Wall clock time and date at job start Wed Apr 1 2020 02:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21283 * 120.00046 * 2 1 4 4 N 1.34773 * 119.99988 * 179.97438 * 2 1 3 5 5 C 1.46502 * 120.00003 * 179.97438 * 4 2 1 6 6 C 1.50698 * 109.47106 * 180.02562 * 5 4 2 7 7 O 1.21276 * 120.00372 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99825 * 180.02562 * 6 5 4 9 9 C 1.46510 * 119.99913 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.46971 * 179.97438 * 9 8 6 11 11 H 1.09005 * 109.47475 * 294.99786 * 10 9 8 12 12 N 1.46495 * 109.47430 * 55.00029 * 10 9 8 13 13 C 1.34776 * 120.00573 * 204.99724 * 12 10 9 14 14 O 1.21285 * 119.99717 * 0.02562 * 13 12 10 15 15 C 1.50694 * 120.00347 * 179.97438 * 13 12 10 16 16 S 1.81004 * 109.47261 * 180.02562 * 15 13 12 17 17 C 1.76193 * 100.00254 * 180.02562 * 16 15 13 18 18 H 1.08005 * 119.99714 * 0.02562 * 17 16 15 19 19 C 1.38793 * 120.00468 * 180.02562 * 17 16 15 20 20 N 1.31635 * 119.99830 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00495 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47082 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47072 * 119.99870 * 21 19 17 24 24 H 1.48495 * 109.47150 * 239.99806 * 21 19 17 25 25 C 1.53003 * 109.46999 * 175.00231 * 10 9 8 26 26 C 1.53001 * 117.51964 * 111.28362 * 25 10 9 27 27 C 1.52999 * 60.00190 * 107.47982 * 26 25 10 28 28 H 1.09002 * 109.47132 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47450 * 300.00464 * 1 2 3 30 30 H 1.09003 * 109.46988 * 60.00260 * 1 2 3 31 31 H 0.96999 * 120.00252 * 0.02562 * 4 2 1 32 32 H 1.09008 * 109.46475 * 60.00495 * 5 4 2 33 33 H 1.08996 * 109.47866 * 300.00768 * 5 4 2 34 34 H 0.96992 * 120.00193 * 359.97438 * 8 6 5 35 35 H 1.08998 * 109.46981 * 59.99955 * 9 8 6 36 36 H 1.08998 * 109.46837 * 299.99947 * 9 8 6 37 37 H 0.97002 * 119.99615 * 24.99601 * 12 10 9 38 38 H 1.08995 * 109.47252 * 300.00380 * 15 13 12 39 39 H 1.09005 * 109.47084 * 60.00526 * 15 13 12 40 40 H 0.97000 * 120.00216 * 180.02562 * 20 19 17 41 41 H 1.09002 * 115.54973 * 325.58146 * 25 10 9 42 42 H 1.09001 * 117.49733 * 214.97413 * 26 25 10 43 43 H 1.08995 * 117.49577 * 359.97438 * 26 25 10 44 44 H 1.09004 * 117.50150 * 252.51496 * 27 26 25 45 45 H 1.09004 * 117.49681 * 107.48417 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1482 -2.5880 0.0001 7 8 3.3601 -3.5098 0.0001 8 7 5.4732 -2.8342 0.0001 9 6 5.9616 -4.2155 -0.0003 10 6 7.4916 -4.2155 -0.0008 11 1 7.8547 -3.7810 -0.9322 12 7 7.9803 -3.4235 1.1306 13 6 9.2022 -2.8572 1.0791 14 8 9.8971 -3.0030 0.0958 15 6 9.7047 -2.0421 2.2427 16 16 11.3636 -1.4202 1.8722 17 6 11.6957 -0.5310 3.3566 18 1 10.9583 -0.5019 4.1451 19 6 12.9050 0.1321 3.5126 20 7 13.8041 0.0963 2.5518 21 14 13.2574 1.0743 5.0866 22 1 12.0950 0.9588 6.0034 23 1 14.4631 0.5080 5.7431 24 1 13.4946 2.5045 4.7649 25 6 8.0017 -5.6525 0.1244 26 6 8.7013 -6.2628 -1.0917 27 6 9.5167 -5.8655 0.1404 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6959 -2.0072 0.0005 32 1 4.0095 -0.6528 0.8896 33 1 4.0090 -0.6539 -0.8904 34 1 6.1035 -2.0970 -0.0003 35 1 5.5984 -4.7290 -0.8905 36 1 5.5982 -4.7296 0.8895 37 1 7.4244 -3.3066 1.9169 38 1 9.0322 -1.2019 2.4151 39 1 9.7415 -2.6670 3.1351 40 1 14.6494 0.5594 2.6609 41 1 7.3937 -6.3152 0.7404 42 1 8.5536 -7.3269 -1.2758 43 1 8.7980 -5.6407 -1.9814 44 1 10.1500 -4.9819 0.0614 45 1 9.9054 -6.6684 0.7670 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001703825027.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:03 Heat of formation + Delta-G solvation = -89.155305 kcal Electronic energy + Delta-G solvation = -26853.135020 eV Core-core repulsion = 22804.655990 eV Total energy + Delta-G solvation = -4048.479030 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.68055 -39.94112 -39.28302 -37.32399 -35.60462 -34.78323 -33.64688 -32.46943 -31.13164 -30.29608 -28.64435 -27.07821 -25.52189 -23.55693 -22.28973 -21.42366 -21.00207 -20.69187 -20.32993 -18.32169 -17.79743 -17.10038 -16.79952 -16.53028 -16.33168 -16.15297 -15.64088 -15.59352 -15.25488 -14.84300 -14.75096 -14.25009 -14.13841 -13.80415 -13.58466 -13.47230 -13.23187 -12.99033 -12.93014 -12.58407 -12.36213 -12.23114 -12.12643 -11.77366 -11.30411 -11.09817 -11.05972 -10.80235 -10.54826 -10.42144 -10.36350 -10.21401 -9.84658 -9.68550 -9.55503 -9.44307 -9.11785 -8.99665 -8.29616 -6.55172 -6.26211 -3.97001 2.07877 2.25503 2.34910 2.85026 2.92405 3.06910 3.19034 3.24665 3.28962 3.54407 3.89805 4.16223 4.16812 4.27188 4.46664 4.70895 4.77761 4.83231 4.88194 4.97228 4.97832 5.01762 5.05998 5.09504 5.10497 5.19902 5.31578 5.39924 5.52584 5.64075 5.68844 5.80078 5.86271 5.88967 5.97422 6.06561 6.09164 6.38700 6.51520 6.94567 7.07416 7.54415 7.56506 7.64200 7.80330 8.31113 8.47424 9.19762 10.81170 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.008363 B = 0.002557 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3347.400771 B =10948.144085 C =13871.160822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.512 3.488 3 O -0.546 6.546 4 N -0.719 5.719 5 C 0.096 3.904 6 C 0.512 3.488 7 O -0.540 6.540 8 N -0.722 5.722 9 C 0.118 3.882 10 C 0.166 3.834 11 H 0.097 0.903 12 N -0.735 5.735 13 C 0.536 3.464 14 O -0.511 6.511 15 C -0.155 4.155 16 S -0.058 6.058 17 C -0.536 4.536 18 H 0.073 0.927 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.174 4.174 26 C -0.171 4.171 27 C -0.174 4.174 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.412 0.588 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.409 0.591 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.399 0.601 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.268 0.732 41 H 0.104 0.896 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.125 0.875 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.646 -9.053 -5.216 25.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.299 3.701 3 O -0.423 6.423 4 N -0.376 5.376 5 C -0.032 4.032 6 C 0.298 3.702 7 O -0.418 6.418 8 N -0.375 5.375 9 C -0.006 4.006 10 C 0.061 3.939 11 H 0.115 0.885 12 N -0.389 5.389 13 C 0.323 3.677 14 O -0.386 6.386 15 C -0.306 4.306 16 S 0.169 5.831 17 C -0.684 4.684 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.205 1.205 25 C -0.194 4.194 26 C -0.209 4.209 27 C -0.211 4.211 28 H 0.096 0.904 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.250 0.750 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.245 0.755 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.233 0.767 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.122 0.878 42 H 0.110 0.890 43 H 0.113 0.887 44 H 0.143 0.857 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -22.431 -9.151 -6.924 25.196 hybrid contribution -0.652 0.613 2.609 2.758 sum -23.083 -8.538 -4.315 24.987 Atomic orbital electron populations 1.21829 0.91063 1.04453 1.05512 1.20866 0.90819 0.83021 0.75404 1.90765 1.70693 1.31360 1.49514 1.45862 1.05858 1.10002 1.75875 1.21082 0.82627 0.94097 1.05373 1.20492 0.82656 0.91119 0.75951 1.90703 1.55174 1.45972 1.49923 1.45898 1.06898 1.09683 1.74995 1.21670 0.92600 0.82649 1.03704 1.20682 0.91284 0.90259 0.91707 0.88500 1.46141 1.18651 1.53998 1.20111 1.20315 0.80328 0.78476 0.88560 1.90648 1.55349 1.59328 1.33229 1.23545 1.06495 1.01678 0.98846 1.85375 1.07692 1.64673 1.25378 1.22895 1.05164 1.37163 1.03153 0.90898 1.24991 0.95072 0.96014 0.97501 1.70021 1.07103 1.41081 1.32043 0.86120 0.78390 0.79278 0.81738 1.19617 1.20564 1.20534 1.22530 0.96989 0.96222 1.03635 1.22927 1.04505 1.00759 0.92670 1.23334 0.92925 1.04803 1.00057 0.90387 0.88498 0.88527 0.74990 0.87972 0.88065 0.75507 0.89585 0.90484 0.76724 0.89250 0.89201 0.92204 0.87763 0.89026 0.88654 0.85737 0.89322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.79 10.39 36.00 0.37 -0.42 16 2 C 0.51 4.50 7.94 -10.99 -0.09 4.42 16 3 O -0.55 -7.25 17.10 5.55 0.09 -7.16 16 4 N -0.72 -5.53 5.53 -61.47 -0.34 -5.87 16 5 C 0.10 0.74 6.15 -5.19 -0.03 0.70 16 6 C 0.51 4.33 7.90 -10.99 -0.09 4.25 16 7 O -0.54 -5.99 15.67 5.56 0.09 -5.91 16 8 N -0.72 -5.34 5.39 -60.29 -0.32 -5.67 16 9 C 0.12 0.91 5.22 -4.04 -0.02 0.88 16 10 C 0.17 1.58 2.43 -67.93 -0.17 1.41 16 11 H 0.10 1.09 7.34 -51.93 -0.38 0.71 16 12 N -0.73 -7.90 4.50 -53.81 -0.24 -8.14 16 13 C 0.54 8.55 7.18 -10.99 -0.08 8.47 16 14 O -0.51 -9.94 12.89 5.55 0.07 -9.86 16 15 C -0.16 -2.85 6.16 36.00 0.22 -2.63 16 16 S -0.06 -1.49 20.57 -107.50 -2.21 -3.70 16 17 C -0.54 -14.80 9.50 30.94 0.29 -14.51 16 18 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 19 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 20 N -0.87 -25.63 13.22 55.49 0.73 -24.90 16 21 Si 0.92 21.07 29.55 -169.99 -5.02 16.05 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 C -0.17 -1.71 5.36 -90.61 -0.49 -2.20 16 26 C -0.17 -1.72 10.18 -26.73 -0.27 -2.00 16 27 C -0.17 -2.18 9.73 -26.73 -0.26 -2.44 16 28 H 0.08 0.21 7.91 -51.93 -0.41 -0.21 16 29 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.41 2.75 7.27 -40.82 -0.30 2.46 16 32 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 33 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.41 2.80 8.14 -40.82 -0.33 2.46 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.40 3.43 8.60 -40.82 -0.35 3.08 16 38 H 0.09 1.51 8.14 -51.92 -0.42 1.08 16 39 H 0.09 1.56 8.14 -51.91 -0.42 1.13 16 40 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.10 0.89 8.11 -51.93 -0.42 0.47 16 42 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.10 0.99 8.05 -51.93 -0.42 0.57 16 44 H 0.12 2.01 5.02 -51.93 -0.26 1.75 16 45 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 397.35 15.07 5.99 5.99 Total: -1.00 -36.21 397.35 -8.51 -44.72 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -6.64 Total: 6.54 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -0.69 Total: -2.09 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: -0.17 Total: -44.58 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: 0.25 Total: -22.93 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.70 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.21 -8.51 -44.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703825027.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.439 kcal (2) G-P(sol) polarization free energy of solvation -36.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds