Wall clock time and date at job start Wed Apr 1 2020 02:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21283 * 119.99503 * 2 1 4 4 N 1.34773 * 120.00081 * 179.72727 * 2 1 3 5 5 C 1.46506 * 119.99968 * 180.02562 * 4 2 1 6 6 C 1.50690 * 109.47072 * 179.97438 * 5 4 2 7 7 O 1.21281 * 120.00549 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00144 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00259 * 180.02562 * 8 6 5 10 10 H 1.08991 * 112.85032 * 25.32951 * 9 8 6 11 11 C 1.53786 * 113.61491 * 156.52831 * 9 8 6 12 12 C 1.53774 * 87.08175 * 139.97674 * 11 9 8 13 13 H 1.09001 * 113.61403 * 89.19355 * 12 11 9 14 14 C 1.53002 * 113.61785 * 220.01931 * 12 11 9 15 15 N 1.46497 * 109.47460 * 185.00109 * 14 12 11 16 16 C 1.34778 * 120.00110 * 179.97438 * 15 14 12 17 17 O 1.21276 * 119.99798 * 359.97438 * 16 15 14 18 18 C 1.50700 * 119.99977 * 179.97438 * 16 15 14 19 19 S 1.80996 * 109.47025 * 179.97438 * 18 16 15 20 20 C 1.76199 * 99.99826 * 180.02562 * 19 18 16 21 21 H 1.08001 * 120.00460 * 0.02562 * 20 19 18 22 22 C 1.38805 * 119.99753 * 180.02562 * 20 19 18 23 23 N 1.31625 * 119.99920 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99917 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47339 * 89.99652 * 24 22 20 26 26 H 1.48497 * 109.47244 * 210.00138 * 24 22 20 27 27 H 1.48504 * 109.47038 * 329.99445 * 24 22 20 28 28 C 1.53780 * 113.61192 * 254.13430 * 9 8 6 29 29 H 1.08995 * 109.47415 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.46564 * 120.00303 * 1 2 3 31 31 H 1.08998 * 109.47012 * 239.99357 * 1 2 3 32 32 H 0.96998 * 120.00525 * 359.97438 * 4 2 1 33 33 H 1.09004 * 109.46587 * 299.99661 * 5 4 2 34 34 H 1.08998 * 109.47213 * 59.99069 * 5 4 2 35 35 H 0.97005 * 119.99569 * 359.97438 * 8 6 5 36 36 H 1.08996 * 113.61345 * 254.53006 * 11 9 8 37 37 H 1.08999 * 113.61321 * 25.42900 * 11 9 8 38 38 H 1.08998 * 109.46746 * 304.99907 * 14 12 11 39 39 H 1.08993 * 109.47128 * 64.99569 * 14 12 11 40 40 H 0.97008 * 119.99533 * 359.97438 * 15 14 12 41 41 H 1.09004 * 109.47324 * 300.00448 * 18 16 15 42 42 H 1.09007 * 109.47207 * 59.99938 * 18 16 15 43 43 H 0.97004 * 119.99902 * 180.02562 * 23 22 20 44 44 H 1.09009 * 113.61512 * 334.56744 * 28 9 8 45 45 H 1.09000 * 113.61887 * 105.46730 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0056 5 6 3.6460 -1.1671 0.0061 6 6 4.1483 -2.5878 0.0134 7 8 3.3603 -3.5097 0.0182 8 7 5.4734 -2.8341 0.0146 9 6 5.9618 -4.2153 0.0211 10 1 5.2470 -4.9190 -0.4053 11 6 7.3857 -4.3679 -0.5393 12 6 7.6359 -5.3838 0.5876 13 1 7.3803 -6.4082 0.3166 14 6 9.0228 -5.2656 1.2227 15 7 9.2079 -6.3449 2.1959 16 6 10.3634 -6.4419 2.8830 17 8 11.2500 -5.6360 2.6952 18 6 10.5535 -7.5519 3.8844 19 16 12.1949 -7.4129 4.6346 20 6 12.1485 -8.7925 5.7296 21 1 11.2689 -9.4176 5.7739 22 6 13.2426 -9.0759 6.5355 23 7 14.3148 -8.3144 6.4812 24 14 13.1938 -10.5389 7.6959 25 1 13.7108 -11.7428 6.9969 26 1 14.0376 -10.2562 8.8847 27 1 11.7940 -10.7808 8.1289 28 6 6.5302 -4.6612 1.3786 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3632 -0.5139 -0.8900 31 1 -0.3633 -0.5139 0.8899 32 1 1.6960 -2.0072 0.0099 33 1 4.0096 -0.6573 -0.8861 34 1 4.0090 -0.6491 0.8938 35 1 6.1037 -2.0968 0.0104 36 1 7.4177 -4.8057 -1.5370 37 1 7.9880 -3.4634 -0.4534 38 1 9.7851 -5.3409 0.4473 39 1 9.1109 -4.3031 1.7265 40 1 8.4988 -6.9897 2.3457 41 1 9.7915 -7.4759 4.6601 42 1 10.4648 -8.5146 3.3810 43 1 15.0795 -8.5127 7.0441 44 1 6.8982 -3.8371 1.9899 45 1 5.8726 -5.3356 1.9272 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001702492653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:17 Heat of formation + Delta-G solvation = -131.745695 kcal Electronic energy + Delta-G solvation = -25616.891561 eV Core-core repulsion = 21566.565673 eV Total energy + Delta-G solvation = -4050.325888 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.49900 -40.78271 -40.29682 -39.32611 -35.84357 -35.49280 -34.58625 -34.38773 -31.54696 -31.18019 -28.80040 -27.77352 -27.36437 -26.65765 -23.56629 -21.85746 -21.68605 -21.64354 -20.65396 -19.75995 -18.66980 -18.02891 -17.68080 -17.26918 -17.15238 -17.01860 -16.87751 -16.67464 -16.30148 -16.12852 -15.88625 -15.66548 -14.91855 -14.82349 -14.64471 -14.41132 -14.16743 -13.98737 -13.55932 -13.40823 -13.35073 -13.21313 -13.16192 -12.98257 -12.90628 -12.87213 -12.62385 -12.25579 -11.79987 -11.65768 -11.39448 -11.14180 -11.13992 -11.05190 -10.88348 -10.31109 -10.27299 -10.10483 -10.02423 -8.66345 -8.34620 -6.12580 1.27847 1.41272 1.42600 1.47792 1.58066 1.58485 1.63442 1.79101 2.26760 2.32874 2.48456 2.99720 3.32197 3.46661 3.56003 3.60690 3.81491 3.84568 3.93371 4.04122 4.27783 4.29873 4.30911 4.33974 4.47068 4.52191 4.54743 4.66409 4.72038 4.79819 4.85425 4.87800 5.04259 5.06881 5.10591 5.23511 5.28225 5.41987 5.48819 5.58875 6.19900 6.41018 6.45592 6.53425 7.06889 7.06954 7.15234 7.27174 8.74634 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.024305 B = 0.001363 C = 0.001339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.748782 B =20535.555874 C =20907.797806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.508 3.492 3 O -0.596 6.596 4 N -0.717 5.717 5 C 0.097 3.903 6 C 0.514 3.486 7 O -0.571 6.571 8 N -0.703 5.703 9 C 0.124 3.876 10 H 0.108 0.892 11 C -0.123 4.123 12 C -0.110 4.110 13 H 0.115 0.885 14 C 0.132 3.868 15 N -0.712 5.712 16 C 0.532 3.468 17 O -0.568 6.568 18 C -0.131 4.131 19 S -0.152 6.152 20 C -0.548 4.548 21 H 0.083 0.917 22 C 0.015 3.985 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.268 1.268 26 H -0.278 1.278 27 H -0.258 1.258 28 C -0.146 4.146 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.418 0.582 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.418 0.582 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.416 0.584 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.271 0.729 44 H 0.086 0.914 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.540 10.650 -17.291 35.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.298 3.702 3 O -0.477 6.477 4 N -0.373 5.373 5 C -0.031 4.031 6 C 0.301 3.699 7 O -0.451 6.451 8 N -0.354 5.354 9 C 0.019 3.981 10 H 0.126 0.874 11 C -0.162 4.162 12 C -0.130 4.130 13 H 0.133 0.867 14 C 0.009 3.991 15 N -0.365 5.365 16 C 0.318 3.682 17 O -0.446 6.446 18 C -0.282 4.282 19 S 0.075 5.925 20 C -0.695 4.695 21 H 0.101 0.899 22 C -0.190 4.190 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.193 1.193 26 H -0.203 1.203 27 H -0.182 1.182 28 C -0.185 4.185 29 H 0.110 0.890 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.257 0.743 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.256 0.744 36 H 0.110 0.890 37 H 0.119 0.881 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.253 0.747 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.080 0.920 44 H 0.104 0.896 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -27.053 12.113 -17.568 34.456 hybrid contribution -0.607 -1.888 1.123 2.279 sum -27.659 10.225 -16.445 33.765 Atomic orbital electron populations 1.21937 0.88038 1.06240 1.06447 1.21548 0.92328 0.82291 0.74067 1.90722 1.72083 1.32968 1.51976 1.45842 1.06190 1.10107 1.75133 1.21135 0.82604 0.93574 1.05770 1.20677 0.83177 0.90983 0.75062 1.90696 1.56074 1.46908 1.51418 1.45848 1.06414 1.09531 1.73608 1.22494 0.95286 0.83174 0.97160 0.87370 1.23295 0.94233 0.99817 0.98857 1.22583 0.92163 1.00982 0.97231 0.86716 1.21397 0.97254 0.89786 0.90689 1.45769 1.16544 1.32572 1.41661 1.20046 0.82301 0.84918 0.80970 1.90688 1.43300 1.43733 1.66889 1.23387 1.03041 1.00986 1.00799 1.85560 1.15776 1.40944 1.50232 1.23215 1.05128 1.14694 1.26494 0.89937 1.26111 0.93915 1.00430 0.98563 1.70181 1.05375 1.39578 1.39645 0.84964 0.78893 0.77156 0.77033 1.19279 1.20312 1.18232 1.23601 0.97388 1.00548 0.96969 0.88952 0.87118 0.87281 0.74344 0.87275 0.87699 0.74431 0.89025 0.88066 0.92082 0.92221 0.74737 0.87343 0.87220 0.91991 0.89589 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.88 10.32 71.24 0.74 -0.15 16 2 C 0.51 6.95 7.94 87.66 0.70 7.65 16 3 O -0.60 -13.61 17.09 -3.04 -0.05 -13.66 16 4 N -0.72 -8.02 5.53 -466.79 -2.58 -10.60 16 5 C 0.10 0.96 6.15 85.63 0.53 1.49 16 6 C 0.51 6.14 7.90 87.65 0.69 6.83 16 7 O -0.57 -10.64 15.29 -3.03 -0.05 -10.69 16 8 N -0.70 -5.60 5.36 -440.05 -2.36 -7.96 16 9 C 0.12 1.15 4.21 45.52 0.19 1.34 16 10 H 0.11 1.29 7.50 -2.39 -0.02 1.27 16 11 C -0.12 -0.89 7.39 31.12 0.23 -0.66 16 12 C -0.11 -1.14 3.75 -10.21 -0.04 -1.17 16 13 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 14 C 0.13 2.44 5.51 86.38 0.48 2.91 16 15 N -0.71 -16.25 5.56 -463.08 -2.57 -18.82 16 16 C 0.53 18.90 7.85 87.66 0.69 19.59 16 17 O -0.57 -25.68 15.86 -3.02 -0.05 -25.72 16 18 C -0.13 -5.07 6.16 71.24 0.44 -4.63 16 19 S -0.15 -8.40 20.57 -56.49 -1.16 -9.56 16 20 C -0.55 -31.12 9.50 67.96 0.65 -30.47 16 21 H 0.08 4.35 7.80 -2.91 -0.02 4.32 16 22 C 0.01 0.83 5.49 84.86 0.47 1.29 16 23 N -0.91 -55.82 13.22 21.65 0.29 -55.53 16 24 Si 1.00 43.32 29.55 68.60 2.03 45.35 16 25 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 26 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 27 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 28 C -0.15 -1.58 7.45 31.18 0.23 -1.35 16 29 H 0.09 0.57 8.12 -2.39 -0.02 0.55 16 30 H 0.11 0.14 8.14 -2.39 -0.02 0.13 16 31 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.42 4.00 7.44 -92.71 -0.69 3.31 16 33 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.42 1.30 8.71 -92.70 -0.81 0.49 16 36 H 0.09 0.53 8.14 -2.39 -0.02 0.52 16 37 H 0.10 0.60 8.07 -2.39 -0.02 0.58 16 38 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.06 1.23 7.85 -2.39 -0.02 1.21 16 40 H 0.42 6.72 8.47 -92.70 -0.79 5.93 16 41 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 42 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 43 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 44 H 0.09 1.03 7.90 -2.38 -0.02 1.01 16 45 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -87.55 400.57 -1.77 -89.32 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -1.24 Total: 15.22 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 5.98 Total: 2.68 kcal Atomic # 7 Polarization: -85.69 SS G_CDS: -7.23 Total: -92.92 kcal Atomic # 8 Polarization: -49.93 SS G_CDS: -0.15 Total: -50.08 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.56 kcal Total: -87.55 -1.77 -89.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001702492653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.426 kcal (2) G-P(sol) polarization free energy of solvation -87.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds