Wall clock time and date at job start Wed Apr 1 2020 02:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21283 * 119.99803 * 2 1 4 4 N 1.34777 * 119.99675 * 180.27875 * 2 1 3 5 5 C 1.46497 * 119.99525 * 179.72583 * 4 2 1 6 6 C 1.50706 * 109.47174 * 179.97438 * 5 4 2 7 7 O 1.21285 * 119.99349 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00107 * 179.97438 * 6 5 4 9 9 C 1.47019 * 125.64985 * 0.03281 * 8 6 5 10 10 C 1.54324 * 107.26852 * 181.01999 * 9 8 6 11 11 C 1.55157 * 102.94560 * 22.19154 * 10 9 8 12 12 H 1.08996 * 111.00151 * 82.57043 * 11 10 9 13 13 C 1.53005 * 111.00299 * 206.38774 * 11 10 9 14 14 N 1.46499 * 109.46694 * 293.54425 * 13 11 10 15 15 C 1.34783 * 119.99543 * 180.02562 * 14 13 11 16 16 O 1.21275 * 120.00248 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99666 * 179.97438 * 15 14 13 18 18 S 1.81007 * 109.46765 * 180.02562 * 17 15 14 19 19 C 1.76204 * 99.99846 * 180.02562 * 18 17 15 20 20 H 1.08010 * 119.99920 * 359.97438 * 19 18 17 21 21 C 1.38798 * 120.00145 * 179.97438 * 19 18 17 22 22 N 1.31628 * 119.99941 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99713 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47080 * 90.00033 * 23 21 19 25 25 H 1.48500 * 109.46914 * 209.99847 * 23 21 19 26 26 H 1.48495 * 109.47357 * 330.00141 * 23 21 19 27 27 C 1.47427 * 125.64705 * 179.71955 * 8 6 5 28 28 H 1.09003 * 109.47157 * 89.99448 * 1 2 3 29 29 H 1.08998 * 109.47436 * 209.99505 * 1 2 3 30 30 H 1.09000 * 109.47527 * 330.00230 * 1 2 3 31 31 H 0.97000 * 119.99894 * 359.71837 * 4 2 1 32 32 H 1.08995 * 109.47421 * 299.99467 * 5 4 2 33 33 H 1.09001 * 109.47621 * 60.00103 * 5 4 2 34 34 H 1.09000 * 109.88060 * 300.43062 * 9 8 6 35 35 H 1.09001 * 109.88378 * 61.44524 * 9 8 6 36 36 H 1.09001 * 110.72183 * 140.55698 * 10 9 8 37 37 H 1.08999 * 110.71847 * 263.64601 * 10 9 8 38 38 H 1.08999 * 109.47082 * 53.54509 * 13 11 10 39 39 H 1.09001 * 109.46650 * 173.54881 * 13 11 10 40 40 H 0.96995 * 120.00508 * 0.02562 * 14 13 11 41 41 H 1.08999 * 109.47418 * 299.99794 * 17 15 14 42 42 H 1.08998 * 109.47356 * 60.00190 * 17 15 14 43 43 H 0.96998 * 119.99741 * 179.97438 * 22 21 19 44 44 H 1.09006 * 110.36674 * 274.75347 * 27 8 6 45 45 H 1.09001 * 110.36568 * 37.07207 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0057 5 6 3.6458 -1.1672 -0.0117 6 6 4.1482 -2.5880 -0.0167 7 8 3.3600 -3.5098 -0.0158 8 7 5.4732 -2.8342 -0.0232 9 6 6.5339 -1.8162 -0.0255 10 6 7.8846 -2.5620 -0.0595 11 6 7.5023 -3.9468 -0.6456 12 1 7.4490 -3.9094 -1.7336 13 6 8.4826 -5.0271 -0.1842 14 7 9.8036 -4.7664 -0.7616 15 6 10.8323 -5.5944 -0.4916 16 8 10.6643 -6.5554 0.2289 17 6 12.1910 -5.3266 -1.0859 18 16 13.3505 -6.6053 -0.5412 19 6 14.8131 -6.0606 -1.3590 20 1 14.7897 -5.1718 -1.9723 21 6 15.9952 -6.7735 -1.2150 22 7 17.0877 -6.3668 -1.8263 23 14 16.0357 -8.3102 -0.1536 24 1 15.7126 -9.4961 -0.9870 25 1 17.3906 -8.4714 0.4324 26 1 15.0362 -8.1848 0.9374 27 6 6.0991 -4.1691 -0.0227 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5137 30 1 -0.3634 0.8900 0.5138 31 1 1.6958 -2.0072 -0.0056 32 1 4.0054 -0.6512 -0.9019 33 1 4.0129 -0.6556 0.8780 34 1 6.4379 -1.1828 -0.9073 35 1 6.4661 -1.2082 0.8767 36 1 8.5919 -2.0493 -0.7115 37 1 8.2936 -2.6651 0.9455 38 1 8.5524 -5.0139 0.9035 39 1 8.1284 -6.0039 -0.5138 40 1 9.9379 -3.9981 -1.3380 41 1 12.1209 -5.3397 -2.1736 42 1 12.5456 -4.3499 -0.7565 43 1 17.9139 -6.8649 -1.7254 44 1 6.1890 -4.5455 0.9963 45 1 5.5185 -4.8604 -0.6335 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704063913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:00 Heat of formation + Delta-G solvation = -142.785976 kcal Electronic energy + Delta-G solvation = -26102.283552 eV Core-core repulsion = 22051.478921 eV Total energy + Delta-G solvation = -4050.804631 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.53525 -40.73648 -40.29652 -38.82274 -35.96884 -35.56851 -34.66007 -33.23432 -31.47067 -31.04429 -30.23045 -28.40092 -27.83380 -26.00886 -24.12387 -21.84231 -21.71674 -21.53993 -20.55675 -19.86137 -18.63639 -18.01527 -17.80417 -17.53422 -17.23680 -17.12252 -17.02234 -16.62723 -16.33277 -15.95050 -15.60748 -15.43328 -14.94854 -14.90387 -14.63343 -14.46616 -14.35192 -14.14387 -13.84498 -13.66019 -13.46245 -13.33107 -13.32488 -13.03710 -12.96580 -12.94535 -12.67816 -12.28352 -11.96325 -11.85427 -11.70386 -11.23116 -11.16073 -11.11592 -10.99024 -10.51234 -10.31510 -10.12136 -9.80800 -8.97800 -8.50545 -6.20923 1.00920 1.32293 1.34287 1.47284 1.53255 1.56699 1.59733 1.61945 2.22934 2.26900 2.35831 2.73450 2.88155 3.19946 3.46838 3.61893 3.76351 3.90852 3.95336 4.17590 4.24022 4.26111 4.27755 4.30047 4.31884 4.50907 4.52006 4.52324 4.66088 4.71365 4.72354 4.86708 4.94976 5.00398 5.07132 5.14718 5.22898 5.29740 5.42127 5.71798 6.12721 6.28809 6.43268 6.49656 6.85405 6.95178 7.13042 7.22753 8.61762 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.044109 B = 0.001454 C = 0.001420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.638790 B =19257.576815 C =19715.441025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.510 3.490 3 O -0.594 6.594 4 N -0.718 5.718 5 C 0.106 3.894 6 C 0.525 3.475 7 O -0.573 6.573 8 N -0.612 5.612 9 C 0.092 3.908 10 C -0.126 4.126 11 C -0.098 4.098 12 H 0.108 0.892 13 C 0.134 3.866 14 N -0.707 5.707 15 C 0.535 3.465 16 O -0.565 6.565 17 C -0.111 4.111 18 S -0.180 6.180 19 C -0.528 4.528 20 H 0.063 0.937 21 C 0.047 3.953 22 N -0.917 5.917 23 Si 0.913 3.087 24 H -0.263 1.263 25 H -0.260 1.260 26 H -0.237 1.237 27 C 0.113 3.887 28 H 0.111 0.889 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.417 0.583 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.418 0.582 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.276 0.724 44 H 0.074 0.926 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.298 13.868 2.524 35.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.299 3.701 3 O -0.475 6.475 4 N -0.374 5.374 5 C -0.021 4.021 6 C 0.314 3.686 7 O -0.453 6.453 8 N -0.345 5.345 9 C -0.030 4.030 10 C -0.164 4.164 11 C -0.117 4.117 12 H 0.126 0.874 13 C 0.010 3.990 14 N -0.362 5.362 15 C 0.321 3.679 16 O -0.443 6.443 17 C -0.262 4.262 18 S 0.047 5.953 19 C -0.676 4.676 20 H 0.082 0.918 21 C -0.159 4.159 22 N -0.555 5.555 23 Si 0.735 3.265 24 H -0.188 1.188 25 H -0.185 1.185 26 H -0.160 1.160 27 C -0.010 4.010 28 H 0.129 0.871 29 H 0.122 0.878 30 H 0.115 0.885 31 H 0.256 0.744 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.127 0.873 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.256 0.744 41 H 0.132 0.868 42 H 0.135 0.865 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -32.472 12.547 3.677 35.006 hybrid contribution 0.859 0.333 -0.904 1.290 sum -31.614 12.879 2.773 34.249 Atomic orbital electron populations 1.21910 0.87957 1.06277 1.06377 1.21549 0.92315 0.82208 0.74012 1.90720 1.71991 1.32853 1.51981 1.45924 1.06079 1.10229 1.75155 1.21053 0.82603 0.92850 1.05642 1.20374 0.81169 0.91320 0.75770 1.90706 1.55194 1.47174 1.52275 1.48426 1.04904 1.09250 1.71918 1.22398 0.85752 0.90834 1.04017 1.22801 0.96308 0.94001 1.03270 1.22488 0.92390 0.94844 1.02022 0.87412 1.21216 0.80966 0.98428 0.98421 1.45608 1.08716 1.29871 1.51970 1.19928 0.85714 0.82200 0.80086 1.90703 1.84444 1.30525 1.38618 1.23277 0.94220 1.03515 1.05206 1.84756 1.05209 1.38602 1.66753 1.22472 0.95512 1.15272 1.34324 0.91836 1.25537 0.94116 1.00210 0.95988 1.70014 1.01125 1.41219 1.43179 0.85886 0.79669 0.79963 0.80974 1.18810 1.18453 1.16043 1.22210 0.92538 0.84701 1.01583 0.87063 0.87835 0.88464 0.74390 0.87415 0.87599 0.88941 0.89466 0.87332 0.89989 0.91608 0.91973 0.74418 0.86796 0.86545 0.91417 0.90775 0.90687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.85 10.30 71.24 0.73 -0.12 16 2 C 0.51 6.93 7.94 87.66 0.70 7.62 16 3 O -0.59 -13.27 17.10 -3.04 -0.05 -13.32 16 4 N -0.72 -8.48 5.53 -466.79 -2.58 -11.06 16 5 C 0.11 1.18 5.35 85.64 0.46 1.64 16 6 C 0.52 7.57 7.92 87.66 0.69 8.27 16 7 O -0.57 -12.17 15.92 -3.04 -0.05 -12.22 16 8 N -0.61 -6.76 3.32 -811.35 -2.70 -9.45 16 9 C 0.09 0.48 6.48 86.73 0.56 1.05 16 10 C -0.13 -0.68 6.12 31.78 0.19 -0.49 16 11 C -0.10 -0.85 3.12 -9.32 -0.03 -0.88 16 12 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 13 C 0.13 2.08 5.12 86.38 0.44 2.52 16 14 N -0.71 -13.09 5.41 -463.05 -2.50 -15.59 16 15 C 0.54 16.51 7.85 87.66 0.69 17.20 16 16 O -0.56 -22.66 15.86 -3.01 -0.05 -22.71 16 17 C -0.11 -3.86 6.16 71.24 0.44 -3.42 16 18 S -0.18 -8.79 18.55 -56.49 -1.05 -9.84 16 19 C -0.53 -30.04 10.04 67.95 0.68 -29.36 16 20 H 0.06 3.79 8.03 -2.91 -0.02 3.77 16 21 C 0.05 2.71 5.50 84.86 0.47 3.17 16 22 N -0.92 -55.11 13.97 21.65 0.30 -54.81 16 23 Si 0.91 44.35 27.74 68.60 1.90 46.25 16 24 H -0.26 -12.52 7.11 99.48 0.71 -11.81 16 25 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 26 H -0.24 -11.45 6.74 99.48 0.67 -10.78 16 27 C 0.11 1.34 6.38 86.93 0.55 1.89 16 28 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 30 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.42 4.35 7.44 -92.71 -0.69 3.66 16 32 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 35 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 37 H 0.08 0.57 8.02 -2.39 -0.02 0.55 16 38 H 0.07 1.16 8.11 -2.39 -0.02 1.14 16 39 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.42 4.79 8.34 -92.71 -0.77 4.02 16 41 H 0.11 3.59 8.14 -2.40 -0.02 3.57 16 42 H 0.12 3.62 8.14 -2.40 -0.02 3.60 16 43 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 44 H 0.07 0.94 8.04 -2.38 -0.02 0.92 16 45 H 0.07 1.07 8.03 -2.39 -0.02 1.05 16 Total: -1.00 -84.37 394.65 -0.67 -85.04 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -0.48 Total: 8.61 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 6.58 Total: 9.10 kcal Atomic # 7 Polarization: -83.43 SS G_CDS: -7.48 Total: -90.91 kcal Atomic # 8 Polarization: -48.10 SS G_CDS: -0.15 Total: -48.25 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.90 Total: 46.25 kcal Atomic # 16 Polarization: -8.79 SS G_CDS: -1.05 Total: -9.84 kcal Total: -84.37 -0.67 -85.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704063913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.743 kcal (2) G-P(sol) polarization free energy of solvation -84.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds