Wall clock time and date at job start Wed Apr 1 2020 01:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47474 * 2 1 4 4 C 1.53001 * 109.46865 * 240.00519 * 2 1 3 5 5 N 1.46499 * 109.47281 * 64.99941 * 4 2 1 6 6 C 1.34777 * 120.00019 * 180.02562 * 5 4 2 7 7 O 1.21286 * 120.00116 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00200 * 180.02562 * 6 5 4 9 9 S 1.81001 * 109.47051 * 180.02562 * 8 6 5 10 10 C 1.76202 * 99.99748 * 179.97438 * 9 8 6 11 11 H 1.08005 * 119.99785 * 0.02562 * 10 9 8 12 12 C 1.38797 * 119.99994 * 179.97438 * 10 9 8 13 13 N 1.31629 * 120.00124 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99945 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47251 * 0.02562 * 14 12 10 16 16 H 1.48495 * 109.47242 * 120.00424 * 14 12 10 17 17 H 1.48500 * 109.46903 * 240.00188 * 14 12 10 18 18 C 1.52997 * 109.47199 * 120.00597 * 2 1 3 19 19 N 1.46898 * 109.47147 * 294.99579 * 18 2 1 20 20 C 1.46896 * 111.00307 * 179.97438 * 19 18 2 21 21 H 1.08997 * 109.57497 * 325.16124 * 20 19 18 22 22 C 1.53245 * 109.52348 * 205.00109 * 20 19 18 23 23 C 1.53246 * 108.56606 * 184.48192 * 22 20 19 24 24 C 1.50587 * 109.21217 * 55.58427 * 23 22 20 25 25 O 1.21224 * 119.36039 * 150.93863 * 24 23 22 26 26 N 1.34210 * 121.23433 * 331.00959 * 24 23 22 27 27 C 1.34147 * 122.60387 * 0.42333 * 26 24 23 28 28 O 1.21222 * 119.35552 * 179.50003 * 27 26 24 29 29 H 1.08998 * 109.47159 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47237 * 299.99600 * 1 2 3 31 31 H 1.09001 * 109.47060 * 59.99576 * 1 2 3 32 32 H 1.08997 * 109.47066 * 185.00043 * 4 2 1 33 33 H 1.09007 * 109.47110 * 304.99642 * 4 2 1 34 34 H 0.96999 * 120.00143 * 0.02562 * 5 4 2 35 35 H 1.08999 * 109.46669 * 299.99643 * 8 6 5 36 36 H 1.08998 * 109.47056 * 59.99686 * 8 6 5 37 37 H 0.96993 * 120.00237 * 180.02562 * 13 12 10 38 38 H 1.09003 * 109.47315 * 175.00175 * 18 2 1 39 39 H 1.08996 * 109.47062 * 54.99796 * 18 2 1 40 40 H 1.00901 * 110.99840 * 56.04654 * 19 18 2 41 41 H 1.08997 * 109.62258 * 64.76084 * 22 20 19 42 42 H 1.08996 * 109.77335 * 304.29195 * 22 20 19 43 43 H 1.09002 * 109.52281 * 175.52178 * 23 22 20 44 44 H 1.08995 * 109.52337 * 295.64848 * 23 22 20 45 45 H 0.96995 * 118.69249 * 180.48160 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2493 5 7 1.6523 0.0355 -2.4424 6 6 1.9954 -0.4134 -3.6660 7 8 2.6254 -1.4435 -3.7795 8 6 1.5972 0.3653 -4.8933 9 16 2.1991 -0.4888 -6.3713 10 6 1.6099 0.6069 -7.6191 11 1 1.0587 1.4937 -7.3426 12 6 1.8550 0.3311 -8.9571 13 7 2.5272 -0.7494 -9.2939 14 14 1.2309 1.4931 -10.2798 15 1 0.5105 2.6254 -9.6443 16 1 2.3798 2.0148 -11.0626 17 1 0.3066 0.7629 -11.1842 18 6 2.0400 -0.7214 1.2491 19 7 1.6515 0.0372 2.4456 20 6 2.1248 -0.6274 3.6671 21 1 2.0841 -1.7084 3.5338 22 6 1.2353 -0.2231 4.8477 23 6 1.8137 -0.8370 6.1271 24 6 3.2493 -0.4079 6.2776 25 8 3.7271 -0.3099 7.3873 26 7 4.0087 -0.1306 5.2063 27 6 3.5431 -0.2083 3.9506 28 8 4.2785 0.0644 3.0263 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.1262 -0.7994 -1.2057 33 1 1.6053 -1.7198 -1.2953 34 1 1.1488 0.8596 -2.3517 35 1 0.5110 0.4443 -4.9368 36 1 2.0326 1.3635 -4.8474 37 1 2.6988 -0.9420 -10.2289 38 1 3.1263 -0.7996 1.2055 39 1 1.6054 -1.7199 1.2950 40 1 0.6529 0.1791 2.4753 41 1 0.2235 -0.5955 4.6880 42 1 1.2154 0.8629 4.9394 43 1 1.2390 -0.4944 6.9876 44 1 1.7631 -1.9240 6.0647 45 1 4.9309 0.1358 5.3456 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698738162.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:02 Heat of formation + Delta-G solvation = -117.477800 kcal Electronic energy + Delta-G solvation = -26447.355523 eV Core-core repulsion = 22397.648337 eV Total energy + Delta-G solvation = -4049.707186 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.99521 -39.54783 -39.22961 -37.74900 -36.27520 -35.18999 -33.56629 -32.41973 -31.95643 -29.39128 -28.08924 -26.70342 -25.48634 -24.65588 -24.36091 -23.17672 -20.69003 -20.28629 -19.73219 -18.29236 -17.85453 -17.82030 -17.04145 -16.38807 -16.28863 -15.86130 -15.48960 -15.41605 -15.29179 -15.05585 -14.81467 -14.78884 -14.40354 -13.91375 -13.72291 -13.54567 -13.35334 -13.11317 -12.90860 -12.75546 -12.56199 -12.49830 -12.01906 -11.77950 -11.33730 -11.18897 -11.12311 -11.06071 -11.00704 -10.94543 -10.74480 -10.73041 -10.70491 -9.79366 -9.37994 -9.11763 -9.06787 -8.84003 -8.21493 -6.48550 -6.20790 -3.91084 0.98865 2.13599 2.25052 3.01887 3.13596 3.21246 3.22238 3.29461 3.33789 3.47682 3.72441 3.80252 3.90966 4.20228 4.21391 4.33480 4.47059 4.57289 4.59901 4.66571 4.89699 4.90669 5.09770 5.14441 5.14635 5.17358 5.28987 5.38633 5.48148 5.50058 5.62132 5.67271 5.74352 5.90801 5.97287 6.00034 6.15940 6.18564 6.34984 6.65697 6.69530 6.85782 7.31979 7.60871 7.74198 8.36458 8.64985 9.24679 10.86737 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.037517 B = 0.001493 C = 0.001472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.154138 B =18745.419268 C =19016.809900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.100 4.100 3 H 0.089 0.911 4 C 0.127 3.873 5 N -0.737 5.737 6 C 0.531 3.469 7 O -0.519 6.519 8 C -0.153 4.153 9 S -0.061 6.061 10 C -0.535 4.535 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.063 3.937 19 N -0.668 5.668 20 C 0.069 3.931 21 H 0.092 0.908 22 C -0.128 4.128 23 C -0.140 4.140 24 C 0.524 3.476 25 O -0.505 6.505 26 N -0.676 5.676 27 C 0.526 3.474 28 O -0.476 6.476 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.397 0.603 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.268 0.732 38 H 0.091 0.909 39 H 0.038 0.962 40 H 0.353 0.647 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.119 0.881 44 H 0.113 0.887 45 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.861 1.267 33.247 33.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.120 4.120 3 H 0.107 0.893 4 C 0.002 3.998 5 N -0.392 5.392 6 C 0.317 3.683 7 O -0.393 6.393 8 C -0.304 4.304 9 S 0.165 5.835 10 C -0.683 4.683 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.066 4.066 19 N -0.303 5.303 20 C -0.045 4.045 21 H 0.110 0.890 22 C -0.166 4.166 23 C -0.180 4.180 24 C 0.313 3.687 25 O -0.378 6.378 26 N -0.342 5.342 27 C 0.312 3.688 28 O -0.345 6.345 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.232 0.768 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.109 0.891 39 H 0.056 0.944 40 H 0.175 0.825 41 H 0.115 0.885 42 H 0.109 0.891 43 H 0.137 0.863 44 H 0.131 0.869 45 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -4.782 -0.015 32.904 33.250 hybrid contribution -1.492 1.712 -0.572 2.342 sum -6.274 1.697 32.332 32.979 Atomic orbital electron populations 1.21907 0.94794 1.02134 1.02086 1.21337 0.96151 1.01274 0.93188 0.89285 1.21221 1.00232 0.95155 0.83153 1.45970 1.59616 1.28080 1.05497 1.20300 0.78692 0.85484 0.83823 1.90703 1.38405 1.23953 1.86223 1.23528 1.04742 1.03472 0.98638 1.85404 1.72956 1.32900 0.92199 1.22917 1.41434 1.11190 0.92785 0.90874 1.24992 0.94868 0.95797 0.97940 1.70027 1.37605 1.24606 1.18062 0.86114 0.78569 0.80139 0.80655 1.19626 1.20574 1.20580 1.22114 1.02467 0.94035 0.88018 1.60072 1.20087 1.50279 0.99829 1.21546 0.91093 0.99226 0.92609 0.89035 1.21951 0.99935 1.03272 0.91410 1.21909 0.91213 1.03984 1.00939 1.20991 0.89222 0.74909 0.83588 1.90811 1.74187 1.48173 1.24660 1.44937 1.17446 1.64071 1.07795 1.20930 0.90531 0.75756 0.81546 1.90792 1.58022 1.42933 1.42720 0.92474 0.92446 0.91970 0.91450 0.91700 0.76841 0.89278 0.89227 0.92247 0.89058 0.94395 0.82491 0.88464 0.89136 0.86310 0.86863 0.74752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 8.84 37.16 0.33 -0.58 16 2 C -0.10 -0.76 2.63 -90.62 -0.24 -1.00 16 3 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 4 C 0.13 1.43 5.06 -4.04 -0.02 1.41 16 5 N -0.74 -9.67 5.28 -60.29 -0.32 -9.99 16 6 C 0.53 9.95 7.85 -10.98 -0.09 9.86 16 7 O -0.52 -11.92 15.86 5.55 0.09 -11.83 16 8 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 10 C -0.53 -15.31 9.50 30.94 0.29 -15.02 16 11 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 12 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 13 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 14 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 15 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 C 0.06 0.43 4.81 -3.83 -0.02 0.41 16 19 N -0.67 -3.40 6.11 -107.88 -0.66 -4.06 16 20 C 0.07 0.26 2.74 -68.79 -0.19 0.07 16 21 H 0.09 0.23 7.80 -51.93 -0.41 -0.17 16 22 C -0.13 -0.13 5.35 -26.48 -0.14 -0.27 16 23 C -0.14 -0.20 6.07 -27.81 -0.17 -0.37 16 24 C 0.52 2.84 7.75 -11.29 -0.09 2.75 16 25 O -0.51 -4.67 17.88 5.61 0.10 -4.57 16 26 N -0.68 -3.89 5.10 -11.74 -0.06 -3.95 16 27 C 0.53 3.62 7.56 -11.32 -0.09 3.53 16 28 O -0.48 -5.23 15.91 5.61 0.09 -5.14 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.24 6.68 -51.93 -0.35 -0.10 16 31 H 0.06 0.41 7.18 -51.93 -0.37 0.04 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 34 H 0.40 4.06 7.66 -40.82 -0.31 3.75 16 35 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 36 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 37 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.09 0.84 6.73 -51.93 -0.35 0.49 16 39 H 0.04 0.22 8.06 -51.93 -0.42 -0.20 16 40 H 0.35 1.09 6.61 -39.29 -0.26 0.83 16 41 H 0.10 -0.10 8.14 -51.93 -0.42 -0.52 16 42 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 43 H 0.12 0.06 8.14 -51.93 -0.42 -0.36 16 44 H 0.11 -0.02 8.14 -51.93 -0.42 -0.45 16 45 H 0.41 2.37 8.79 -40.82 -0.36 2.01 16 LS Contribution 387.65 15.07 5.84 5.84 Total: -1.00 -38.95 387.65 -8.30 -47.26 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -6.60 Total: -0.50 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -0.29 Total: -0.08 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: -0.30 Total: -43.53 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: 0.28 Total: -21.54 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -38.95 -8.30 -47.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698738162.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.221 kcal (2) G-P(sol) polarization free energy of solvation -38.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds