Wall clock time and date at job start Wed Apr 1 2020 01:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35702 * 117.00137 * 2 1 4 4 C 1.41935 * 126.88494 * 179.97438 * 3 2 1 5 5 C 1.35266 * 103.96187 * 180.20486 * 4 3 2 6 6 C 1.50703 * 126.70975 * 179.76053 * 5 4 3 7 7 N 1.46898 * 109.47148 * 89.99920 * 6 5 4 8 8 C 1.46903 * 111.00060 * 180.02562 * 7 6 5 9 9 H 1.08999 * 109.46846 * 35.00015 * 8 7 6 10 10 C 1.53002 * 109.47071 * 275.00078 * 8 7 6 11 11 C 1.52990 * 109.46896 * 154.99975 * 8 7 6 12 12 H 1.08999 * 109.47341 * 60.00343 * 11 8 7 13 13 C 1.53002 * 109.47344 * 299.99935 * 11 8 7 14 14 N 1.46507 * 109.46942 * 179.97438 * 11 8 7 15 15 C 1.34776 * 120.00013 * 205.00128 * 14 11 8 16 16 O 1.21280 * 120.00095 * 359.97438 * 15 14 11 17 17 C 1.50703 * 119.99905 * 179.97438 * 15 14 11 18 18 S 1.81001 * 109.46952 * 179.97438 * 17 15 14 19 19 C 1.76201 * 99.99682 * 180.02562 * 18 17 15 20 20 H 1.07995 * 120.00595 * 0.02562 * 19 18 17 21 21 C 1.38798 * 119.99758 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00311 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00020 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46848 * 89.99794 * 23 21 19 25 25 H 1.48498 * 109.46973 * 209.99784 * 23 21 19 26 26 H 1.48493 * 109.46930 * 329.99765 * 23 21 19 27 27 O 1.34086 * 106.58309 * 359.63016 * 5 4 3 28 28 N 1.20916 * 111.71816 * 0.40179 * 27 5 4 29 29 H 1.09007 * 109.46943 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47214 * 299.99825 * 1 2 3 31 31 H 1.09001 * 109.47024 * 60.00326 * 1 2 3 32 32 H 1.08002 * 128.01401 * 359.93935 * 4 3 2 33 33 H 1.09001 * 109.46953 * 210.00204 * 6 5 4 34 34 H 1.09001 * 109.47071 * 330.00058 * 6 5 4 35 35 H 1.00894 * 110.99904 * 303.95607 * 7 6 5 36 36 H 1.09002 * 109.46843 * 60.00161 * 10 8 7 37 37 H 1.08999 * 109.47023 * 179.97438 * 10 8 7 38 38 H 1.09001 * 109.46874 * 300.00091 * 10 8 7 39 39 H 1.09001 * 109.46874 * 300.00082 * 13 11 8 40 40 H 1.08999 * 109.47023 * 60.00204 * 13 11 8 41 41 H 1.09007 * 109.47206 * 180.02562 * 13 11 8 42 42 H 0.97001 * 119.99775 * 25.00186 * 14 11 8 43 43 H 1.08990 * 109.47129 * 299.99919 * 17 15 14 44 44 H 1.09000 * 109.46653 * 59.99987 * 17 15 14 45 45 H 0.97003 * 120.00074 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 3.4434 1.4527 0.0005 5 6 3.5396 2.8020 0.0050 6 6 4.8087 3.6146 0.0124 7 7 5.2266 3.8828 -1.3701 8 6 6.4638 4.6742 -1.4020 9 1 7.1030 4.3829 -0.5686 10 6 6.1212 6.1609 -1.2866 11 6 7.1974 4.4207 -2.7204 12 1 6.5581 4.7121 -3.5538 13 6 7.5399 2.9340 -2.8358 14 7 8.4309 5.2105 -2.7525 15 6 8.9765 5.5604 -3.9342 16 8 8.4466 5.2211 -4.9709 17 6 10.2451 6.3733 -3.9671 18 16 10.7217 6.6782 -5.6865 19 6 12.1904 7.6185 -5.4346 20 1 12.5281 7.8344 -4.4318 21 6 12.9133 8.0818 -6.5251 22 7 12.5020 7.8184 -7.7475 23 14 14.4708 9.0781 -6.2582 24 1 15.6380 8.1627 -6.1883 25 1 14.6517 10.0258 -7.3871 26 1 14.3606 9.8378 -4.9870 27 8 2.2850 3.2751 -0.0015 28 7 1.4699 2.3819 -0.0012 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 4.2447 0.7286 0.0019 33 1 4.6327 4.5584 0.5285 34 1 5.5926 3.0594 0.5277 35 1 5.3337 3.0239 -1.8885 36 1 5.5985 6.3415 -0.3472 37 1 7.0392 6.7481 -1.3098 38 1 5.4819 6.4522 -2.1200 39 1 8.1792 2.6427 -2.0024 40 1 6.6219 2.3468 -2.8121 41 1 8.0630 2.7535 -3.7750 42 1 8.8550 5.4816 -1.9232 43 1 10.0803 7.3245 -3.4613 44 1 11.0406 5.8259 -3.4616 45 1 13.0074 8.1419 -8.5096 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700392584.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:50:28 Heat of formation + Delta-G solvation = -34.620189 kcal Electronic energy + Delta-G solvation = -26494.669981 eV Core-core repulsion = 22448.555771 eV Total energy + Delta-G solvation = -4046.114210 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.93583 -40.89531 -39.85617 -38.82263 -35.99577 -34.56479 -34.22355 -33.33930 -31.87397 -30.56552 -29.83976 -28.57444 -27.63733 -26.51648 -24.49523 -24.36481 -22.21020 -21.67101 -21.46791 -19.83664 -19.11207 -18.84316 -17.90035 -17.76895 -17.46612 -16.86088 -16.55406 -16.48997 -16.38376 -16.17091 -16.00539 -15.24692 -15.20052 -14.80169 -14.71405 -14.57419 -14.38886 -14.08293 -13.71286 -13.33578 -13.17543 -13.14230 -13.02121 -12.87772 -12.86313 -12.73093 -12.57179 -12.46792 -12.34127 -12.12672 -11.72545 -11.55628 -11.12404 -10.91940 -10.65817 -10.31934 -10.24092 -10.09294 -9.46567 -8.64000 -8.32721 -6.10421 0.36025 1.20364 1.29415 1.43878 1.49228 1.59223 1.67258 1.76305 2.12156 2.28111 2.32719 3.01610 3.15996 3.26407 3.36905 3.61257 3.79534 3.91113 4.01477 4.03308 4.18074 4.20895 4.23959 4.28724 4.35213 4.49555 4.50951 4.55022 4.59520 4.62346 4.69360 4.77042 4.89402 4.93192 5.03801 5.06432 5.29521 5.43882 5.47136 5.51411 5.92914 5.93919 6.21731 6.30408 6.56731 7.08814 7.21098 7.31798 8.76397 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.038031 B = 0.001549 C = 0.001524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.074236 B =18068.851791 C =18364.578957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.297 6.297 3 C 0.189 3.811 4 C -0.229 4.229 5 C 0.010 3.990 6 C 0.139 3.861 7 N -0.692 5.692 8 C 0.096 3.904 9 H 0.087 0.913 10 C -0.144 4.144 11 C 0.140 3.860 12 H 0.064 0.936 13 C -0.165 4.165 14 N -0.703 5.703 15 C 0.537 3.463 16 O -0.566 6.566 17 C -0.129 4.129 18 S -0.154 6.154 19 C -0.546 4.546 20 H 0.084 0.916 21 C 0.013 3.987 22 N -0.912 5.912 23 Si 0.998 3.002 24 H -0.268 1.268 25 H -0.279 1.279 26 H -0.257 1.257 27 O 0.094 5.906 28 N -0.433 5.433 29 H 0.134 0.866 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.203 0.797 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.351 0.649 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.041 0.959 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.035 0.965 42 H 0.417 0.583 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.508 -13.142 24.640 32.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.204 6.204 3 C -0.008 4.008 4 C -0.252 4.252 5 C -0.054 4.054 6 C 0.011 3.989 7 N -0.329 5.329 8 C -0.013 4.013 9 H 0.105 0.895 10 C -0.202 4.202 11 C 0.035 3.965 12 H 0.082 0.918 13 C -0.223 4.223 14 N -0.358 5.358 15 C 0.322 3.678 16 O -0.444 6.444 17 C -0.280 4.280 18 S 0.073 5.927 19 C -0.693 4.693 20 H 0.102 0.898 21 C -0.191 4.191 22 N -0.549 5.549 23 Si 0.819 3.181 24 H -0.193 1.193 25 H -0.205 1.205 26 H -0.181 1.181 27 O 0.034 5.966 28 N -0.161 5.161 29 H 0.152 0.848 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.220 0.780 33 H 0.130 0.870 34 H 0.121 0.879 35 H 0.173 0.827 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.060 0.940 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.054 0.946 42 H 0.254 0.746 43 H 0.128 0.872 44 H 0.129 0.871 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.962 -13.037 22.694 32.916 hybrid contribution 2.352 -0.058 1.067 2.583 sum -17.610 -13.095 23.762 32.345 Atomic orbital electron populations 1.23278 0.75496 1.05903 1.02070 1.86173 1.24037 1.20834 1.89363 1.22440 0.92052 0.85786 1.00502 1.22193 0.94082 0.96236 1.12665 1.24568 0.88202 0.93019 0.99637 1.20605 0.87500 0.99967 0.90874 1.60445 1.33792 1.25586 1.13060 1.21592 0.89315 0.94940 0.95488 0.89535 1.21851 1.01749 0.94187 1.02436 1.21028 0.85263 0.91284 0.98919 0.91795 1.22226 1.02742 0.94998 1.02370 1.45659 1.26764 1.55572 1.07768 1.20013 0.84938 0.78927 0.83891 1.90701 1.63371 1.55781 1.34511 1.23374 0.98342 1.03352 1.02979 1.85615 1.32187 1.70472 1.04428 1.23214 1.10850 1.39122 0.96154 0.89823 1.26116 1.01924 0.97119 0.93957 1.70189 1.40569 1.45104 0.98992 0.84966 0.76917 0.77742 0.78436 1.19330 1.20453 1.18102 1.84786 1.13158 1.29951 1.68705 1.74154 1.16691 0.97298 1.27920 0.84836 0.92339 0.92743 0.78032 0.86978 0.87873 0.82664 0.90722 0.91843 0.93989 0.90184 0.89799 0.94586 0.74579 0.87171 0.87131 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.73 113.37 1.22 1.53 16 2 O -0.30 -5.28 10.57 -90.22 -0.95 -6.23 16 3 C 0.19 3.59 8.01 85.79 0.69 4.28 16 4 C -0.23 -3.01 11.10 22.50 0.25 -2.76 16 5 C 0.01 0.13 6.99 25.00 0.17 0.30 16 6 C 0.14 0.95 6.04 85.56 0.52 1.46 16 7 N -0.69 -7.57 6.30 -495.58 -3.12 -10.69 16 8 C 0.10 1.08 2.28 44.91 0.10 1.18 16 9 H 0.09 0.49 7.80 -2.39 -0.02 0.47 16 10 C -0.14 -1.94 9.26 71.98 0.67 -1.28 16 11 C 0.14 2.67 2.29 44.99 0.10 2.77 16 12 H 0.06 1.71 7.58 -2.39 -0.02 1.70 16 13 C -0.16 -2.79 9.25 71.98 0.67 -2.12 16 14 N -0.70 -15.30 4.38 -442.53 -1.94 -17.24 16 15 C 0.54 18.65 7.81 87.66 0.68 19.34 16 16 O -0.57 -25.53 15.52 -3.03 -0.05 -25.58 16 17 C -0.13 -4.88 6.16 71.24 0.44 -4.45 16 18 S -0.15 -8.45 20.57 -56.49 -1.16 -9.61 16 19 C -0.55 -30.75 9.50 67.95 0.65 -30.11 16 20 H 0.08 4.35 7.80 -2.91 -0.02 4.32 16 21 C 0.01 0.76 5.49 84.86 0.47 1.23 16 22 N -0.91 -55.85 13.22 21.65 0.29 -55.56 16 23 Si 1.00 43.11 29.55 68.60 2.03 45.14 16 24 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 25 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 26 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 27 O 0.09 1.79 11.19 71.21 0.80 2.58 16 28 N -0.43 -9.27 11.54 -172.59 -1.99 -11.27 16 29 H 0.13 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.20 1.43 8.06 -2.91 -0.02 1.41 16 33 H 0.11 0.60 7.44 -2.39 -0.02 0.58 16 34 H 0.10 0.12 8.05 -2.39 -0.02 0.11 16 35 H 0.35 3.73 6.15 -89.70 -0.55 3.18 16 36 H 0.07 0.74 7.45 -2.39 -0.02 0.72 16 37 H 0.06 0.84 7.44 -2.39 -0.02 0.83 16 38 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.08 1.05 6.21 -2.39 -0.01 1.04 16 41 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 42 H 0.42 5.93 8.39 -92.71 -0.78 5.15 16 43 H 0.11 3.72 8.14 -2.40 -0.02 3.70 16 44 H 0.11 3.71 8.14 -2.40 -0.02 3.69 16 45 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -82.32 394.91 0.21 -82.12 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -0.31 Total: 14.95 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: 6.62 Total: -8.62 kcal Atomic # 7 Polarization: -87.99 SS G_CDS: -6.77 Total: -94.76 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: -0.20 Total: -29.23 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.16 Total: -9.61 kcal Total: -82.32 0.21 -82.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700392584.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.497 kcal (2) G-P(sol) polarization free energy of solvation -82.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds