Wall clock time and date at job start Wed Apr 1 2020 02:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21280 * 119.99901 * 2 1 4 4 N 1.34774 * 120.00338 * 180.02562 * 2 1 3 5 5 C 1.46497 * 120.00288 * 179.97438 * 4 2 1 6 6 C 1.50694 * 109.47115 * 180.02562 * 5 4 2 7 7 O 1.21283 * 120.00363 * 359.97438 * 6 5 4 8 8 N 1.34784 * 119.99988 * 180.02562 * 6 5 4 9 9 C 1.46493 * 119.99864 * 179.72721 * 8 6 5 10 10 C 1.53001 * 109.47084 * 180.02562 * 9 8 6 11 11 H 1.09000 * 109.47367 * 64.99307 * 10 9 8 12 12 N 1.46505 * 109.46951 * 304.99803 * 10 9 8 13 13 C 1.34773 * 120.00181 * 155.00373 * 12 10 9 14 14 O 1.21277 * 120.00007 * 359.97438 * 13 12 10 15 15 C 1.50704 * 119.99883 * 180.02562 * 13 12 10 16 16 S 1.81004 * 109.46687 * 179.97438 * 15 13 12 17 17 C 1.76204 * 99.99612 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99849 * 359.97438 * 17 16 15 19 19 C 1.38795 * 120.00056 * 180.02562 * 17 16 15 20 20 N 1.31639 * 119.99982 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00319 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47188 * 59.99909 * 21 19 17 23 23 H 1.48502 * 109.47713 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47291 * 299.99857 * 21 19 17 25 25 C 1.52996 * 109.47372 * 184.99895 * 10 9 8 26 26 C 1.52999 * 117.49977 * 248.74287 * 25 10 9 27 27 C 1.53001 * 117.50112 * 180.08275 * 25 10 9 28 28 H 1.09002 * 109.46875 * 240.00046 * 1 2 3 29 29 H 1.08998 * 109.47382 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47392 * 119.99765 * 1 2 3 31 31 H 0.97001 * 119.99493 * 0.02562 * 4 2 1 32 32 H 1.08998 * 109.46734 * 60.00204 * 5 4 2 33 33 H 1.09002 * 109.47081 * 299.99975 * 5 4 2 34 34 H 0.97000 * 119.99339 * 0.02562 * 8 6 5 35 35 H 1.09007 * 109.47196 * 299.99538 * 9 8 6 36 36 H 1.09006 * 109.47678 * 59.99732 * 9 8 6 37 37 H 0.97003 * 119.99576 * 334.99627 * 12 10 9 38 38 H 1.08998 * 109.47164 * 299.99667 * 15 13 12 39 39 H 1.09001 * 109.47137 * 59.99413 * 15 13 12 40 40 H 0.96995 * 119.99901 * 180.02562 * 20 19 17 41 41 H 1.09003 * 115.55008 * 34.41656 * 25 10 9 42 42 H 1.09001 * 117.50021 * 0.02562 * 26 25 10 43 43 H 1.09005 * 117.49919 * 145.01421 * 26 25 10 44 44 H 1.08998 * 117.50341 * 214.97622 * 27 25 10 45 45 H 1.08994 * 117.49904 * 359.97438 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6459 -1.1671 -0.0011 6 6 4.1482 -2.5879 -0.0022 7 8 3.3601 -3.5098 -0.0021 8 7 5.4734 -2.8342 -0.0024 9 6 5.9617 -4.2153 0.0025 10 6 7.4917 -4.2153 0.0019 11 1 7.8554 -3.7775 0.9314 12 7 7.9795 -3.4273 -1.1327 13 6 9.2015 -2.8609 -1.0841 14 8 9.8971 -3.0032 -0.1009 15 6 9.7030 -2.0498 -2.2511 16 16 11.3623 -1.4267 -1.8839 17 6 11.6926 -0.5414 -3.3712 18 1 10.9542 -0.5146 -4.1589 19 6 12.9020 0.1206 -3.5307 20 7 13.8021 0.0875 -2.5707 21 14 13.2525 1.0585 -5.1076 22 1 12.2339 2.1243 -5.2865 23 1 14.6022 1.6728 -5.0287 24 1 13.1998 0.1248 -6.2611 25 6 8.0017 -5.6527 -0.1187 26 6 8.7016 -6.2585 1.0995 27 6 9.5167 -5.8658 -0.1352 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3634 1.0276 0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 1.6959 -2.0072 -0.0013 32 1 4.0095 -0.6535 0.8889 33 1 4.0089 -0.6531 -0.8911 34 1 6.1036 -2.0968 -0.0014 35 1 5.5991 -4.7257 0.8949 36 1 5.5976 -4.7327 -0.8851 37 1 7.4230 -3.3133 -1.9190 38 1 9.7391 -2.6778 -3.1413 39 1 9.0303 -1.2102 -2.4259 40 1 14.6472 0.5504 -2.6821 41 1 7.3933 -6.3176 -0.7319 42 1 8.7983 -5.6332 1.9871 43 1 8.5538 -7.3220 1.2877 44 1 9.9050 -6.6711 -0.7588 45 1 10.1501 -4.9819 -0.0606 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001703825028.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:04 Heat of formation + Delta-G solvation = -118.236081 kcal Electronic energy + Delta-G solvation = -26853.528570 eV Core-core repulsion = 22803.788502 eV Total energy + Delta-G solvation = -4049.740067 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.46414 -40.91934 -40.09168 -38.35947 -36.39514 -35.50688 -34.66666 -34.56297 -31.89774 -31.19095 -29.69800 -27.84549 -27.57121 -24.32368 -23.19664 -22.31890 -21.70609 -21.64233 -21.21331 -19.84793 -18.87342 -17.95971 -17.83480 -17.32078 -17.16515 -17.05921 -16.87028 -16.62589 -16.39344 -16.09929 -15.96569 -15.48210 -15.10834 -14.75603 -14.59341 -14.51577 -14.22514 -14.09258 -13.58432 -13.45407 -13.32652 -13.16560 -13.02777 -12.93377 -12.87712 -12.72481 -12.57694 -12.26181 -11.74134 -11.35914 -11.28127 -11.12401 -11.12162 -11.04024 -10.81246 -10.34778 -10.25465 -10.17959 -10.06810 -8.63426 -8.34247 -6.10697 1.27426 1.39930 1.43094 1.46646 1.55698 1.59988 1.61787 1.72640 2.18730 2.28754 2.45675 2.97010 2.99998 3.34079 3.48565 3.52297 3.88173 3.94394 3.96749 4.10109 4.19393 4.23370 4.27046 4.33778 4.35202 4.42880 4.54667 4.55930 4.64811 4.67997 4.82869 4.85057 5.06414 5.07238 5.21928 5.26775 5.27889 5.36267 5.42376 5.50009 6.19969 6.29118 6.47243 6.50359 6.97577 7.07701 7.17541 7.27690 8.74297 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.008365 B = 0.002556 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3346.444213 B =10951.275985 C =13872.223887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.507 3.493 3 O -0.597 6.597 4 N -0.714 5.714 5 C 0.095 3.905 6 C 0.520 3.480 7 O -0.564 6.564 8 N -0.716 5.716 9 C 0.128 3.872 10 C 0.171 3.829 11 H 0.081 0.919 12 N -0.708 5.708 13 C 0.542 3.458 14 O -0.549 6.549 15 C -0.133 4.133 16 S -0.144 6.144 17 C -0.547 4.547 18 H 0.081 0.919 19 C 0.014 3.986 20 N -0.910 5.910 21 Si 0.994 3.006 22 H -0.263 1.263 23 H -0.280 1.280 24 H -0.263 1.263 25 C -0.158 4.158 26 C -0.159 4.159 27 C -0.202 4.202 28 H 0.111 0.889 29 H 0.091 0.909 30 H 0.111 0.889 31 H 0.419 0.581 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.413 0.587 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.414 0.586 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.270 0.730 41 H 0.129 0.871 42 H 0.088 0.912 43 H 0.113 0.887 44 H 0.092 0.908 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.381 -10.030 3.999 28.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.296 3.704 3 O -0.478 6.478 4 N -0.370 5.370 5 C -0.033 4.033 6 C 0.306 3.694 7 O -0.443 6.443 8 N -0.368 5.368 9 C 0.004 3.996 10 C 0.066 3.934 11 H 0.099 0.901 12 N -0.362 5.362 13 C 0.328 3.672 14 O -0.427 6.427 15 C -0.284 4.284 16 S 0.083 5.917 17 C -0.695 4.695 18 H 0.099 0.901 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.816 3.184 22 H -0.188 1.188 23 H -0.205 1.205 24 H -0.188 1.188 25 C -0.178 4.178 26 C -0.197 4.197 27 C -0.240 4.240 28 H 0.129 0.871 29 H 0.109 0.891 30 H 0.129 0.871 31 H 0.258 0.742 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.249 0.751 35 H 0.111 0.889 36 H 0.107 0.893 37 H 0.251 0.749 38 H 0.123 0.877 39 H 0.127 0.873 40 H 0.079 0.921 41 H 0.147 0.853 42 H 0.107 0.893 43 H 0.132 0.868 44 H 0.111 0.889 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -25.204 -10.158 5.695 27.765 hybrid contribution 0.107 0.786 -2.165 2.306 sum -25.097 -9.372 3.530 27.022 Atomic orbital electron populations 1.21927 0.87777 1.06223 1.06533 1.21614 0.92425 0.82283 0.74091 1.90740 1.72124 1.33087 1.51876 1.45794 1.05877 1.10147 1.75197 1.21099 0.82843 0.93670 1.05654 1.20489 0.82575 0.90960 0.75340 1.90699 1.55755 1.46628 1.51229 1.45849 1.06730 1.09817 1.74443 1.21593 0.90545 0.82838 1.04627 1.20726 0.92598 0.89902 0.90181 0.90114 1.45814 1.16777 1.52725 1.20918 1.19881 0.81515 0.78519 0.87289 1.90658 1.56798 1.60723 1.34488 1.23392 1.01809 1.02804 1.00380 1.85512 1.14153 1.65712 1.26276 1.23175 1.05583 1.37361 1.03352 0.90089 1.26074 0.94804 0.96979 1.01217 1.70167 1.07663 1.42289 1.34567 0.85064 0.77620 0.78341 0.77371 1.18752 1.20509 1.18754 1.22619 0.95185 0.96471 1.03504 1.22997 1.02884 1.01982 0.91803 1.23170 0.94278 1.03829 1.02676 0.87052 0.89052 0.87069 0.74199 0.87869 0.87685 0.75063 0.88898 0.89290 0.74864 0.87738 0.87252 0.92058 0.85328 0.89307 0.86847 0.88947 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 10.32 71.24 0.74 -0.48 16 2 C 0.51 8.40 7.94 87.66 0.70 9.09 16 3 O -0.60 -15.88 17.09 -3.03 -0.05 -15.93 16 4 N -0.71 -9.90 5.53 -466.81 -2.58 -12.48 16 5 C 0.09 1.33 6.15 85.63 0.53 1.86 16 6 C 0.52 7.72 7.90 87.65 0.69 8.41 16 7 O -0.56 -11.18 15.67 -3.04 -0.05 -11.23 16 8 N -0.72 -8.95 5.39 -463.05 -2.49 -11.44 16 9 C 0.13 1.59 5.21 86.38 0.45 2.04 16 10 C 0.17 2.92 2.43 44.99 0.11 3.03 16 11 H 0.08 1.74 7.34 -2.39 -0.02 1.72 16 12 N -0.71 -13.96 4.50 -442.53 -1.99 -15.95 16 13 C 0.54 17.08 7.18 87.66 0.63 17.71 16 14 O -0.55 -22.01 12.89 -3.02 -0.04 -22.05 16 15 C -0.13 -4.80 6.16 71.24 0.44 -4.36 16 16 S -0.14 -7.62 20.57 -56.49 -1.16 -8.78 16 17 C -0.55 -30.48 9.50 67.95 0.65 -29.83 16 18 H 0.08 4.19 7.80 -2.91 -0.02 4.17 16 19 C 0.01 0.79 5.49 84.86 0.47 1.26 16 20 N -0.91 -55.19 13.22 21.65 0.29 -54.91 16 21 Si 0.99 43.13 29.55 68.60 2.03 45.16 16 22 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 23 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 24 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 25 C -0.16 -2.77 5.36 -10.79 -0.06 -2.83 16 26 C -0.16 -2.98 10.18 30.62 0.31 -2.67 16 27 C -0.20 -5.01 9.74 30.62 0.30 -4.71 16 28 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.09 0.77 8.12 -2.39 -0.02 0.75 16 30 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.42 4.76 7.44 -92.71 -0.69 4.07 16 32 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.41 4.82 8.14 -92.71 -0.75 4.07 16 35 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.41 5.88 8.60 -92.71 -0.80 5.08 16 38 H 0.10 3.48 8.14 -2.40 -0.02 3.46 16 39 H 0.11 3.52 8.14 -2.40 -0.02 3.50 16 40 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 41 H 0.13 1.70 8.11 -2.39 -0.02 1.68 16 42 H 0.09 1.78 8.05 -2.39 -0.02 1.77 16 43 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 44 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.09 2.91 5.02 -2.39 -0.01 2.89 16 Total: -1.00 -82.14 397.64 -1.31 -83.44 By element: Atomic # 1 Polarization: 26.83 SS G_CDS: -1.20 Total: 25.63 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 5.94 Total: -1.47 kcal Atomic # 7 Polarization: -88.00 SS G_CDS: -6.78 Total: -94.78 kcal Atomic # 8 Polarization: -49.07 SS G_CDS: -0.14 Total: -49.21 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 16 Polarization: -7.62 SS G_CDS: -1.16 Total: -8.78 kcal Total: -82.14 -1.31 -83.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703825028.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.792 kcal (2) G-P(sol) polarization free energy of solvation -82.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds