Wall clock time and date at job start Wed Apr 1 2020 01:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35705 * 117.00453 * 2 1 4 4 C 1.41930 * 126.88189 * 179.97438 * 3 2 1 5 5 C 1.35275 * 103.95754 * 179.97438 * 4 3 2 6 6 C 1.50706 * 126.70610 * 179.97438 * 5 4 3 7 7 N 1.46902 * 109.46577 * 90.00176 * 6 5 4 8 8 C 1.46905 * 110.99800 * 179.97438 * 7 6 5 9 9 H 1.09004 * 109.47172 * 325.00303 * 8 7 6 10 10 C 1.53000 * 109.47191 * 85.00066 * 8 7 6 11 11 C 1.52995 * 109.47133 * 205.00259 * 8 7 6 12 12 H 1.09000 * 109.47372 * 299.99618 * 11 8 7 13 13 C 1.52997 * 109.47412 * 60.00165 * 11 8 7 14 14 N 1.46505 * 109.46930 * 179.97438 * 11 8 7 15 15 C 1.34775 * 119.99661 * 154.99950 * 14 11 8 16 16 O 1.21275 * 120.00472 * 359.97438 * 15 14 11 17 17 C 1.50705 * 119.99850 * 179.97438 * 15 14 11 18 18 S 1.81003 * 109.47288 * 180.02562 * 17 15 14 19 19 C 1.76200 * 100.00064 * 179.97438 * 18 17 15 20 20 H 1.08008 * 119.99769 * 0.02562 * 19 18 17 21 21 C 1.38790 * 120.00095 * 179.97438 * 19 18 17 22 22 N 1.31632 * 119.99766 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00316 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46942 * 90.00164 * 23 21 19 25 25 H 1.48499 * 109.47376 * 210.00418 * 23 21 19 26 26 H 1.48503 * 109.46706 * 330.00553 * 23 21 19 27 27 O 1.34083 * 106.58430 * 0.26341 * 5 4 3 28 28 N 1.20910 * 111.71393 * 359.52373 * 27 5 4 29 29 H 1.09000 * 109.47350 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47577 * 300.00970 * 1 2 3 31 31 H 1.09004 * 109.46965 * 60.00729 * 1 2 3 32 32 H 1.07993 * 128.01937 * 359.97438 * 4 3 2 33 33 H 1.09000 * 109.47318 * 209.99684 * 6 5 4 34 34 H 1.09000 * 109.47161 * 330.00314 * 6 5 4 35 35 H 1.00896 * 111.00594 * 303.95433 * 7 6 5 36 36 H 1.09002 * 109.46808 * 300.00221 * 10 8 7 37 37 H 1.08996 * 109.47051 * 59.99755 * 10 8 7 38 38 H 1.09001 * 109.47129 * 180.02562 * 10 8 7 39 39 H 1.09000 * 109.47298 * 59.99408 * 13 11 8 40 40 H 1.08999 * 109.47224 * 180.02562 * 13 11 8 41 41 H 1.09001 * 109.46776 * 299.99898 * 13 11 8 42 42 H 0.96992 * 120.00145 * 334.99687 * 14 11 8 43 43 H 1.09002 * 109.47087 * 299.99977 * 17 15 14 44 44 H 1.09001 * 109.46855 * 60.00003 * 17 15 14 45 45 H 0.97003 * 119.99816 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 3.4434 1.4526 0.0005 5 6 3.5396 2.8019 -0.0003 6 6 4.8089 3.6144 0.0003 7 7 5.2224 3.8775 -1.3845 8 6 6.4590 4.6697 -1.4232 9 1 6.4649 5.3747 -0.5919 10 6 7.6662 3.7367 -1.3093 11 6 6.5312 5.4382 -2.7442 12 1 6.5253 4.7332 -3.5755 13 6 5.3240 6.3712 -2.8581 14 7 7.7640 6.2287 -2.7825 15 6 8.3062 6.5746 -3.9669 16 8 7.7738 6.2311 -5.0010 17 6 9.5741 7.3883 -4.0063 18 16 10.0451 7.6885 -5.7280 19 6 11.5131 8.6319 -5.4836 20 1 11.8534 8.8514 -4.4823 21 6 12.2326 9.0919 -6.5776 22 7 11.8180 8.8238 -7.7979 23 14 13.7885 10.0927 -6.3186 24 1 14.9578 9.1801 -6.2473 25 1 13.9649 11.0358 -7.4520 26 1 13.6795 10.8576 -5.0504 27 8 2.2851 3.2751 0.0047 28 7 1.4701 2.3819 -0.0010 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 4.2446 0.7285 0.0014 33 1 4.6346 4.5602 0.5133 34 1 5.5943 3.0611 0.5152 35 1 5.3279 3.0167 -1.9002 36 1 7.6147 3.1892 -0.3681 37 1 7.6603 3.0317 -2.1405 38 1 8.5837 4.3246 -1.3375 39 1 5.3299 7.0762 -2.0268 40 1 5.3752 6.9184 -3.7994 41 1 4.4065 5.7834 -2.8295 42 1 8.1900 6.5032 -1.9554 43 1 9.4099 8.3414 -3.5035 44 1 10.3713 6.8434 -3.5008 45 1 12.3206 9.1457 -8.5625 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700392583.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:50:25 Heat of formation + Delta-G solvation = -36.724629 kcal Electronic energy + Delta-G solvation = -26479.758553 eV Core-core repulsion = 22433.553087 eV Total energy + Delta-G solvation = -4046.205466 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.92665 -40.82982 -39.85138 -38.75442 -36.02779 -34.56423 -34.21892 -33.33090 -31.92958 -30.28615 -29.77235 -28.56510 -27.63331 -26.38818 -24.54275 -24.31330 -22.22324 -21.85929 -21.51812 -19.82303 -19.00833 -18.84301 -17.83972 -17.76099 -17.37651 -16.85918 -16.52926 -16.36094 -16.20799 -16.12217 -15.91576 -15.50693 -15.02855 -14.77775 -14.66578 -14.56284 -14.34579 -14.03385 -13.65944 -13.45695 -13.16438 -13.13606 -13.04811 -12.86920 -12.85922 -12.71331 -12.58405 -12.47867 -12.21506 -12.10975 -11.73188 -11.57860 -11.12285 -10.88292 -10.64375 -10.30772 -10.23686 -10.09369 -9.38876 -8.63799 -8.32544 -6.10275 0.37715 1.21327 1.29839 1.43927 1.49554 1.59655 1.69716 1.77222 2.13630 2.28768 2.34849 3.01729 3.17911 3.29931 3.40860 3.70549 3.82709 3.92911 4.05510 4.11836 4.17760 4.20945 4.26401 4.32829 4.35347 4.51635 4.55183 4.57115 4.59930 4.64762 4.72767 4.87887 4.91765 4.94379 5.04075 5.15869 5.33668 5.43884 5.44629 5.60189 5.93505 5.94363 6.21856 6.32550 6.60722 7.08913 7.22706 7.35101 8.76618 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.038511 B = 0.001540 C = 0.001526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.899851 B =18179.598689 C =18347.361827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.298 6.298 3 C 0.188 3.812 4 C -0.231 4.231 5 C 0.011 3.989 6 C 0.142 3.858 7 N -0.686 5.686 8 C 0.097 3.903 9 H 0.112 0.888 10 C -0.183 4.183 11 C 0.153 3.847 12 H 0.059 0.941 13 C -0.146 4.146 14 N -0.705 5.705 15 C 0.536 3.464 16 O -0.567 6.567 17 C -0.129 4.129 18 S -0.155 6.155 19 C -0.545 4.545 20 H 0.083 0.917 21 C 0.013 3.987 22 N -0.912 5.912 23 Si 0.998 3.002 24 H -0.268 1.268 25 H -0.279 1.279 26 H -0.257 1.257 27 O 0.095 5.905 28 N -0.433 5.433 29 H 0.133 0.867 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.201 0.799 33 H 0.115 0.885 34 H 0.100 0.900 35 H 0.351 0.649 36 H 0.081 0.919 37 H 0.048 0.952 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.020 0.980 41 H 0.081 0.919 42 H 0.416 0.584 43 H 0.109 0.891 44 H 0.111 0.889 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.118 -15.293 24.950 33.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.205 6.205 3 C -0.009 4.009 4 C -0.253 4.253 5 C -0.053 4.053 6 C 0.013 3.987 7 N -0.319 5.319 8 C -0.013 4.013 9 H 0.130 0.870 10 C -0.242 4.242 11 C 0.048 3.952 12 H 0.077 0.923 13 C -0.205 4.205 14 N -0.359 5.359 15 C 0.321 3.679 16 O -0.445 6.445 17 C -0.280 4.280 18 S 0.072 5.928 19 C -0.693 4.693 20 H 0.102 0.898 21 C -0.191 4.191 22 N -0.549 5.549 23 Si 0.820 3.180 24 H -0.193 1.193 25 H -0.204 1.204 26 H -0.181 1.181 27 O 0.035 5.965 28 N -0.161 5.161 29 H 0.151 0.849 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.218 0.782 33 H 0.133 0.867 34 H 0.118 0.882 35 H 0.171 0.829 36 H 0.100 0.900 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.039 0.961 41 H 0.100 0.900 42 H 0.253 0.747 43 H 0.127 0.873 44 H 0.129 0.871 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.589 -15.196 23.016 33.259 hybrid contribution 2.399 -0.079 1.051 2.621 sum -16.189 -15.275 24.067 32.782 Atomic orbital electron populations 1.23271 0.75511 1.05877 1.02067 1.86170 1.24029 1.20909 1.89385 1.22444 0.92066 0.85779 1.00584 1.22177 0.94006 0.96330 1.12795 1.24589 0.88236 0.92963 0.99491 1.20559 0.87194 1.00125 0.90811 1.60240 1.33572 1.25275 1.12801 1.21586 0.87722 0.95509 0.96505 0.86976 1.22510 0.98871 1.00167 1.02673 1.20844 0.83090 0.92616 0.98661 0.92284 1.21979 0.98512 0.99528 1.00459 1.45723 1.27110 1.55477 1.07609 1.20005 0.84803 0.79121 0.83931 1.90696 1.63599 1.55421 1.34810 1.23379 0.98436 1.03310 1.02903 1.85617 1.32365 1.70361 1.04414 1.23214 1.10904 1.39059 0.96153 0.89840 1.26118 1.01925 0.97141 0.93948 1.70192 1.40606 1.45119 0.98947 0.84962 0.76910 0.77741 0.78422 1.19298 1.20448 1.18120 1.84784 1.13144 1.29895 1.68641 1.74151 1.16718 0.97292 1.27909 0.84873 0.92349 0.92743 0.78235 0.86672 0.88187 0.82921 0.90031 0.93281 0.91677 0.91312 0.96090 0.90002 0.74714 0.87315 0.87094 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.73 113.37 1.22 1.54 16 2 O -0.30 -5.29 10.57 -90.25 -0.95 -6.24 16 3 C 0.19 3.55 8.01 85.79 0.69 4.23 16 4 C -0.23 -2.97 11.11 22.50 0.25 -2.72 16 5 C 0.01 0.14 6.99 25.00 0.17 0.31 16 6 C 0.14 0.81 6.04 85.56 0.52 1.33 16 7 N -0.69 -6.62 5.47 -495.55 -2.71 -9.33 16 8 C 0.10 0.99 2.22 44.91 0.10 1.09 16 9 H 0.11 0.68 7.80 -2.38 -0.02 0.66 16 10 C -0.18 -1.75 9.00 71.98 0.65 -1.11 16 11 C 0.15 3.07 2.34 44.99 0.11 3.17 16 12 H 0.06 1.57 7.58 -2.39 -0.02 1.55 16 13 C -0.15 -3.15 9.33 71.98 0.67 -2.48 16 14 N -0.70 -15.80 4.38 -442.54 -1.94 -17.74 16 15 C 0.54 18.96 7.81 87.66 0.68 19.64 16 16 O -0.57 -26.01 15.52 -3.01 -0.05 -26.06 16 17 C -0.13 -4.94 6.16 71.24 0.44 -4.50 16 18 S -0.15 -8.53 20.57 -56.49 -1.16 -9.70 16 19 C -0.55 -30.88 9.50 67.95 0.65 -30.24 16 20 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 21 C 0.01 0.75 5.49 84.85 0.47 1.22 16 22 N -0.91 -56.02 13.22 21.65 0.29 -55.73 16 23 Si 1.00 43.24 29.55 68.60 2.03 45.26 16 24 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 25 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 27 O 0.10 1.76 11.19 71.24 0.80 2.55 16 28 N -0.43 -9.14 11.54 -172.59 -1.99 -11.14 16 29 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.20 1.44 8.06 -2.91 -0.02 1.41 16 33 H 0.12 0.44 8.05 -2.39 -0.02 0.42 16 34 H 0.10 0.08 7.44 -2.39 -0.02 0.06 16 35 H 0.35 3.49 8.47 -89.70 -0.76 2.73 16 36 H 0.08 0.40 7.45 -2.39 -0.02 0.38 16 37 H 0.05 0.63 8.13 -2.39 -0.02 0.61 16 38 H 0.06 0.72 7.45 -2.39 -0.02 0.70 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.08 1.66 7.60 -2.39 -0.02 1.65 16 42 H 0.42 6.12 8.39 -92.71 -0.78 5.35 16 43 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 44 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 45 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -82.52 397.60 0.39 -82.12 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -0.52 Total: 14.50 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: 6.61 Total: -8.51 kcal Atomic # 7 Polarization: -87.58 SS G_CDS: -6.36 Total: -93.94 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -0.20 Total: -29.75 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.70 kcal Total: -82.52 0.39 -82.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700392583.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.398 kcal (2) G-P(sol) polarization free energy of solvation -82.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds