Wall clock time and date at job start Wed Apr 1 2020 02:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21280 * 119.99689 * 2 1 4 4 N 1.34779 * 119.99860 * 179.97438 * 2 1 3 5 5 C 1.47058 * 136.05768 * 359.62921 * 4 2 1 6 6 C 1.53237 * 88.08329 * 207.20289 * 5 4 2 7 7 C 1.50704 * 114.32805 * 220.47222 * 6 5 4 8 8 O 1.21277 * 120.00203 * 93.75858 * 7 6 5 9 9 N 1.34777 * 119.99974 * 273.75529 * 7 6 5 10 10 C 1.46493 * 120.00095 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.46810 * 35.00455 * 10 9 7 12 12 C 1.52999 * 109.47469 * 275.00507 * 10 9 7 13 13 C 1.52997 * 109.47299 * 155.00351 * 10 9 7 14 14 N 1.46498 * 109.47251 * 305.00497 * 13 10 9 15 15 C 1.34773 * 120.00283 * 180.02562 * 14 13 10 16 16 O 1.21284 * 120.00275 * 359.97438 * 15 14 13 17 17 C 1.50708 * 120.00285 * 179.97438 * 15 14 13 18 18 S 1.80999 * 109.47239 * 179.97438 * 17 15 14 19 19 C 1.76201 * 99.99598 * 179.97438 * 18 17 15 20 20 H 1.07990 * 120.00683 * 0.02562 * 19 18 17 21 21 C 1.38801 * 119.99580 * 180.02562 * 19 18 17 22 22 N 1.31628 * 119.99877 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00193 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47097 * 90.00032 * 23 21 19 25 25 H 1.48501 * 109.47452 * 210.00342 * 23 21 19 26 26 H 1.48502 * 109.47234 * 330.00256 * 23 21 19 27 27 C 1.47065 * 136.05111 * 180.02562 * 4 2 1 28 28 H 1.09002 * 109.47152 * 89.99920 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.00021 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.00002 * 1 2 3 31 31 H 1.08999 * 113.47002 * 321.93558 * 5 4 2 32 32 H 1.09003 * 113.46941 * 92.37774 * 5 4 2 33 33 H 1.09002 * 114.19752 * 87.72906 * 6 5 4 34 34 H 0.96999 * 119.99986 * 0.02562 * 9 7 6 35 35 H 1.08995 * 109.47057 * 299.99954 * 12 10 9 36 36 H 1.08998 * 109.47201 * 60.00043 * 12 10 9 37 37 H 1.09001 * 109.47381 * 179.97438 * 12 10 9 38 38 H 1.09004 * 109.47100 * 64.99931 * 13 10 9 39 39 H 1.08997 * 109.47479 * 185.00506 * 13 10 9 40 40 H 0.97010 * 120.00168 * 359.97438 * 14 13 10 41 41 H 1.09002 * 109.46823 * 300.00194 * 17 15 14 42 42 H 1.09007 * 109.46815 * 59.99491 * 17 15 14 43 43 H 0.97003 * 119.99906 * 179.97438 * 22 21 19 44 44 H 1.09003 * 113.46815 * 267.62024 * 27 4 2 45 45 H 1.08999 * 113.47174 * 38.06396 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.8265 -2.5945 0.0078 6 6 3.1648 -2.8704 0.7014 7 6 3.8767 -4.1040 0.2088 8 8 4.7082 -4.0143 -0.6693 9 7 3.5892 -5.3070 0.7443 10 6 4.2808 -6.5062 0.2652 11 1 5.3092 -6.2537 0.0068 12 6 3.5627 -7.0490 -0.9721 13 6 4.2776 -7.5703 1.3645 14 7 4.8581 -7.0106 2.5876 15 6 4.9596 -7.7720 3.6950 16 8 4.5699 -8.9204 3.6792 17 6 5.5573 -7.1964 4.9531 18 16 5.5534 -8.4552 6.2536 19 6 6.2848 -7.5385 7.5687 20 1 6.5790 -6.5112 7.4126 21 6 6.4827 -8.1368 8.8054 22 7 7.0286 -7.4519 9.7880 23 14 5.9732 -9.9135 9.0757 24 1 7.1074 -10.8106 8.7380 25 1 5.5941 -10.1089 10.4982 26 1 4.8130 -10.2336 8.2059 27 6 3.5942 -1.5739 0.0012 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3633 -0.8900 0.5139 31 1 0.9614 -2.8238 0.6299 32 1 1.7566 -3.0295 -0.9893 33 1 3.1275 -2.7996 1.7885 34 1 2.9238 -5.3788 1.4465 35 1 2.5344 -7.3014 -0.7138 36 1 3.5650 -6.2909 -1.7553 37 1 4.0776 -7.9410 -1.3289 38 1 3.2532 -7.8871 1.5605 39 1 4.8678 -8.4279 1.0417 40 1 5.1702 -6.0922 2.6002 41 1 6.5816 -6.8794 4.7566 42 1 4.9672 -6.3387 5.2762 43 1 7.1666 -7.8699 10.6524 44 1 4.0003 -1.7341 -0.9977 45 1 4.2288 -0.9373 0.6177 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001705099557.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:52 Heat of formation + Delta-G solvation = -74.587905 kcal Electronic energy + Delta-G solvation = -26693.870124 eV Core-core repulsion = 22646.022783 eV Total energy + Delta-G solvation = -4047.847340 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.46739 -39.97213 -39.25695 -38.04446 -36.57541 -33.89331 -32.48068 -32.08226 -31.32874 -29.64322 -29.08035 -26.57404 -26.18096 -25.59727 -24.46994 -21.64477 -20.79590 -20.55494 -19.53217 -18.33192 -17.86379 -17.48778 -16.92178 -16.50674 -16.34014 -16.21398 -15.62771 -15.40765 -15.20390 -15.00532 -14.56927 -14.23148 -13.91099 -13.66691 -13.54976 -13.30139 -13.24660 -13.09702 -13.03576 -13.00427 -12.84148 -12.74080 -12.44931 -12.40822 -12.01885 -11.45767 -11.40658 -11.30895 -11.04804 -10.66250 -10.57115 -10.19592 -9.90952 -9.71070 -9.59601 -9.29739 -9.16025 -9.03784 -8.56098 -6.97374 -6.32862 -4.05366 2.01325 2.12831 2.17005 2.62911 2.72700 2.86134 3.23236 3.30115 3.46162 3.56714 3.58809 3.89859 4.13228 4.25469 4.28924 4.39296 4.49207 4.64015 4.64559 4.70761 4.73325 4.82455 4.87353 4.89423 5.06088 5.09527 5.15623 5.16422 5.19142 5.25326 5.36977 5.46609 5.48348 5.57751 5.68395 5.75791 5.93609 5.97103 6.35019 6.94104 7.14822 7.44790 7.64236 7.67810 7.90046 8.35633 8.37764 9.13040 10.76306 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.012624 B = 0.002047 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.485520 B =13672.577512 C =15227.705714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.542 3.458 3 O -0.542 6.542 4 N -0.651 5.651 5 C 0.120 3.880 6 C -0.157 4.157 7 C 0.531 3.469 8 O -0.530 6.530 9 N -0.722 5.722 10 C 0.130 3.870 11 H 0.098 0.902 12 C -0.161 4.161 13 C 0.113 3.887 14 N -0.738 5.738 15 C 0.531 3.469 16 O -0.517 6.517 17 C -0.125 4.125 18 S -0.141 6.141 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.879 5.879 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.236 1.236 27 C 0.125 3.875 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.132 0.868 34 H 0.405 0.595 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.400 0.600 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.271 0.729 44 H 0.101 0.899 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.951 8.304 -23.675 28.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.333 3.667 3 O -0.418 6.418 4 N -0.388 5.388 5 C -0.004 4.004 6 C -0.179 4.179 7 C 0.316 3.684 8 O -0.406 6.406 9 N -0.375 5.375 10 C 0.026 3.974 11 H 0.116 0.884 12 C -0.219 4.219 13 C -0.012 4.012 14 N -0.394 5.394 15 C 0.317 3.683 16 O -0.392 6.392 17 C -0.275 4.275 18 S 0.085 5.915 19 C -0.670 4.670 20 H 0.106 0.894 21 C -0.114 4.114 22 N -0.516 5.516 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.160 1.160 27 C 0.002 3.998 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.099 0.901 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.150 0.850 34 H 0.240 0.760 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.234 0.766 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.119 0.881 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.748 7.245 -24.153 28.720 hybrid contribution 0.215 0.944 0.785 1.246 sum -13.533 8.188 -23.368 28.218 Atomic orbital electron populations 1.21844 0.90788 1.05070 1.04875 1.20440 0.90174 0.81114 0.75016 1.90761 1.70783 1.30176 1.50093 1.49624 1.09600 1.05378 1.74157 1.22817 0.96538 0.79966 1.01048 1.23145 0.97860 0.93873 1.03036 1.20063 0.82449 0.83992 0.81936 1.90751 1.33216 1.86190 1.30398 1.46141 1.43494 1.06596 1.41264 1.21288 0.98273 0.84070 0.93809 0.88437 1.22101 1.00920 1.01845 0.97059 1.21628 1.00031 0.95858 0.83641 1.45960 1.65612 1.16484 1.11307 1.20304 0.77995 0.85946 0.84029 1.90713 1.47201 1.17381 1.83867 1.23282 1.03990 1.04285 0.95982 1.84791 1.82156 1.18598 1.05922 1.22304 1.46430 1.01641 0.96621 0.89375 1.24724 0.93511 0.98419 0.94702 1.69938 1.41526 1.37174 1.02930 0.86729 0.81436 0.84634 0.78998 1.19193 1.19924 1.15953 1.22818 0.84201 0.90979 1.01799 0.88701 0.88576 0.90125 0.89120 0.88964 0.85019 0.75967 0.91925 0.91564 0.90973 0.90791 0.89860 0.76557 0.88478 0.88477 0.91899 0.88119 0.89492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.74 10.19 36.01 0.37 -0.37 16 2 C 0.54 4.79 8.19 -10.98 -0.09 4.70 16 3 O -0.54 -7.42 17.88 5.56 0.10 -7.32 16 4 N -0.65 -4.53 3.69 -185.40 -0.68 -5.22 16 5 C 0.12 0.43 7.82 -8.64 -0.07 0.36 16 6 C -0.16 -0.73 4.48 -91.40 -0.41 -1.14 16 7 C 0.53 3.45 7.36 -10.98 -0.08 3.37 16 8 O -0.53 -5.49 15.61 5.56 0.09 -5.41 16 9 N -0.72 -3.63 4.52 -53.81 -0.24 -3.87 16 10 C 0.13 0.82 2.73 -67.94 -0.19 0.63 16 11 H 0.10 0.76 7.58 -51.93 -0.39 0.37 16 12 C -0.16 -0.87 9.48 37.16 0.35 -0.51 16 13 C 0.11 0.93 5.23 -4.04 -0.02 0.91 16 14 N -0.74 -7.67 5.39 -60.29 -0.32 -8.00 16 15 C 0.53 8.43 7.85 -10.98 -0.09 8.34 16 16 O -0.52 -10.23 15.86 5.55 0.09 -10.14 16 17 C -0.12 -2.25 6.16 36.01 0.22 -2.02 16 18 S -0.14 -3.44 18.55 -107.50 -1.99 -5.43 16 19 C -0.52 -14.69 10.04 30.94 0.31 -14.38 16 20 H 0.09 2.59 8.03 -52.49 -0.42 2.17 16 21 C 0.10 2.74 5.50 -17.43 -0.10 2.64 16 22 N -0.88 -26.15 13.97 55.49 0.78 -25.37 16 23 Si 0.86 21.34 27.74 -169.99 -4.71 16.62 16 24 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 25 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.24 -5.82 6.74 56.52 0.38 -5.44 16 27 C 0.12 0.89 7.97 -8.51 -0.07 0.82 16 28 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.19 7.76 -51.93 -0.40 -0.21 16 31 H 0.09 0.12 7.96 -51.93 -0.41 -0.29 16 32 H 0.09 0.29 8.10 -51.93 -0.42 -0.13 16 33 H 0.13 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.41 1.38 8.60 -40.82 -0.35 1.02 16 35 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.40 3.36 8.14 -40.82 -0.33 3.03 16 41 H 0.10 1.65 8.14 -51.92 -0.42 1.23 16 42 H 0.10 1.60 8.14 -51.91 -0.42 1.17 16 43 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.10 0.80 7.45 -51.93 -0.39 0.41 16 45 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 398.65 15.07 6.01 6.01 Total: -1.00 -38.48 398.65 -7.68 -46.16 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -6.93 Total: -1.38 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 0.15 Total: 3.35 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: -0.48 Total: -42.46 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: 0.27 Total: -22.88 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.71 Total: 16.62 kcal Atomic # 16 Polarization: -3.44 SS G_CDS: -1.99 Total: -5.43 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -38.48 -7.68 -46.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001705099557.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.423 kcal (2) G-P(sol) polarization free energy of solvation -38.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds