Wall clock time and date at job start Wed Apr 1 2020 01:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47006 * 2 1 4 4 C 1.50699 * 109.47389 * 120.00069 * 2 1 3 5 5 O 1.21276 * 120.00404 * 120.00175 * 4 2 1 6 6 N 1.34777 * 119.99618 * 299.99736 * 4 2 1 7 7 C 1.46500 * 119.99750 * 179.97438 * 6 4 2 8 8 C 1.52996 * 109.47364 * 180.02562 * 7 6 4 9 9 N 1.46500 * 109.47364 * 179.97438 * 8 7 6 10 10 C 1.34779 * 120.00169 * 179.97438 * 9 8 7 11 11 O 1.21282 * 119.99922 * 0.02562 * 10 9 8 12 12 C 1.50699 * 120.00037 * 180.02562 * 10 9 8 13 13 S 1.81000 * 109.46881 * 180.02562 * 12 10 9 14 14 C 1.76206 * 99.99929 * 180.02562 * 13 12 10 15 15 H 1.07998 * 119.99720 * 359.97438 * 14 13 12 16 16 C 1.38796 * 119.99847 * 180.02562 * 14 13 12 17 17 N 1.31625 * 120.00398 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99778 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47367 * 59.99618 * 18 16 14 20 20 H 1.48498 * 109.47311 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46831 * 299.99623 * 18 16 14 22 22 C 1.52996 * 109.46891 * 240.00230 * 2 1 3 23 23 H 1.09000 * 110.21901 * 300.47109 * 22 2 1 24 24 C 1.54477 * 110.24838 * 62.49610 * 22 2 1 25 25 C 1.54627 * 101.76780 * 144.41272 * 24 22 2 26 26 C 1.51277 * 104.19432 * 335.20522 * 25 24 22 27 27 O 1.21284 * 124.94176 * 196.22540 * 26 25 24 28 28 N 1.34421 * 110.11897 * 16.25206 * 26 25 24 29 29 H 1.09001 * 109.47248 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47097 * 299.99982 * 1 2 3 31 31 H 1.08998 * 109.47387 * 59.99492 * 1 2 3 32 32 H 0.97003 * 120.00717 * 0.02562 * 6 4 2 33 33 H 1.08992 * 109.47324 * 60.00066 * 7 6 4 34 34 H 1.09004 * 109.47042 * 300.00299 * 7 6 4 35 35 H 1.09004 * 109.47694 * 59.99746 * 8 7 6 36 36 H 1.09004 * 109.46785 * 299.99845 * 8 7 6 37 37 H 0.96996 * 119.99986 * 359.97438 * 9 8 7 38 38 H 1.09000 * 109.47247 * 60.00371 * 12 10 9 39 39 H 1.09001 * 109.47358 * 299.99798 * 12 10 9 40 40 H 0.96996 * 120.00393 * 180.02562 * 17 16 14 41 41 H 1.08998 * 110.97209 * 262.53629 * 24 22 2 42 42 H 1.09001 * 110.96851 * 26.29938 * 24 22 2 43 43 H 1.08997 * 110.49036 * 216.52254 * 25 24 22 44 44 H 1.09006 * 110.59326 * 93.93265 * 25 24 22 45 45 H 0.97002 * 124.35059 * 180.39735 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6964 1.1192 6 7 1.7069 -0.2499 2.4545 7 6 2.1948 -0.9408 3.6507 8 6 1.6845 -0.2199 4.8999 9 7 2.1719 -0.9111 6.0961 10 6 1.8463 -0.4507 7.3202 11 8 1.1494 0.5356 7.4315 12 6 2.3482 -1.1615 8.5507 13 16 1.7443 -0.3086 10.0285 14 6 2.4604 -1.3212 11.2802 15 1 3.0635 -2.1739 11.0054 16 6 2.2487 -1.0233 12.6192 17 7 1.5133 0.0157 12.9540 18 14 3.0085 -2.0963 13.9462 19 1 4.4868 -2.0852 13.8055 20 1 2.6340 -1.5699 15.2832 21 1 2.5082 -3.4874 13.8046 22 6 2.0400 -0.7212 -1.2493 23 1 1.6765 -1.7487 -1.2658 24 6 1.5871 0.0286 -2.5217 25 6 2.8018 -0.1748 -3.4566 26 6 3.9622 -0.4022 -2.5131 27 8 5.1329 -0.3265 -2.8209 28 7 3.5070 -0.7010 -1.2841 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.1489 0.5386 2.5436 33 1 3.2847 -0.9413 3.6508 34 1 1.8310 -1.9683 3.6505 35 1 0.5944 -0.2197 4.8997 36 1 2.0479 0.8078 4.9003 37 1 2.7289 -1.7002 6.0071 38 1 3.4382 -1.1619 8.5509 39 1 1.9844 -2.1890 8.5505 40 1 1.3657 0.2241 13.8898 41 1 0.6901 -0.4249 -2.9433 42 1 1.4271 1.0867 -2.3148 43 1 2.9709 0.7160 -4.0616 44 1 2.6528 -1.0457 -4.0949 45 1 4.0752 -0.8802 -0.5186 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001703108111.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:41 Heat of formation + Delta-G solvation = -122.118253 kcal Electronic energy + Delta-G solvation = -26167.660934 eV Core-core repulsion = 22117.752523 eV Total energy + Delta-G solvation = -4049.908411 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.28441 -39.94237 -39.24384 -37.21155 -36.06195 -34.35534 -33.52264 -32.46284 -31.74096 -30.34310 -28.19987 -27.26934 -25.53994 -24.99619 -23.03557 -21.95405 -20.89251 -20.78525 -20.32062 -18.11793 -17.90813 -17.54899 -16.88171 -16.60891 -16.29502 -16.03739 -15.75268 -15.52051 -15.05382 -14.83179 -14.54187 -14.36301 -14.10320 -14.01538 -13.90923 -13.59848 -13.37731 -13.24842 -12.92293 -12.69813 -12.60430 -12.48986 -12.17804 -12.08493 -11.83946 -11.73739 -11.58711 -11.08246 -11.06090 -10.80329 -10.34939 -10.22707 -9.86687 -9.63893 -9.55675 -9.50944 -9.11833 -9.05655 -8.29654 -6.54743 -6.24950 -3.96262 2.06951 2.22779 2.39249 2.95803 2.97085 3.05499 3.21624 3.26010 3.30239 3.63845 3.73421 3.84707 3.99408 4.16246 4.17455 4.33347 4.44295 4.50013 4.51442 4.65039 4.71196 4.97425 5.02680 5.04809 5.10385 5.10464 5.10861 5.20197 5.25510 5.41255 5.48564 5.51122 5.52815 5.65919 5.82626 5.84571 6.08051 6.41269 6.42781 6.69191 6.90214 7.53039 7.56496 7.63857 7.89769 8.31704 8.46815 9.20415 10.82418 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.032559 B = 0.001432 C = 0.001394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.759734 B =19545.266017 C =20074.248901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 H 0.107 0.893 4 C 0.518 3.482 5 O -0.536 6.536 6 N -0.723 5.723 7 C 0.108 3.892 8 C 0.111 3.889 9 N -0.737 5.737 10 C 0.535 3.465 11 O -0.516 6.516 12 C -0.154 4.154 13 S -0.060 6.060 14 C -0.537 4.537 15 H 0.073 0.927 16 C 0.075 3.925 17 N -0.868 5.868 18 Si 0.919 3.081 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.274 1.274 22 C 0.150 3.850 23 H 0.090 0.910 24 C -0.129 4.129 25 C -0.157 4.157 26 C 0.515 3.485 27 O -0.538 6.538 28 N -0.719 5.719 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.405 0.595 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.401 0.599 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.269 0.731 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.802 -0.396 -32.354 32.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.144 4.144 3 H 0.125 0.875 4 C 0.304 3.696 5 O -0.413 6.413 6 N -0.375 5.375 7 C -0.017 4.017 8 C -0.014 4.014 9 N -0.393 5.393 10 C 0.321 3.679 11 O -0.389 6.389 12 C -0.304 4.304 13 S 0.167 5.833 14 C -0.686 4.686 15 H 0.091 0.909 16 C -0.135 4.135 17 N -0.503 5.503 18 Si 0.745 3.255 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.199 1.199 22 C 0.044 3.956 23 H 0.108 0.892 24 C -0.167 4.167 25 C -0.197 4.197 26 C 0.301 3.699 27 O -0.415 6.415 28 N -0.375 5.375 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.240 0.760 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.235 0.765 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.079 0.921 41 H 0.113 0.887 42 H 0.105 0.895 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -3.992 0.716 -32.335 32.589 hybrid contribution 1.459 -1.923 1.237 2.712 sum -2.533 -1.207 -31.099 31.225 Atomic orbital electron populations 1.21790 0.91317 1.03572 1.03673 1.21765 0.98640 1.01438 0.92510 0.87460 1.20580 0.80057 0.84488 0.84479 1.90729 1.37773 1.26137 1.86673 1.45811 1.53942 1.32329 1.05431 1.21489 1.00136 0.96830 0.83204 1.21312 0.99938 0.96742 0.83404 1.45809 1.55679 1.32818 1.04987 1.20337 0.79610 0.84312 0.83656 1.90709 1.36465 1.25537 1.86237 1.23533 1.04559 1.03973 0.98376 1.85384 1.67541 1.38499 0.91880 1.22828 1.37448 1.15699 0.92585 0.90915 1.24985 0.94998 0.95566 0.97940 1.69998 1.36210 1.25755 1.18320 0.86220 0.79463 0.80069 0.79727 1.19914 1.20783 1.19924 1.21478 0.80566 1.00062 0.93469 0.89203 1.22737 0.98351 1.01823 0.93742 1.22365 0.93746 1.05204 0.98427 1.20915 0.89731 0.75382 0.83880 1.90771 1.18973 1.52352 1.79424 1.46411 1.07765 1.70903 1.12444 0.91423 0.91289 0.90547 0.76033 0.90543 0.90509 0.90928 0.90949 0.76462 0.89044 0.89048 0.92090 0.88702 0.89488 0.87925 0.87682 0.74319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.23 8.89 37.16 0.33 0.10 16 2 C -0.12 -0.43 2.38 -91.77 -0.22 -0.65 16 3 H 0.11 0.28 8.13 -51.93 -0.42 -0.14 16 4 C 0.52 3.50 6.93 -10.99 -0.08 3.42 16 5 O -0.54 -5.58 14.53 5.56 0.08 -5.50 16 6 N -0.72 -4.10 5.45 -60.30 -0.33 -4.43 16 7 C 0.11 0.78 5.79 -4.04 -0.02 0.76 16 8 C 0.11 1.03 5.79 -4.04 -0.02 1.00 16 9 N -0.74 -8.69 5.56 -60.29 -0.33 -9.02 16 10 C 0.53 9.33 7.85 -10.99 -0.09 9.24 16 11 O -0.52 -11.05 15.86 5.56 0.09 -10.96 16 12 C -0.15 -2.97 6.16 36.01 0.22 -2.75 16 13 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 14 C -0.54 -15.09 9.50 30.94 0.29 -14.79 16 15 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 16 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 17 N -0.87 -25.83 13.22 55.49 0.73 -25.10 16 18 Si 0.92 21.15 29.55 -169.99 -5.02 16.13 16 19 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 22 C 0.15 0.67 2.56 -67.01 -0.17 0.50 16 23 H 0.09 0.45 8.12 -51.93 -0.42 0.03 16 24 C -0.13 -0.26 5.62 -25.10 -0.14 -0.40 16 25 C -0.16 -0.68 6.86 -26.74 -0.18 -0.87 16 26 C 0.51 4.67 8.43 -10.86 -0.09 4.58 16 27 O -0.54 -7.49 18.03 5.55 0.10 -7.39 16 28 N -0.72 -5.51 5.55 -52.77 -0.29 -5.81 16 29 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.07 0.08 7.56 -51.93 -0.39 -0.31 16 31 H 0.08 0.01 7.32 -51.93 -0.38 -0.37 16 32 H 0.40 1.40 7.89 -40.82 -0.32 1.08 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.40 3.64 8.47 -40.82 -0.35 3.29 16 38 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 39 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 40 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.09 0.02 8.14 -51.93 -0.42 -0.41 16 42 H 0.09 0.09 7.88 -51.93 -0.41 -0.32 16 43 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.42 3.84 7.43 -40.82 -0.30 3.53 16 LS Contribution 392.24 15.07 5.91 5.91 Total: -1.00 -39.07 392.24 -8.31 -47.38 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -6.77 Total: 0.44 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -0.27 Total: 2.15 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: -0.22 Total: -44.36 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: 0.27 Total: -23.85 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -39.07 -8.31 -47.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703108111.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.736 kcal (2) G-P(sol) polarization free energy of solvation -39.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds