Wall clock time and date at job start Wed Apr 1 2020 02:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21280 * 119.99901 * 2 1 4 4 N 1.34774 * 120.00338 * 180.02562 * 2 1 3 5 5 C 1.46497 * 120.00288 * 179.97438 * 4 2 1 6 6 C 1.50694 * 109.47115 * 180.02562 * 5 4 2 7 7 O 1.21283 * 120.00363 * 359.97438 * 6 5 4 8 8 N 1.34784 * 119.99988 * 180.02562 * 6 5 4 9 9 C 1.46493 * 119.99864 * 179.72721 * 8 6 5 10 10 C 1.53001 * 109.47084 * 180.02562 * 9 8 6 11 11 H 1.09000 * 109.47367 * 64.99307 * 10 9 8 12 12 N 1.46505 * 109.46951 * 304.99803 * 10 9 8 13 13 C 1.34773 * 120.00181 * 155.00373 * 12 10 9 14 14 O 1.21277 * 120.00007 * 359.97438 * 13 12 10 15 15 C 1.50704 * 119.99883 * 180.02562 * 13 12 10 16 16 S 1.81004 * 109.46687 * 179.97438 * 15 13 12 17 17 C 1.76204 * 99.99612 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99849 * 359.97438 * 17 16 15 19 19 C 1.38795 * 120.00056 * 180.02562 * 17 16 15 20 20 N 1.31639 * 119.99982 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00319 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47188 * 59.99909 * 21 19 17 23 23 H 1.48502 * 109.47713 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47291 * 299.99857 * 21 19 17 25 25 C 1.52996 * 109.47372 * 184.99895 * 10 9 8 26 26 C 1.52999 * 117.49977 * 248.74287 * 25 10 9 27 27 C 1.53001 * 117.50112 * 180.08275 * 25 10 9 28 28 H 1.09002 * 109.46875 * 240.00046 * 1 2 3 29 29 H 1.08998 * 109.47382 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47392 * 119.99765 * 1 2 3 31 31 H 0.97001 * 119.99493 * 0.02562 * 4 2 1 32 32 H 1.08998 * 109.46734 * 60.00204 * 5 4 2 33 33 H 1.09002 * 109.47081 * 299.99975 * 5 4 2 34 34 H 0.97000 * 119.99339 * 0.02562 * 8 6 5 35 35 H 1.09007 * 109.47196 * 299.99538 * 9 8 6 36 36 H 1.09006 * 109.47678 * 59.99732 * 9 8 6 37 37 H 0.97003 * 119.99576 * 334.99627 * 12 10 9 38 38 H 1.08998 * 109.47164 * 299.99667 * 15 13 12 39 39 H 1.09001 * 109.47137 * 59.99413 * 15 13 12 40 40 H 0.96995 * 119.99901 * 180.02562 * 20 19 17 41 41 H 1.09003 * 115.55008 * 34.41656 * 25 10 9 42 42 H 1.09001 * 117.50021 * 0.02562 * 26 25 10 43 43 H 1.09005 * 117.49919 * 145.01421 * 26 25 10 44 44 H 1.08998 * 117.50341 * 214.97622 * 27 25 10 45 45 H 1.08994 * 117.49904 * 359.97438 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6459 -1.1671 -0.0011 6 6 4.1482 -2.5879 -0.0022 7 8 3.3601 -3.5098 -0.0021 8 7 5.4734 -2.8342 -0.0024 9 6 5.9617 -4.2153 0.0025 10 6 7.4917 -4.2153 0.0019 11 1 7.8554 -3.7775 0.9314 12 7 7.9795 -3.4273 -1.1327 13 6 9.2015 -2.8609 -1.0841 14 8 9.8971 -3.0032 -0.1009 15 6 9.7030 -2.0498 -2.2511 16 16 11.3623 -1.4267 -1.8839 17 6 11.6926 -0.5414 -3.3712 18 1 10.9542 -0.5146 -4.1589 19 6 12.9020 0.1206 -3.5307 20 7 13.8021 0.0875 -2.5707 21 14 13.2525 1.0585 -5.1076 22 1 12.2339 2.1243 -5.2865 23 1 14.6022 1.6728 -5.0287 24 1 13.1998 0.1248 -6.2611 25 6 8.0017 -5.6527 -0.1187 26 6 8.7016 -6.2585 1.0995 27 6 9.5167 -5.8658 -0.1352 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3634 1.0276 0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 1.6959 -2.0072 -0.0013 32 1 4.0095 -0.6535 0.8889 33 1 4.0089 -0.6531 -0.8911 34 1 6.1036 -2.0968 -0.0014 35 1 5.5991 -4.7257 0.8949 36 1 5.5976 -4.7327 -0.8851 37 1 7.4230 -3.3133 -1.9190 38 1 9.7391 -2.6778 -3.1413 39 1 9.0303 -1.2102 -2.4259 40 1 14.6472 0.5504 -2.6821 41 1 7.3933 -6.3176 -0.7319 42 1 8.7983 -5.6332 1.9871 43 1 8.5538 -7.3220 1.2877 44 1 9.9050 -6.6711 -0.7588 45 1 10.1501 -4.9819 -0.0606 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001703825028.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:05 Heat of formation + Delta-G solvation = -89.513733 kcal Electronic energy + Delta-G solvation = -26852.283075 eV Core-core repulsion = 22803.788502 eV Total energy + Delta-G solvation = -4048.494573 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.67861 -39.94010 -39.28269 -37.32269 -35.60239 -34.78012 -33.64614 -32.46604 -31.12205 -30.29344 -28.64505 -27.08170 -25.51658 -23.55663 -22.29357 -21.42311 -20.98922 -20.69171 -20.32921 -18.32643 -17.79742 -17.08894 -16.80010 -16.54179 -16.33584 -16.14634 -15.63565 -15.59230 -15.25349 -14.83990 -14.74728 -14.24592 -14.13079 -13.79749 -13.58163 -13.47452 -13.23186 -12.96044 -12.92960 -12.58421 -12.39397 -12.23085 -12.12617 -11.77351 -11.30505 -11.08280 -11.06357 -10.81190 -10.54812 -10.42164 -10.36056 -10.21391 -9.86343 -9.68387 -9.55271 -9.44222 -9.10058 -8.99542 -8.30386 -6.55013 -6.25612 -3.96684 2.07817 2.25578 2.34751 2.85093 2.92427 3.06747 3.21165 3.24455 3.27145 3.54291 3.89726 4.16761 4.16928 4.27144 4.45508 4.70923 4.82772 4.85176 4.87571 4.97554 4.97601 4.98586 5.05858 5.09813 5.10497 5.19871 5.31499 5.42623 5.52661 5.64088 5.68879 5.80140 5.86610 5.89002 5.97473 6.06617 6.09122 6.38715 6.51535 6.94508 7.07310 7.54341 7.56269 7.64171 7.80540 8.30993 8.47477 9.19978 10.81654 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.008365 B = 0.002556 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3346.444213 B =10951.275985 C =13872.223887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.512 3.488 3 O -0.545 6.545 4 N -0.721 5.721 5 C 0.096 3.904 6 C 0.512 3.488 7 O -0.540 6.540 8 N -0.722 5.722 9 C 0.118 3.882 10 C 0.166 3.834 11 H 0.097 0.903 12 N -0.735 5.735 13 C 0.536 3.464 14 O -0.511 6.511 15 C -0.155 4.155 16 S -0.057 6.057 17 C -0.537 4.537 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C -0.174 4.174 26 C -0.171 4.171 27 C -0.174 4.174 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.412 0.588 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.409 0.591 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.399 0.601 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.269 0.731 41 H 0.104 0.896 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.622 -9.089 5.279 25.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.299 3.701 3 O -0.422 6.422 4 N -0.377 5.377 5 C -0.031 4.031 6 C 0.298 3.702 7 O -0.418 6.418 8 N -0.375 5.375 9 C -0.006 4.006 10 C 0.061 3.939 11 H 0.115 0.885 12 N -0.389 5.389 13 C 0.323 3.677 14 O -0.386 6.386 15 C -0.306 4.306 16 S 0.170 5.830 17 C -0.685 4.685 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.744 3.256 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.194 4.194 26 C -0.209 4.209 27 C -0.211 4.211 28 H 0.108 0.892 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.250 0.750 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.245 0.755 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.233 0.767 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.079 0.921 41 H 0.122 0.878 42 H 0.113 0.887 43 H 0.110 0.890 44 H 0.107 0.893 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -22.396 -9.175 6.989 25.191 hybrid contribution -0.672 0.593 -2.623 2.772 sum -23.068 -8.581 4.366 24.997 Atomic orbital electron populations 1.21898 0.91036 1.05728 1.04512 1.20866 0.90833 0.83000 0.75426 1.90764 1.70821 1.31363 1.49232 1.45774 1.05836 1.10022 1.76102 1.21072 0.82583 0.94088 1.05361 1.20497 0.82655 0.91122 0.75950 1.90705 1.55174 1.45970 1.49919 1.45898 1.06899 1.09680 1.74997 1.21669 0.92601 0.82652 1.03702 1.20684 0.91294 0.90317 0.91640 0.88502 1.46143 1.18637 1.54168 1.19954 1.20314 0.80331 0.78434 0.88599 1.90645 1.55306 1.59281 1.33321 1.23548 1.06511 1.01713 0.98803 1.85370 1.07666 1.64807 1.25204 1.22816 1.05134 1.37502 1.03069 0.90998 1.24986 0.95047 0.95980 0.97511 1.70001 1.07100 1.41018 1.32138 0.86231 0.77660 0.79676 0.81988 1.19912 1.20796 1.19943 1.22529 0.96983 0.96223 1.03627 1.22939 1.04515 1.00794 0.92624 1.23341 0.92931 1.04805 1.00041 0.89213 0.88722 0.89189 0.75000 0.88066 0.87995 0.75505 0.89600 0.90475 0.76722 0.89207 0.89252 0.92092 0.87765 0.88652 0.89026 0.89322 0.85738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 10.32 36.00 0.37 -0.44 16 2 C 0.51 4.50 7.94 -10.99 -0.09 4.42 16 3 O -0.54 -7.24 17.09 5.56 0.09 -7.15 16 4 N -0.72 -5.52 5.53 -61.48 -0.34 -5.86 16 5 C 0.10 0.74 6.15 -5.20 -0.03 0.71 16 6 C 0.51 4.33 7.90 -10.98 -0.09 4.24 16 7 O -0.54 -5.98 15.67 5.56 0.09 -5.90 16 8 N -0.72 -5.33 5.39 -60.29 -0.32 -5.66 16 9 C 0.12 0.90 5.21 -4.04 -0.02 0.88 16 10 C 0.17 1.58 2.43 -67.93 -0.17 1.41 16 11 H 0.10 1.09 7.34 -51.93 -0.38 0.71 16 12 N -0.73 -7.90 4.50 -53.80 -0.24 -8.15 16 13 C 0.54 8.55 7.18 -10.98 -0.08 8.47 16 14 O -0.51 -9.94 12.89 5.56 0.07 -9.86 16 15 C -0.16 -2.85 6.16 36.01 0.22 -2.63 16 16 S -0.06 -1.47 20.57 -107.50 -2.21 -3.68 16 17 C -0.54 -14.85 9.50 30.94 0.29 -14.55 16 18 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 19 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 20 N -0.87 -25.64 13.22 55.49 0.73 -24.91 16 21 Si 0.92 21.07 29.55 -169.99 -5.02 16.04 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 C -0.17 -1.71 5.36 -90.62 -0.49 -2.19 16 26 C -0.17 -1.73 10.18 -26.69 -0.27 -2.00 16 27 C -0.17 -2.18 9.74 -26.69 -0.26 -2.44 16 28 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 0.47 8.12 -51.93 -0.42 0.04 16 30 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.41 2.74 7.44 -40.82 -0.30 2.44 16 32 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.41 2.79 8.14 -40.82 -0.33 2.46 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.40 3.43 8.60 -40.82 -0.35 3.08 16 38 H 0.09 1.56 8.14 -51.92 -0.42 1.13 16 39 H 0.09 1.51 8.14 -51.92 -0.42 1.08 16 40 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 41 H 0.10 0.89 8.11 -51.93 -0.42 0.47 16 42 H 0.10 0.99 8.05 -51.93 -0.42 0.57 16 43 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.12 2.01 5.02 -51.93 -0.26 1.75 16 LS Contribution 397.64 15.07 5.99 5.99 Total: -1.00 -36.16 397.64 -8.52 -44.69 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -6.66 Total: 6.58 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -0.70 Total: -2.14 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: -0.17 Total: -44.57 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: 0.25 Total: -22.91 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -1.47 SS G_CDS: -2.21 Total: -3.68 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.16 -8.52 -44.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703825028.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.829 kcal (2) G-P(sol) polarization free energy of solvation -36.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds