * 275.00048 * 5 4 2 8 8 C 1.50700 * 109.47436 * 154.99820 * 5 4 2 9 9 O 1.21282 * 119.99979 * 26.29826 * 8 5 4 10 10 N 1.34777 * 120.00209 * 206.29810 * 8 5 4 11 11 C 1.47068 * 136.05617 * 184.61047 * 10 8 5 12 12 C 1.53241 * 88.08169 * 207.20096 * 11 10 8 13 13 C 1.53000 * 114.32622 * 220.47010 * 12 11 10 14 14 N 1.46495 * 109.46885 * 268.75714 * 13 12 11 15 15 C 1.34783 * 119.99752 * 179.97438 * 14 13 12 16 16 O 1.21273 * 119.99978 * 359.97438 * 15 14 13 17 17 C 1.50699 * 119.99890 * 180.02562 * 15 14 13 18 18 S 1.81001 * 109.47256 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99860 * 179.97438 * 18 17 15 20 20 H 1.07993 * 120.00061 * 359.97438 * 19 18 17 21 21 C 1.38808 * 119.99599 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00082 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99899 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46965 * 89.99603 * 23 21 19 25 25 H 1.48500 * 109.47086 * 209.99781 * 23 21 19 26 26 H 1.48499 * 109.47103 * 330.00401 * 23 21 19 27 27 C 1.47067 * 136.05831 * 4.97704 * 10 8 5 28 28 H 1.09004 * 109.47099 * 90.00086 * 1 2 3 29 29 H 1.09000 * 109.46821 * 209.99755 * 1 2 3 30 30 H 1.08993 * 109.47426 * 330.00083 * 1 2 3 31 31 H 0.97004 * 119.99877 * 359.97438 * 4 2 1 32 32 H 1.09001 * 109.47119 * 65.27477 * 7 5 4 33 33 H 1.09003 * 109.47088 * 185.27254 * 7 5 4 34 34 H 1.08991 * 109.46973 * 305.26919 * 7 5 4 35 35 H 1.09003 * 113.46544 * 321.92921 * 11 10 8 36 36 H 1.08997 * 113.46797 * 92.37539 * 11 10 8 37 37 H 1.08997 * 114.19840 * 87.72487 * 12 11 10 38 38 H 1.09002 * 109.46957 * 28.75759 * 13 12 11 39 39 H 1.08999 * 109.47132 * 148.75450 * 13 12 11 40 40 H 0.96996 * 120.00374 * 0.02562 * 14 13 12 41 41 H 1.09002 * 109.47115 * 299.99736 * 17 15 14 42 42 H 1.08999 * 109.47558 * 59.99785 * 17 15 14 43 43 H 0.96993 * 119.99841 * 180.02562 * 22 21 19 44 44 H 1.09007 * 113.46325 * 267.62865 * 27 10 8 45 45 H 1.09003 * 113.46811 * 38.06030 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6459 -1.1671 -0.0011 6 1 4.0094 -0.3254 0.5884 7 6 4.1554 -1.0410 -1.4383 8 6 4.1486 -2.4549 0.5989 9 8 3.4630 -3.4542 0.5515 10 7 5.3600 -2.4961 1.1882 11 6 6.2099 -3.5344 1.7903 12 6 6.8290 -2.4441 2.6713 13 6 8.3425 -2.5686 2.8579 14 7 8.6229 -3.3709 4.0511 15 6 9.8977 -3.6151 4.4146 16 8 10.8124 -3.1711 3.7537 17 6 10.1862 -4.4410 5.6417 18 16 11.9766 -4.5882 5.8627 19 6 12.0247 -5.5711 7.3242 20 1 11.1046 -5.8867 7.7932 21 6 13.2454 -5.9388 7.8734 22 7 14.3669 -5.5536 7.3020 23 14 13.2965 -6.9803 9.4232 24 1 13.3112 -8.4183 9.0530 25 1 14.5215 -6.6558 10.1974 26 1 12.0973 -6.6947 10.2512 27 6 6.4109 -1.5216 1.5179 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.6959 -2.0072 -0.0005 32 1 3.8711 -0.0687 -1.8406 33 1 5.2413 -1.1350 -1.4483 34 1 3.7168 -1.8296 -2.0496 35 1 5.6500 -4.2803 2.3545 36 1 6.9159 -3.9783 1.0884 37 1 6.2932 -2.2651 3.6034 38 1 8.7777 -3.0529 1.9838 39 1 8.7767 -1.5760 2.9772 40 1 7.8914 -3.7270 4.5791 41 1 9.7512 -3.9568 6.5161 42 1 9.7517 -5.4335 5.5222 43 1 15.2198 -5.8109 7.6855 44 1 7.1710 -1.4240 0.7427 45 1 6.0217 -0.5594 1.8508 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688649526.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:14 Heat of formation + Delta-G solvation = -105.265621 kcal Electronic energy + Delta-G solvation = -26196.127202 eV Core-core repulsion = 22146.949576 eV Total energy + Delta-G solvation = -4049.177626 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.89901 -40.85150 -40.33407 -39.18815 -36.08565 -35.70226 -34.56790 -32.94682 -31.94014 -30.47946 -29.69155 -27.73089 -27.32293 -26.78578 -24.89777 -22.08375 -21.74000 -21.47581 -20.26019 -19.78279 -18.67184 -17.98469 -17.78356 -17.56175 -17.31749 -16.86538 -16.65376 -16.58685 -16.18005 -16.01015 -15.80731 -15.44351 -14.84536 -14.70350 -14.53736 -14.42719 -14.14500 -13.88382 -13.65673 -13.58227 -13.40055 -13.26389 -13.14819 -13.10233 -13.01851 -12.87807 -12.73810 -12.60366 -12.41205 -11.71766 -11.66107 -11.16050 -11.12928 -11.05377 -10.87593 -10.33070 -10.24939 -10.05486 -9.89863 -8.64022 -8.33397 -6.10726 1.27442 1.30016 1.43093 1.43258 1.49275 1.58206 1.60398 1.66798 2.24330 2.28308 2.33800 3.00960 3.09047 3.24928 3.37336 3.75268 3.82678 3.88372 3.98238 4.01103 4.07679 4.17936 4.34432 4.35317 4.46727 4.53108 4.53918 4.56144 4.58582 4.64060 4.64847 4.70445 4.78094 4.83792 5.04528 5.06886 5.19471 5.25420 5.43538 5.48916 6.21255 6.41786 6.49093 6.55154 6.82882 7.08366 7.12061 7.29569 8.75707 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.031539 B = 0.001476 C = 0.001455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.585514 B =18969.409366 C =19245.748821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.511 3.489 3 O -0.590 6.590 4 N -0.714 5.714 5 C 0.131 3.869 6 H 0.107 0.893 7 C -0.149 4.149 8 C 0.541 3.459 9 O -0.573 6.573 10 N -0.645 5.645 11 C 0.103 3.897 12 C -0.117 4.117 13 C 0.134 3.866 14 N -0.712 5.712 15 C 0.535 3.465 16 O -0.565 6.565 17 C -0.132 4.132 18 S -0.152 6.152 19 C -0.547 4.547 20 H 0.083 0.917 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.997 3.003 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.258 1.258 27 C 0.108 3.892 28 H 0.113 0.887 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.416 0.584 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.126 0.874 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.417 0.583 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.271 0.729 44 H 0.113 0.887 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.041 8.998 -14.797 33.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.300 3.700 3 O -0.471 6.471 4 N -0.369 5.369 5 C 0.023 3.977 6 H 0.125 0.875 7 C -0.208 4.208 8 C 0.331 3.669 9 O -0.452 6.452 10 N -0.379 5.379 11 C -0.019 4.019 12 C -0.136 4.136 13 C 0.010 3.990 14 N -0.367 5.367 15 C 0.321 3.679 16 O -0.443 6.443 17 C -0.283 4.283 18 S 0.075 5.925 19 C -0.695 4.695 20 H 0.101 0.899 21 C -0.190 4.190 22 N -0.547 5.547 23 Si 0.819 3.181 24 H -0.194 1.194 25 H -0.204 1.204 26 H -0.182 1.182 27 C -0.014 4.014 28 H 0.131 0.869 29 H 0.121 0.879 30 H 0.115 0.885 31 H 0.254 0.746 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.116 0.884 37 H 0.144 0.856 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.254 0.746 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.080 0.920 44 H 0.131 0.869 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -27.531 9.966 -16.042 33.386 hybrid contribution -0.946 -1.708 1.713 2.598 sum -28.478 8.257 -14.329 32.931 Atomic orbital electron populations 1.21917 0.87898 1.06242 1.06450 1.21590 0.92306 0.82308 0.73775 1.90715 1.71914 1.32717 1.51739 1.46019 1.05617 1.10142 1.75130 1.20696 0.82578 0.95353 0.99112 0.87505 1.22014 1.02519 1.03306 0.92947 1.20330 0.80023 0.90135 0.76420 1.90699 1.56742 1.37919 1.59859 1.49563 1.15494 1.14991 1.57879 1.23255 0.91229 0.92945 0.94503 1.23014 0.94198 0.97045 0.99376 1.21269 0.93967 0.96218 0.87540 1.45710 1.06468 1.54804 1.29671 1.19971 0.83250 0.79645 0.85080 1.90699 1.46011 1.52426 1.55171 1.23390 1.01972 1.03462 0.99467 1.85551 1.01447 1.69436 1.36049 1.23218 0.96033 1.37838 1.12404 0.89936 1.26096 0.94104 0.97274 1.01558 1.70177 0.98294 1.44920 1.41349 0.84978 0.78269 0.78016 0.76874 1.19388 1.20365 1.18234 1.23298 0.88043 0.94331 0.95734 0.86895 0.87914 0.88481 0.74594 0.90995 0.89773 0.91666 0.90357 0.88392 0.85608 0.91129 0.90635 0.74626 0.87249 0.87268 0.92026 0.86886 0.87973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.94 10.30 71.24 0.73 -0.20 16 2 C 0.51 7.31 7.90 87.66 0.69 8.00 16 3 O -0.59 -13.45 16.76 -3.04 -0.05 -13.50 16 4 N -0.71 -9.32 5.05 -446.10 -2.25 -11.57 16 5 C 0.13 1.82 2.84 44.25 0.13 1.95 16 6 H 0.11 1.52 7.37 -2.39 -0.02 1.51 16 7 C -0.15 -1.74 9.47 71.98 0.68 -1.06 16 8 C 0.54 9.13 7.28 87.66 0.64 9.77 16 9 O -0.57 -13.48 16.81 -3.04 -0.05 -13.54 16 10 N -0.65 -8.26 3.69 -858.77 -3.17 -11.43 16 11 C 0.10 1.18 8.18 83.09 0.68 1.86 16 12 C -0.12 -1.00 4.09 -10.55 -0.04 -1.05 16 13 C 0.13 1.99 5.59 86.38 0.48 2.48 16 14 N -0.71 -14.20 5.56 -463.07 -2.57 -16.77 16 15 C 0.53 17.74 7.85 87.66 0.69 18.43 16 16 O -0.56 -24.20 15.86 -3.01 -0.05 -24.25 16 17 C -0.13 -4.89 6.16 71.24 0.44 -4.45 16 18 S -0.15 -8.21 20.57 -56.49 -1.16 -9.38 16 19 C -0.55 -30.70 9.50 67.96 0.65 -30.06 16 20 H 0.08 4.29 7.80 -2.91 -0.02 4.26 16 21 C 0.01 0.81 5.49 84.86 0.47 1.28 16 22 N -0.91 -55.33 13.22 21.65 0.29 -55.05 16 23 Si 1.00 43.01 29.55 68.60 2.03 45.04 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 25 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 26 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 27 C 0.11 0.78 7.88 83.18 0.66 1.43 16 28 H 0.11 0.29 8.14 -2.38 -0.02 0.27 16 29 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.42 4.66 7.80 -92.71 -0.72 3.93 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.10 1.07 7.88 -2.39 -0.02 1.05 16 37 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.07 1.16 7.81 -2.39 -0.02 1.14 16 39 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.42 5.60 8.47 -92.71 -0.79 4.82 16 41 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 42 H 0.11 3.63 8.14 -2.40 -0.02 3.61 16 43 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 44 H 0.11 0.52 8.10 -2.38 -0.02 0.50 16 45 H 0.10 0.50 8.09 -2.39 -0.02 0.49 16 Total: -1.00 -86.82 402.12 -0.60 -87.42 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -0.49 Total: 14.64 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: 6.88 Total: 8.38 kcal Atomic # 7 Polarization: -87.11 SS G_CDS: -7.71 Total: -94.82 kcal Atomic # 8 Polarization: -51.13 SS G_CDS: -0.15 Total: -51.28 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: -8.21 SS G_CDS: -1.16 Total: -9.38 kcal Total: -86.82 -0.60 -87.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688649526.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.850 kcal (2) G-P(sol) polarization free energy of solvation -86.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds