Wall clock time and date at job start Wed Apr 1 2020 01:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47000 * 2 1 4 4 C 1.50706 * 109.46859 * 240.00919 * 2 1 3 5 5 O 1.21283 * 119.99503 * 239.99651 * 4 2 1 6 6 N 1.34773 * 120.00081 * 59.72378 * 4 2 1 7 7 C 1.46506 * 119.99968 * 180.02562 * 6 4 2 8 8 C 1.52992 * 109.47161 * 179.97438 * 7 6 4 9 9 N 1.46496 * 109.47167 * 179.97438 * 8 7 6 10 10 C 1.34777 * 120.00344 * 180.02562 * 9 8 7 11 11 O 1.21281 * 119.99845 * 359.97438 * 10 9 8 12 12 C 1.50696 * 120.00458 * 179.97438 * 10 9 8 13 13 S 1.80992 * 109.47507 * 179.97438 * 12 10 9 14 14 C 1.76196 * 100.00260 * 180.02562 * 13 12 10 15 15 H 1.08005 * 120.00165 * 0.02562 * 14 13 12 16 16 C 1.38800 * 120.00197 * 180.02562 * 14 13 12 17 17 N 1.31628 * 119.99870 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00268 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46889 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47244 * 119.99700 * 18 16 14 21 21 H 1.48497 * 109.47213 * 239.99829 * 18 16 14 22 22 C 1.52998 * 109.47291 * 120.00701 * 2 1 3 23 23 H 1.09003 * 110.21808 * 61.93030 * 22 2 1 24 24 C 1.54479 * 110.24462 * 299.99506 * 22 2 1 25 25 C 1.54628 * 101.76642 * 215.58245 * 24 22 2 26 26 C 1.51291 * 104.19377 * 24.80319 * 25 24 22 27 27 O 1.21278 * 124.94110 * 163.71063 * 26 25 24 28 28 N 1.34417 * 110.11333 * 343.74263 * 26 25 24 29 29 H 1.09002 * 109.46917 * 299.99220 * 1 2 3 30 30 H 1.08995 * 109.47505 * 59.99513 * 1 2 3 31 31 H 1.09001 * 109.47000 * 179.97438 * 1 2 3 32 32 H 0.96998 * 120.00525 * 359.97438 * 6 4 2 33 33 H 1.09004 * 109.46587 * 299.99661 * 7 6 4 34 34 H 1.08998 * 109.47213 * 59.99069 * 7 6 4 35 35 H 1.09004 * 109.47116 * 299.99365 * 8 7 6 36 36 H 1.08993 * 109.47352 * 59.99609 * 8 7 6 37 37 H 0.97004 * 120.00009 * 359.97438 * 9 8 7 38 38 H 1.08999 * 109.47405 * 300.00193 * 12 10 9 39 39 H 1.09006 * 109.46765 * 59.99515 * 12 10 9 40 40 H 0.97004 * 119.99966 * 180.02562 * 17 16 14 41 41 H 1.08994 * 110.97289 * 333.70903 * 24 22 2 42 42 H 1.09005 * 110.96283 * 97.43288 * 24 22 2 43 43 H 1.09005 * 110.48367 * 143.47590 * 25 24 22 44 44 H 1.08994 * 110.49157 * 266.12597 * 25 24 22 45 45 H 0.97004 * 124.34911 * 179.58857 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 8 2.7296 -1.6963 -1.1194 6 7 1.7021 -0.2529 -2.4546 7 6 2.1899 -0.9437 -3.6510 8 6 1.6738 -0.2266 -4.9000 9 7 2.1621 -0.9170 -6.0963 10 6 1.8320 -0.4596 -7.3203 11 8 1.1303 0.5233 -7.4315 12 6 2.3348 -1.1694 -8.5509 13 16 1.7242 -0.3213 -10.0286 14 6 2.4414 -1.3328 -11.2804 15 1 3.0484 -2.1828 -11.0058 16 6 2.2262 -1.0372 -12.6194 17 7 1.4860 -0.0015 -12.9540 18 14 2.9871 -2.1092 -13.9465 19 1 3.7692 -3.2010 -13.3129 20 1 1.9119 -2.6936 -14.7877 21 1 3.8857 -1.2848 -14.7939 22 6 2.0400 -0.7214 1.2491 23 1 1.7118 -1.7608 1.2443 24 6 1.5351 -0.0072 2.5225 25 6 2.7371 -0.1816 3.4794 26 6 3.9238 -0.3535 2.5569 27 8 5.0845 -0.2400 2.8897 28 7 3.5045 -0.6497 1.3146 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.1408 0.5332 -2.5436 33 1 3.2799 -0.9397 -3.6536 34 1 1.8303 -1.9726 -3.6484 35 1 0.5838 -0.2309 -4.8972 36 1 2.0331 0.8024 -4.9027 37 1 2.7237 -1.7030 -6.0074 38 1 3.4248 -1.1648 -8.5532 39 1 1.9759 -2.1987 -8.5487 40 1 1.3353 0.2048 -13.8898 41 1 1.3414 1.0475 2.3274 42 1 0.6461 -0.4983 2.9185 43 1 2.8621 0.7056 4.1004 44 1 2.6051 -1.0676 4.1003 45 1 4.0940 -0.7970 0.5585 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001703108113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:44 Heat of formation + Delta-G solvation = -122.430214 kcal Electronic energy + Delta-G solvation = -26156.196293 eV Core-core repulsion = 22106.274354 eV Total energy + Delta-G solvation = -4049.921939 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.27975 -39.95009 -39.24493 -37.22163 -36.06038 -34.35008 -33.52285 -32.46586 -31.75435 -30.34302 -28.20030 -27.25803 -25.54578 -25.01533 -23.03735 -21.94954 -20.89571 -20.77361 -20.31506 -18.13538 -17.92127 -17.55758 -16.87346 -16.60817 -16.29571 -16.03381 -15.75631 -15.52198 -15.05405 -14.83646 -14.53625 -14.38179 -14.10035 -14.02606 -13.91400 -13.59983 -13.38618 -13.24901 -12.91621 -12.67559 -12.60800 -12.49016 -12.18110 -12.09622 -11.84000 -11.73739 -11.57957 -11.09649 -11.05943 -10.79391 -10.34482 -10.24023 -9.85017 -9.63752 -9.55799 -9.51747 -9.12978 -9.06359 -8.28933 -6.54934 -6.25661 -3.96628 2.07397 2.22009 2.39449 2.94485 2.97066 3.05504 3.19328 3.26630 3.31615 3.63827 3.73320 3.84327 3.99455 4.16016 4.16959 4.33562 4.44451 4.49848 4.51196 4.65110 4.71278 4.97276 5.02726 5.04802 5.09963 5.10459 5.10602 5.20108 5.25165 5.41758 5.48570 5.51093 5.52849 5.65979 5.82540 5.84894 6.08007 6.40841 6.41745 6.67623 6.90456 7.53051 7.56800 7.64279 7.88450 8.31771 8.46804 9.20108 10.81841 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.032962 B = 0.001427 C = 0.001391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.265034 B =19611.202068 C =20124.538502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 H 0.107 0.893 4 C 0.517 3.483 5 O -0.536 6.536 6 N -0.723 5.723 7 C 0.108 3.892 8 C 0.111 3.889 9 N -0.737 5.737 10 C 0.535 3.465 11 O -0.516 6.516 12 C -0.154 4.154 13 S -0.060 6.060 14 C -0.536 4.536 15 H 0.074 0.926 16 C 0.074 3.926 17 N -0.867 5.867 18 Si 0.919 3.081 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.150 3.850 23 H 0.091 0.909 24 C -0.129 4.129 25 C -0.157 4.157 26 C 0.515 3.485 27 O -0.538 6.538 28 N -0.719 5.719 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.405 0.595 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.401 0.599 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.268 0.732 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.103 0.897 44 H 0.105 0.895 45 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.722 -0.491 32.321 32.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.144 4.144 3 H 0.125 0.875 4 C 0.303 3.697 5 O -0.413 6.413 6 N -0.375 5.375 7 C -0.017 4.017 8 C -0.014 4.014 9 N -0.393 5.393 10 C 0.321 3.679 11 O -0.389 6.389 12 C -0.304 4.304 13 S 0.166 5.834 14 C -0.684 4.684 15 H 0.092 0.908 16 C -0.136 4.136 17 N -0.503 5.503 18 Si 0.746 3.254 19 H -0.196 1.196 20 H -0.205 1.205 21 H -0.205 1.205 22 C 0.044 3.956 23 H 0.109 0.891 24 C -0.167 4.167 25 C -0.197 4.197 26 C 0.301 3.699 27 O -0.415 6.415 28 N -0.375 5.375 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.240 0.760 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.235 0.765 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.078 0.922 41 H 0.105 0.895 42 H 0.113 0.887 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -3.924 0.625 32.324 32.568 hybrid contribution 1.474 -1.890 -1.251 2.704 sum -2.450 -1.266 31.074 31.196 Atomic orbital electron populations 1.21793 0.91315 1.03580 1.03676 1.21758 0.98638 1.01446 0.92514 0.87464 1.20580 0.80084 0.84512 0.84484 1.90740 1.37780 1.26057 1.86690 1.45809 1.53700 1.32595 1.05430 1.21489 1.00107 0.96852 0.83203 1.21308 0.99913 0.96768 0.83404 1.45809 1.55345 1.33151 1.04987 1.20335 0.79666 0.84258 0.83658 1.90709 1.36306 1.25694 1.86238 1.23531 1.04567 1.03964 0.98366 1.85388 1.67203 1.38859 0.91919 1.22910 1.37072 1.15873 0.92562 0.90812 1.24994 0.95021 0.95571 0.97970 1.70024 1.36154 1.25965 1.18133 0.86107 0.78881 0.79820 0.80634 1.19599 1.20541 1.20545 1.21480 0.80407 1.00223 0.93460 0.89144 1.22743 0.98260 1.02101 0.93574 1.22369 0.93523 1.05346 0.98490 1.20912 0.89929 0.75247 0.83770 1.90770 1.20192 1.51752 1.78776 1.46378 1.07976 1.71254 1.11906 0.90535 0.91290 0.91416 0.76041 0.90556 0.90509 0.90921 0.90958 0.76461 0.89045 0.89045 0.92202 0.89483 0.88696 0.87904 0.87676 0.74448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.23 8.86 37.16 0.33 0.10 16 2 C -0.12 -0.43 2.39 -91.77 -0.22 -0.65 16 3 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 4 C 0.52 3.49 6.95 -10.98 -0.08 3.41 16 5 O -0.54 -5.59 14.71 5.56 0.08 -5.51 16 6 N -0.72 -4.10 5.45 -60.29 -0.33 -4.43 16 7 C 0.11 0.78 5.79 -4.04 -0.02 0.76 16 8 C 0.11 1.03 5.79 -4.05 -0.02 1.00 16 9 N -0.74 -8.68 5.56 -60.30 -0.34 -9.01 16 10 C 0.53 9.32 7.85 -10.99 -0.09 9.24 16 11 O -0.52 -11.04 15.86 5.56 0.09 -10.96 16 12 C -0.15 -2.97 6.16 36.00 0.22 -2.74 16 13 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 14 C -0.54 -15.04 9.50 30.94 0.29 -14.75 16 15 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 16 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 17 N -0.87 -25.82 13.22 55.49 0.73 -25.09 16 18 Si 0.92 21.17 29.55 -169.99 -5.02 16.14 16 19 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 22 C 0.15 0.67 2.55 -67.01 -0.17 0.50 16 23 H 0.09 0.46 8.07 -51.93 -0.42 0.04 16 24 C -0.13 -0.26 5.54 -25.10 -0.14 -0.40 16 25 C -0.16 -0.68 6.86 -26.74 -0.18 -0.86 16 26 C 0.52 4.63 8.43 -10.86 -0.09 4.54 16 27 O -0.54 -7.43 18.03 5.56 0.10 -7.33 16 28 N -0.72 -5.43 5.57 -52.76 -0.29 -5.73 16 29 H 0.08 0.01 7.16 -51.93 -0.37 -0.36 16 30 H 0.07 0.08 7.55 -51.93 -0.39 -0.31 16 31 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.40 1.40 7.87 -40.82 -0.32 1.08 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.40 3.63 8.47 -40.82 -0.35 3.29 16 38 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 39 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 40 H 0.27 7.39 8.31 -40.82 -0.34 7.06 16 41 H 0.09 0.09 7.78 -51.93 -0.40 -0.32 16 42 H 0.09 0.02 8.14 -51.93 -0.42 -0.40 16 43 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.11 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.42 3.74 7.66 -40.82 -0.31 3.43 16 LS Contribution 392.23 15.07 5.91 5.91 Total: -1.00 -39.12 392.23 -8.30 -47.42 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -6.76 Total: 0.27 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -0.27 Total: 2.13 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: -0.22 Total: -44.27 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: 0.27 Total: -23.80 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -39.12 -8.30 -47.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703108113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.006 kcal (2) G-P(sol) polarization free energy of solvation -39.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds