Wall clock time and date at job start Wed Apr 1 2020 02:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21283 * 119.99503 * 2 1 4 4 N 1.34773 * 120.00081 * 179.72727 * 2 1 3 5 5 C 1.46506 * 119.99968 * 180.02562 * 4 2 1 6 6 C 1.50690 * 109.47072 * 179.97438 * 5 4 2 7 7 O 1.21281 * 120.00549 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00144 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00259 * 180.02562 * 8 6 5 10 10 H 1.08991 * 112.85032 * 25.32951 * 9 8 6 11 11 C 1.53786 * 113.61491 * 156.52831 * 9 8 6 12 12 C 1.53774 * 87.08175 * 139.97674 * 11 9 8 13 13 H 1.09001 * 113.61403 * 89.19355 * 12 11 9 14 14 C 1.53002 * 113.61785 * 220.01931 * 12 11 9 15 15 N 1.46497 * 109.47460 * 185.00109 * 14 12 11 16 16 C 1.34778 * 120.00110 * 179.97438 * 15 14 12 17 17 O 1.21276 * 119.99798 * 359.97438 * 16 15 14 18 18 C 1.50700 * 119.99977 * 179.97438 * 16 15 14 19 19 S 1.80996 * 109.47025 * 179.97438 * 18 16 15 20 20 C 1.76199 * 99.99826 * 180.02562 * 19 18 16 21 21 H 1.08001 * 120.00460 * 0.02562 * 20 19 18 22 22 C 1.38805 * 119.99753 * 180.02562 * 20 19 18 23 23 N 1.31625 * 119.99920 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99917 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47339 * 89.99652 * 24 22 20 26 26 H 1.48497 * 109.47244 * 210.00138 * 24 22 20 27 27 H 1.48504 * 109.47038 * 329.99445 * 24 22 20 28 28 C 1.53780 * 113.61192 * 254.13430 * 9 8 6 29 29 H 1.08995 * 109.47415 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.46564 * 120.00303 * 1 2 3 31 31 H 1.08998 * 109.47012 * 239.99357 * 1 2 3 32 32 H 0.96998 * 120.00525 * 359.97438 * 4 2 1 33 33 H 1.09004 * 109.46587 * 299.99661 * 5 4 2 34 34 H 1.08998 * 109.47213 * 59.99069 * 5 4 2 35 35 H 0.97005 * 119.99569 * 359.97438 * 8 6 5 36 36 H 1.08996 * 113.61345 * 254.53006 * 11 9 8 37 37 H 1.08999 * 113.61321 * 25.42900 * 11 9 8 38 38 H 1.08998 * 109.46746 * 304.99907 * 14 12 11 39 39 H 1.08993 * 109.47128 * 64.99569 * 14 12 11 40 40 H 0.97008 * 119.99533 * 359.97438 * 15 14 12 41 41 H 1.09004 * 109.47324 * 300.00448 * 18 16 15 42 42 H 1.09007 * 109.47207 * 59.99938 * 18 16 15 43 43 H 0.97004 * 119.99902 * 180.02562 * 23 22 20 44 44 H 1.09009 * 113.61512 * 334.56744 * 28 9 8 45 45 H 1.09000 * 113.61887 * 105.46730 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0056 5 6 3.6460 -1.1671 0.0061 6 6 4.1483 -2.5878 0.0134 7 8 3.3603 -3.5097 0.0182 8 7 5.4734 -2.8341 0.0146 9 6 5.9618 -4.2153 0.0211 10 1 5.2470 -4.9190 -0.4053 11 6 7.3857 -4.3679 -0.5393 12 6 7.6359 -5.3838 0.5876 13 1 7.3803 -6.4082 0.3166 14 6 9.0228 -5.2656 1.2227 15 7 9.2079 -6.3449 2.1959 16 6 10.3634 -6.4419 2.8830 17 8 11.2500 -5.6360 2.6952 18 6 10.5535 -7.5519 3.8844 19 16 12.1949 -7.4129 4.6346 20 6 12.1485 -8.7925 5.7296 21 1 11.2689 -9.4176 5.7739 22 6 13.2426 -9.0759 6.5355 23 7 14.3148 -8.3144 6.4812 24 14 13.1938 -10.5389 7.6959 25 1 13.7108 -11.7428 6.9969 26 1 14.0376 -10.2562 8.8847 27 1 11.7940 -10.7808 8.1289 28 6 6.5302 -4.6612 1.3786 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3632 -0.5139 -0.8900 31 1 -0.3633 -0.5139 0.8899 32 1 1.6960 -2.0072 0.0099 33 1 4.0096 -0.6573 -0.8861 34 1 4.0090 -0.6491 0.8938 35 1 6.1037 -2.0968 0.0104 36 1 7.4177 -4.8057 -1.5370 37 1 7.9880 -3.4634 -0.4534 38 1 9.7851 -5.3409 0.4473 39 1 9.1109 -4.3031 1.7265 40 1 8.4988 -6.9897 2.3457 41 1 9.7915 -7.4759 4.6601 42 1 10.4648 -8.5146 3.3810 43 1 15.0795 -8.5127 7.0441 44 1 6.8982 -3.8371 1.9899 45 1 5.8726 -5.3356 1.9272 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001702492653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:18 Heat of formation + Delta-G solvation = -99.897152 kcal Electronic energy + Delta-G solvation = -25615.510504 eV Core-core repulsion = 21566.565673 eV Total energy + Delta-G solvation = -4048.944832 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.94800 -40.04189 -39.28743 -38.52611 -35.02502 -34.78457 -33.58718 -32.43922 -31.01589 -29.93427 -28.09812 -26.75876 -26.18405 -25.46269 -22.90492 -21.18754 -21.12893 -20.63624 -19.88676 -18.18560 -17.89222 -17.30424 -16.66306 -16.51922 -16.39869 -16.29211 -15.69935 -15.43403 -15.42412 -15.04488 -14.81276 -14.32324 -14.00634 -13.90071 -13.65488 -13.41624 -13.19557 -13.08245 -12.95134 -12.70476 -12.59885 -12.54825 -12.38312 -11.90089 -11.61893 -11.15711 -11.07315 -11.03387 -10.81660 -10.76124 -10.53153 -10.45785 -9.82602 -9.77731 -9.57587 -9.41607 -9.08094 -8.89946 -8.24952 -6.51241 -6.22767 -3.93389 1.93234 2.11095 2.24499 2.90571 3.02734 3.08267 3.21580 3.27227 3.31249 3.67405 3.93654 4.05768 4.16598 4.19557 4.32081 4.33848 4.37545 4.69034 4.71883 4.80968 4.86536 4.89378 5.06954 5.12534 5.14944 5.23557 5.29836 5.31452 5.38178 5.50888 5.56855 5.62939 5.71948 5.76191 5.86493 5.89179 6.05726 6.12770 6.59829 6.84112 6.93203 7.52905 7.58524 7.65666 7.68752 8.34138 8.59524 9.22655 10.84692 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.024305 B = 0.001363 C = 0.001339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.748782 B =20535.555874 C =20907.797806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.513 3.487 3 O -0.548 6.548 4 N -0.721 5.721 5 C 0.097 3.903 6 C 0.511 3.489 7 O -0.538 6.538 8 N -0.713 5.713 9 C 0.121 3.879 10 H 0.117 0.883 11 C -0.135 4.135 12 C -0.120 4.120 13 H 0.102 0.898 14 C 0.134 3.866 15 N -0.738 5.738 16 C 0.531 3.469 17 O -0.519 6.519 18 C -0.154 4.154 19 S -0.061 6.061 20 C -0.536 4.536 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 C -0.146 4.146 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.413 0.587 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.406 0.594 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.398 0.602 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.089 0.911 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.329 11.858 -16.825 33.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.300 3.700 3 O -0.425 6.425 4 N -0.378 5.378 5 C -0.031 4.031 6 C 0.297 3.703 7 O -0.415 6.415 8 N -0.364 5.364 9 C 0.017 3.983 10 H 0.135 0.865 11 C -0.173 4.173 12 C -0.139 4.139 13 H 0.120 0.880 14 C 0.010 3.990 15 N -0.393 5.393 16 C 0.317 3.683 17 O -0.393 6.393 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 C -0.185 4.185 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.251 0.749 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.241 0.759 36 H 0.099 0.901 37 H 0.111 0.889 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.108 0.892 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -24.795 13.344 -17.074 32.930 hybrid contribution -1.212 -2.296 1.063 2.806 sum -26.007 11.048 -16.011 32.477 Atomic orbital electron populations 1.21906 0.90945 1.05779 1.04624 1.20878 0.90877 0.82944 0.75265 1.90747 1.70882 1.31399 1.49472 1.45793 1.05853 1.10099 1.76022 1.21078 0.82703 0.94214 1.05089 1.20552 0.83000 0.91049 0.75711 1.90710 1.55175 1.45959 1.49641 1.45921 1.06636 1.09228 1.74632 1.22604 0.95069 0.83054 0.97606 0.86527 1.23327 0.95076 0.99981 0.98961 1.22636 0.94740 0.99705 0.96830 0.88030 1.21221 0.95137 0.91110 0.91577 1.45991 1.18181 1.32125 1.43002 1.20314 0.81283 0.85867 0.80829 1.90700 1.41249 1.42119 1.65229 1.23534 1.07740 0.99109 1.00066 1.85390 1.09172 1.40024 1.48832 1.22872 1.04542 1.14660 1.26361 0.90931 1.24987 0.94539 0.97228 0.96773 1.70016 1.04454 1.37389 1.38436 0.86171 0.78237 0.81417 0.79693 1.20257 1.20737 1.19703 1.23612 0.97496 1.00692 0.96704 0.88687 0.89154 0.89100 0.74891 0.88211 0.88152 0.75914 0.90127 0.88929 0.91411 0.91520 0.76808 0.89246 0.89234 0.92175 0.89203 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.58 10.32 36.01 0.37 -0.21 16 2 C 0.51 3.67 7.94 -10.98 -0.09 3.58 16 3 O -0.55 -6.21 17.09 5.56 0.09 -6.11 16 4 N -0.72 -4.35 5.53 -61.47 -0.34 -4.69 16 5 C 0.10 0.53 6.15 -5.20 -0.03 0.49 16 6 C 0.51 3.36 7.90 -10.99 -0.09 3.27 16 7 O -0.54 -5.27 15.29 5.56 0.08 -5.18 16 8 N -0.71 -3.45 5.36 -53.02 -0.28 -3.74 16 9 C 0.12 0.69 4.21 -67.12 -0.28 0.40 16 10 H 0.12 0.80 7.50 -51.93 -0.39 0.41 16 11 C -0.13 -0.66 7.39 -25.92 -0.19 -0.85 16 12 C -0.12 -0.76 3.75 -89.72 -0.34 -1.10 16 13 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 14 C 0.13 1.34 5.51 -4.04 -0.02 1.32 16 15 N -0.74 -9.14 5.56 -60.30 -0.33 -9.47 16 16 C 0.53 9.62 7.85 -10.98 -0.09 9.54 16 17 O -0.52 -11.56 15.86 5.56 0.09 -11.47 16 18 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 20 C -0.54 -15.21 9.50 30.94 0.29 -14.92 16 21 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.08 13.22 55.49 0.73 -25.34 16 24 Si 0.92 21.30 29.55 -169.99 -5.02 16.28 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 C -0.15 -0.94 7.45 -25.83 -0.19 -1.13 16 29 H 0.09 0.34 8.12 -51.93 -0.42 -0.08 16 30 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.41 2.19 7.44 -40.82 -0.30 1.89 16 33 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.41 1.03 8.71 -40.82 -0.36 0.67 16 36 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.09 0.40 8.07 -51.93 -0.42 -0.02 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.73 7.85 -51.93 -0.41 0.32 16 40 H 0.40 3.80 8.47 -40.82 -0.35 3.45 16 41 H 0.09 1.64 8.14 -51.91 -0.42 1.21 16 42 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 43 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.09 0.62 7.90 -51.92 -0.41 0.21 16 45 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 400.57 15.07 6.04 6.04 Total: -1.00 -39.00 400.57 -8.51 -47.51 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -6.82 Total: 0.45 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -0.53 Total: -0.42 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: -0.23 Total: -43.24 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: 0.27 Total: -22.77 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -39.00 -8.51 -47.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001702492653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.388 kcal (2) G-P(sol) polarization free energy of solvation -39.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds