Wall clock time and date at job start Wed Apr 1 2020 02:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08997 * 109.46718 * 2 1 4 4 C 1.52998 * 109.46782 * 240.00444 * 2 1 3 5 5 N 1.46503 * 109.47005 * 185.00083 * 4 2 1 6 6 C 1.34770 * 120.00325 * 180.02562 * 5 4 2 7 7 O 1.21289 * 120.00046 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00346 * 179.97438 * 6 5 4 9 9 S 1.80996 * 109.47392 * 179.97438 * 8 6 5 10 10 C 1.76193 * 100.00224 * 179.97438 * 9 8 6 11 11 H 1.08002 * 120.00131 * 0.02562 * 10 9 8 12 12 C 1.38795 * 120.00467 * 179.97438 * 10 9 8 13 13 N 1.31632 * 120.00659 * 179.97438 * 12 10 9 14 14 Si 1.86807 * 119.99796 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.46930 * 90.00009 * 14 12 10 16 16 H 1.48493 * 109.47458 * 209.99911 * 14 12 10 17 17 H 1.48496 * 109.46987 * 330.00286 * 14 12 10 18 18 N 1.46495 * 109.47126 * 120.00036 * 2 1 3 19 19 C 1.46502 * 119.99950 * 60.00154 * 18 2 1 20 20 C 1.34775 * 120.00032 * 240.00047 * 18 2 1 21 21 O 1.21274 * 120.00094 * 5.05160 * 20 18 2 22 22 C 1.50705 * 119.99968 * 185.05331 * 20 18 2 23 23 C 1.50689 * 115.55096 * 276.63734 * 22 20 18 24 24 N 1.34781 * 120.00273 * 304.61028 * 23 22 20 25 25 O 1.21282 * 120.00397 * 124.60169 * 23 22 20 26 26 C 1.52999 * 117.49595 * 130.92710 * 22 20 18 27 27 C 1.53000 * 60.00348 * 252.51246 * 26 22 20 28 28 H 1.09004 * 109.46690 * 299.99644 * 1 2 3 29 29 H 1.08996 * 109.46989 * 60.00012 * 1 2 3 30 30 H 1.08997 * 109.46718 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47344 * 64.99722 * 4 2 1 32 32 H 1.09002 * 109.46993 * 304.99551 * 4 2 1 33 33 H 0.97000 * 119.99452 * 359.97438 * 5 4 2 34 34 H 1.09002 * 109.47006 * 299.99755 * 8 6 5 35 35 H 1.08998 * 109.46744 * 59.99457 * 8 6 5 36 36 H 0.96998 * 120.00360 * 180.02562 * 13 12 10 37 37 H 1.09000 * 109.47156 * 87.61907 * 19 18 2 38 38 H 1.09001 * 109.46965 * 207.62168 * 19 18 2 39 39 H 1.09001 * 109.47217 * 327.61944 * 19 18 2 40 40 H 0.96995 * 119.99779 * 5.42250 * 24 23 22 41 41 H 0.96999 * 120.00453 * 185.43553 * 24 23 22 42 42 H 1.09001 * 117.50568 * 0.02562 * 26 22 20 43 43 H 1.09007 * 117.49529 * 145.02189 * 26 22 20 44 44 H 1.08998 * 117.49701 * 252.51390 * 27 26 22 45 45 H 1.08994 * 117.49851 * 107.48796 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8263 -1.1907 6 6 4.1731 -1.4281 -2.1913 7 8 3.5700 -1.8831 -3.1402 8 6 5.6751 -1.5358 -2.1312 9 16 6.2784 -2.3891 -3.6091 10 6 8.0102 -2.3749 -3.2850 11 1 8.3866 -1.9219 -2.3797 12 6 8.8909 -2.9469 -4.1926 13 7 10.1847 -2.9359 -3.9508 14 14 8.2399 -3.7324 -5.7575 15 1 8.1810 -2.7128 -6.8356 16 1 9.1428 -4.8369 -6.1696 17 1 6.8784 -4.2717 -5.5113 18 7 2.0184 -0.6906 1.1961 19 6 1.6645 -2.0932 1.4279 20 6 2.7933 -0.0356 2.0833 21 8 3.0110 1.1488 1.9399 22 6 3.3892 -0.7751 3.2534 23 6 2.4858 -0.9365 4.4486 24 7 1.9269 0.1476 5.0223 25 8 2.2613 -2.0419 4.8943 26 6 4.8850 -0.5912 3.5176 27 6 4.3657 -1.9125 2.9472 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.7516 -0.1582 -2.1370 32 1 1.6054 -1.7197 -1.2952 33 1 3.9824 -0.4622 -0.4320 34 1 6.1094 -0.5371 -2.0852 35 1 5.9637 -2.0988 -1.2437 36 1 10.8002 -3.3353 -4.5853 37 1 2.3927 -2.7378 0.9357 38 1 1.6652 -2.2958 2.4989 39 1 0.6723 -2.2895 1.0216 40 1 2.0419 1.0226 4.6201 41 1 1.4098 0.0527 5.8375 42 1 5.4380 0.0648 2.8454 43 1 5.2158 -0.5869 4.5563 44 1 4.3548 -2.7774 3.6105 45 1 4.5770 -2.1260 1.8994 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701170898.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:50 Heat of formation + Delta-G solvation = -110.326345 kcal Electronic energy + Delta-G solvation = -28338.545601 eV Core-core repulsion = 24289.148526 eV Total energy + Delta-G solvation = -4049.397075 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.09379 -40.79249 -40.07923 -37.96634 -37.04362 -35.30163 -34.70925 -34.66680 -32.87308 -30.94141 -28.04668 -27.89338 -27.03182 -26.60297 -23.86288 -23.42433 -21.83160 -21.45399 -20.18243 -19.80086 -19.00982 -18.25720 -17.96530 -17.78668 -17.39389 -17.06907 -16.89158 -16.62660 -16.31336 -15.86829 -15.69939 -15.41966 -15.05573 -14.99065 -14.80280 -14.46053 -14.23627 -14.03908 -13.96938 -13.54525 -13.35083 -13.25902 -13.09937 -13.00111 -12.92258 -12.62896 -12.60362 -12.28998 -11.98781 -11.86231 -11.72615 -11.28773 -11.16842 -11.06023 -10.86215 -10.80437 -10.54379 -10.19753 -9.87321 -8.99442 -8.51110 -6.21990 0.98004 1.12992 1.31986 1.35661 1.46614 1.53124 1.54991 1.68010 2.19885 2.25914 2.26747 2.66903 2.71455 2.87214 3.23439 3.57095 3.66311 3.67523 3.79241 3.81172 4.00185 4.13134 4.18068 4.20649 4.43705 4.51626 4.55320 4.57259 4.62244 4.64644 4.76301 4.82681 4.87845 4.97004 5.05756 5.22561 5.30280 5.42651 5.71064 5.73284 6.10844 6.11982 6.20427 6.33912 6.87515 6.93979 7.11606 7.11917 8.61348 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.015057 B = 0.002761 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.191360 B =10138.574759 C =11300.489629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.130 3.870 3 H 0.102 0.898 4 C 0.111 3.889 5 N -0.711 5.711 6 C 0.538 3.462 7 O -0.556 6.556 8 C -0.113 4.113 9 S -0.169 6.169 10 C -0.529 4.529 11 H 0.061 0.939 12 C 0.045 3.955 13 N -0.918 5.918 14 Si 0.914 3.086 15 H -0.263 1.263 16 H -0.260 1.260 17 H -0.235 1.235 18 N -0.595 5.595 19 C 0.070 3.930 20 C 0.556 3.444 21 O -0.550 6.550 22 C -0.204 4.204 23 C 0.567 3.433 24 N -0.830 5.830 25 O -0.563 6.563 26 C -0.118 4.118 27 C -0.130 4.130 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.405 0.595 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.277 0.723 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.414 0.586 41 H 0.414 0.586 42 H 0.114 0.886 43 H 0.121 0.879 44 H 0.116 0.884 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.797 7.581 18.368 29.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.027 3.973 3 H 0.120 0.880 4 C -0.013 4.013 5 N -0.364 5.364 6 C 0.323 3.677 7 O -0.434 6.434 8 C -0.264 4.264 9 S 0.057 5.943 10 C -0.676 4.676 11 H 0.080 0.920 12 C -0.160 4.160 13 N -0.556 5.556 14 Si 0.736 3.264 15 H -0.188 1.188 16 H -0.184 1.184 17 H -0.159 1.159 18 N -0.328 5.328 19 C -0.073 4.073 20 C 0.343 3.657 21 O -0.428 6.428 22 C -0.211 4.211 23 C 0.350 3.650 24 N -0.394 5.394 25 O -0.442 6.442 26 C -0.156 4.156 27 C -0.167 4.167 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.241 0.759 34 H 0.126 0.874 35 H 0.131 0.869 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.111 0.889 40 H 0.244 0.756 41 H 0.247 0.753 42 H 0.132 0.868 43 H 0.139 0.861 44 H 0.134 0.866 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -22.588 6.649 16.828 28.941 hybrid contribution 1.239 0.744 0.988 1.751 sum -21.349 7.393 17.816 28.773 Atomic orbital electron populations 1.22035 0.91328 1.03849 1.03872 1.21425 0.96620 0.97331 0.81932 0.87998 1.21870 0.79093 1.01961 0.98363 1.45684 1.08060 1.59653 1.23034 1.19871 0.88489 0.77140 0.82161 1.90697 1.70179 1.48353 1.34212 1.23267 0.94998 1.05444 1.02697 1.84661 1.04460 1.75987 1.29146 1.22457 0.90828 1.44006 1.10348 0.92045 1.25569 0.94339 0.95097 1.01002 1.70016 1.02719 1.44672 1.38145 0.85869 0.80864 0.79789 0.79863 1.18767 1.18394 1.15873 1.47911 1.49417 1.13409 1.22018 1.22006 1.02500 0.79926 1.02818 1.19322 0.77802 0.86136 0.82410 1.90733 1.60821 1.15619 1.75627 1.21356 0.94601 1.09344 0.95758 1.19024 0.78958 0.84355 0.82670 1.43679 1.54899 1.10347 1.30464 1.90771 1.62089 1.26273 1.65084 1.23203 0.88321 0.99516 1.04561 1.23186 0.96891 0.92768 1.03886 0.91440 0.89485 0.90790 0.90057 0.90632 0.75929 0.87412 0.86933 0.91370 0.91966 0.90693 0.88869 0.75588 0.75277 0.86787 0.86117 0.86599 0.87045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.17 71.99 0.66 -0.74 16 2 C 0.13 1.80 2.80 45.00 0.13 1.93 16 3 H 0.10 1.67 6.91 -2.39 -0.02 1.66 16 4 C 0.11 2.02 4.97 86.38 0.43 2.45 16 5 N -0.71 -16.42 5.39 -463.05 -2.49 -18.92 16 6 C 0.54 17.79 7.85 87.66 0.69 18.47 16 7 O -0.56 -22.61 15.86 -3.06 -0.05 -22.66 16 8 C -0.11 -4.19 6.16 71.24 0.44 -3.75 16 9 S -0.17 -8.41 18.55 -56.49 -1.05 -9.46 16 10 C -0.53 -30.54 10.04 67.95 0.68 -29.86 16 11 H 0.06 3.75 8.03 -2.91 -0.02 3.73 16 12 C 0.05 2.64 5.50 84.86 0.47 3.11 16 13 N -0.92 -55.71 13.97 21.65 0.30 -55.41 16 14 Si 0.91 44.64 27.74 68.60 1.90 46.54 16 15 H -0.26 -12.55 7.11 99.48 0.71 -11.85 16 16 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 17 H -0.23 -11.38 6.74 99.48 0.67 -10.71 16 18 N -0.60 -8.53 2.24 -822.58 -1.85 -10.38 16 19 C 0.07 0.90 8.72 127.77 1.11 2.01 16 20 C 0.56 9.50 6.37 87.66 0.56 10.05 16 21 O -0.55 -11.99 16.38 -3.01 -0.05 -12.04 16 22 C -0.20 -3.15 1.18 -53.67 -0.06 -3.22 16 23 C 0.57 9.29 6.59 87.65 0.58 9.87 16 24 N -0.83 -8.50 8.85 -173.54 -1.54 -10.03 16 25 O -0.56 -12.86 16.76 -3.04 -0.05 -12.91 16 26 C -0.12 -1.65 9.89 30.59 0.30 -1.35 16 27 C -0.13 -1.95 8.75 30.60 0.27 -1.68 16 28 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 0.57 6.67 -2.39 -0.02 0.56 16 31 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.08 1.39 7.84 -2.39 -0.02 1.37 16 33 H 0.41 8.29 7.87 -92.71 -0.73 7.56 16 34 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 35 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 36 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 37 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.07 1.10 5.53 -2.39 -0.01 1.08 16 39 H 0.09 0.89 6.43 -2.39 -0.02 0.87 16 40 H 0.41 3.46 8.72 -92.71 -0.81 2.65 16 41 H 0.41 2.90 8.93 -92.71 -0.83 2.07 16 42 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.12 1.39 8.14 -2.38 -0.02 1.38 16 44 H 0.12 1.82 7.83 -2.39 -0.02 1.80 16 45 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -77.86 391.02 0.03 -77.83 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: -1.35 Total: 20.14 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 6.25 Total: 7.29 kcal Atomic # 7 Polarization: -89.16 SS G_CDS: -5.57 Total: -94.73 kcal Atomic # 8 Polarization: -47.46 SS G_CDS: -0.15 Total: -47.61 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.90 Total: 46.54 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.05 Total: -9.46 kcal Total: -77.86 0.03 -77.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701170898.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.501 kcal (2) G-P(sol) polarization free energy of solvation -77.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds