Wall clock time and date at job start Wed Apr 1 2020 02:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21280 * 119.99689 * 2 1 4 4 N 1.34779 * 119.99860 * 179.97438 * 2 1 3 5 5 C 1.47058 * 136.05768 * 359.62921 * 4 2 1 6 6 C 1.53237 * 88.08329 * 207.20289 * 5 4 2 7 7 C 1.50704 * 114.32805 * 220.47222 * 6 5 4 8 8 O 1.21277 * 120.00203 * 93.75858 * 7 6 5 9 9 N 1.34777 * 119.99974 * 273.75529 * 7 6 5 10 10 C 1.46493 * 120.00095 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.46810 * 35.00455 * 10 9 7 12 12 C 1.52999 * 109.47469 * 275.00507 * 10 9 7 13 13 C 1.52997 * 109.47299 * 155.00351 * 10 9 7 14 14 N 1.46498 * 109.47251 * 305.00497 * 13 10 9 15 15 C 1.34773 * 120.00283 * 180.02562 * 14 13 10 16 16 O 1.21284 * 120.00275 * 359.97438 * 15 14 13 17 17 C 1.50708 * 120.00285 * 179.97438 * 15 14 13 18 18 S 1.80999 * 109.47239 * 179.97438 * 17 15 14 19 19 C 1.76201 * 99.99598 * 179.97438 * 18 17 15 20 20 H 1.07990 * 120.00683 * 0.02562 * 19 18 17 21 21 C 1.38801 * 119.99580 * 180.02562 * 19 18 17 22 22 N 1.31628 * 119.99877 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00193 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47097 * 90.00032 * 23 21 19 25 25 H 1.48501 * 109.47452 * 210.00342 * 23 21 19 26 26 H 1.48502 * 109.47234 * 330.00256 * 23 21 19 27 27 C 1.47065 * 136.05111 * 180.02562 * 4 2 1 28 28 H 1.09002 * 109.47152 * 89.99920 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.00021 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.00002 * 1 2 3 31 31 H 1.08999 * 113.47002 * 321.93558 * 5 4 2 32 32 H 1.09003 * 113.46941 * 92.37774 * 5 4 2 33 33 H 1.09002 * 114.19752 * 87.72906 * 6 5 4 34 34 H 0.96999 * 119.99986 * 0.02562 * 9 7 6 35 35 H 1.08995 * 109.47057 * 299.99954 * 12 10 9 36 36 H 1.08998 * 109.47201 * 60.00043 * 12 10 9 37 37 H 1.09001 * 109.47381 * 179.97438 * 12 10 9 38 38 H 1.09004 * 109.47100 * 64.99931 * 13 10 9 39 39 H 1.08997 * 109.47479 * 185.00506 * 13 10 9 40 40 H 0.97010 * 120.00168 * 359.97438 * 14 13 10 41 41 H 1.09002 * 109.46823 * 300.00194 * 17 15 14 42 42 H 1.09007 * 109.46815 * 59.99491 * 17 15 14 43 43 H 0.97003 * 119.99906 * 179.97438 * 22 21 19 44 44 H 1.09003 * 113.46815 * 267.62024 * 27 4 2 45 45 H 1.08999 * 113.47174 * 38.06396 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.8265 -2.5945 0.0078 6 6 3.1648 -2.8704 0.7014 7 6 3.8767 -4.1040 0.2088 8 8 4.7082 -4.0143 -0.6693 9 7 3.5892 -5.3070 0.7443 10 6 4.2808 -6.5062 0.2652 11 1 5.3092 -6.2537 0.0068 12 6 3.5627 -7.0490 -0.9721 13 6 4.2776 -7.5703 1.3645 14 7 4.8581 -7.0106 2.5876 15 6 4.9596 -7.7720 3.6950 16 8 4.5699 -8.9204 3.6792 17 6 5.5573 -7.1964 4.9531 18 16 5.5534 -8.4552 6.2536 19 6 6.2848 -7.5385 7.5687 20 1 6.5790 -6.5112 7.4126 21 6 6.4827 -8.1368 8.8054 22 7 7.0286 -7.4519 9.7880 23 14 5.9732 -9.9135 9.0757 24 1 7.1074 -10.8106 8.7380 25 1 5.5941 -10.1089 10.4982 26 1 4.8130 -10.2336 8.2059 27 6 3.5942 -1.5739 0.0012 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3633 -0.8900 0.5139 31 1 0.9614 -2.8238 0.6299 32 1 1.7566 -3.0295 -0.9893 33 1 3.1275 -2.7996 1.7885 34 1 2.9238 -5.3788 1.4465 35 1 2.5344 -7.3014 -0.7138 36 1 3.5650 -6.2909 -1.7553 37 1 4.0776 -7.9410 -1.3289 38 1 3.2532 -7.8871 1.5605 39 1 4.8678 -8.4279 1.0417 40 1 5.1702 -6.0922 2.6002 41 1 6.5816 -6.8794 4.7566 42 1 4.9672 -6.3387 5.2762 43 1 7.1666 -7.8699 10.6524 44 1 4.0003 -1.7341 -0.9977 45 1 4.2288 -0.9373 0.6177 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001705099557.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:51 Heat of formation + Delta-G solvation = -105.458307 kcal Electronic energy + Delta-G solvation = -26695.208765 eV Core-core repulsion = 22646.022783 eV Total energy + Delta-G solvation = -4049.185982 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.99850 -40.83034 -40.20967 -38.72406 -37.33304 -34.83756 -34.65318 -32.72782 -31.94062 -30.84926 -29.51240 -27.88328 -27.01316 -26.84498 -25.02473 -22.23684 -21.75671 -21.32681 -20.04386 -19.88565 -18.77971 -18.02990 -17.85421 -17.61121 -17.18014 -17.01467 -16.88575 -16.50297 -16.17705 -15.99453 -15.72756 -15.15457 -14.99632 -14.82644 -14.58162 -14.17073 -14.11271 -13.81985 -13.69374 -13.53240 -13.43778 -13.33789 -13.26962 -13.20542 -12.99242 -12.98232 -12.90941 -12.61187 -12.01568 -11.85862 -11.84319 -11.24575 -11.16130 -11.01984 -10.81639 -10.52070 -10.20411 -10.13937 -9.88025 -8.97667 -8.50431 -6.20963 1.00832 1.32980 1.47557 1.48664 1.51832 1.57186 1.58279 1.66686 2.14010 2.25208 2.30140 2.72920 2.87970 3.11149 3.48864 3.59340 3.78257 3.88654 3.94868 4.08323 4.13683 4.25065 4.29826 4.30746 4.44617 4.49839 4.50534 4.59196 4.63081 4.63597 4.70227 4.77063 4.81652 5.00215 5.03740 5.07813 5.28081 5.40232 5.47507 5.71581 6.12834 6.42263 6.49289 6.62365 6.94775 7.02058 7.18031 7.19832 8.61874 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.012624 B = 0.002047 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.485520 B =13672.577512 C =15227.705714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.530 3.470 3 O -0.605 6.605 4 N -0.652 5.652 5 C 0.128 3.872 6 C -0.141 4.141 7 C 0.536 3.464 8 O -0.571 6.571 9 N -0.710 5.710 10 C 0.141 3.859 11 H 0.084 0.916 12 C -0.155 4.155 13 C 0.116 3.884 14 N -0.712 5.712 15 C 0.539 3.461 16 O -0.559 6.559 17 C -0.114 4.114 18 S -0.173 6.173 19 C -0.529 4.529 20 H 0.061 0.939 21 C 0.043 3.957 22 N -0.918 5.918 23 Si 0.916 3.084 24 H -0.264 1.264 25 H -0.261 1.261 26 H -0.234 1.234 27 C 0.110 3.890 28 H 0.110 0.890 29 H 0.093 0.907 30 H 0.109 0.891 31 H 0.127 0.873 32 H 0.100 0.900 33 H 0.152 0.848 34 H 0.418 0.582 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.413 0.587 41 H 0.108 0.892 42 H 0.116 0.884 43 H 0.276 0.724 44 H 0.088 0.912 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.202 7.091 -24.665 30.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.323 3.677 3 O -0.487 6.487 4 N -0.387 5.387 5 C 0.006 3.994 6 C -0.163 4.163 7 C 0.322 3.678 8 O -0.450 6.450 9 N -0.363 5.363 10 C 0.036 3.964 11 H 0.102 0.898 12 C -0.214 4.214 13 C -0.008 4.008 14 N -0.366 5.366 15 C 0.324 3.676 16 O -0.437 6.437 17 C -0.265 4.265 18 S 0.054 5.946 19 C -0.676 4.676 20 H 0.080 0.920 21 C -0.162 4.162 22 N -0.556 5.556 23 Si 0.738 3.262 24 H -0.189 1.189 25 H -0.185 1.185 26 H -0.157 1.157 27 C -0.013 4.013 28 H 0.128 0.872 29 H 0.112 0.888 30 H 0.128 0.872 31 H 0.145 0.855 32 H 0.118 0.882 33 H 0.170 0.830 34 H 0.255 0.745 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.250 0.750 41 H 0.126 0.874 42 H 0.134 0.866 43 H 0.086 0.914 44 H 0.106 0.894 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.028 6.022 -25.157 30.431 hybrid contribution 0.966 1.413 0.943 1.954 sum -15.062 7.435 -24.214 29.470 Atomic orbital electron populations 1.21867 0.87149 1.06382 1.06230 1.21330 0.91921 0.80586 0.73832 1.90724 1.72290 1.32498 1.53167 1.49755 1.09583 1.06584 1.72808 1.23016 0.96998 0.77308 1.02080 1.23069 0.97999 0.91375 1.03860 1.20267 0.81779 0.84597 0.81185 1.90751 1.35138 1.86724 1.32340 1.46014 1.43269 1.05807 1.41180 1.21114 0.98005 0.83841 0.93480 0.89814 1.22053 1.01634 1.01671 0.96052 1.21766 1.00167 0.96239 0.82657 1.45708 1.63955 1.16504 1.10470 1.19845 0.77778 0.85529 0.84447 1.90708 1.49389 1.19059 1.84513 1.23290 1.05537 1.02692 0.94967 1.84679 1.81693 1.21212 1.07056 1.22473 1.46112 1.00905 0.98145 0.92047 1.25601 0.93619 1.02388 0.94616 1.70023 1.42902 1.39052 1.03632 0.85848 0.81154 0.79771 0.79472 1.18869 1.18528 1.15725 1.22852 0.84674 0.92459 1.01350 0.87154 0.88823 0.87221 0.85488 0.88181 0.83044 0.74478 0.90514 0.92414 0.90552 0.89849 0.90311 0.75026 0.87359 0.86555 0.91426 0.89409 0.90990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 10.19 71.24 0.73 -0.32 16 2 C 0.53 9.09 8.19 87.66 0.72 9.81 16 3 O -0.61 -17.37 17.88 -3.03 -0.05 -17.42 16 4 N -0.65 -8.26 3.69 -858.86 -3.17 -11.43 16 5 C 0.13 0.49 7.82 83.10 0.65 1.14 16 6 C -0.14 -0.99 4.48 -11.30 -0.05 -1.04 16 7 C 0.54 5.82 7.36 87.66 0.65 6.46 16 8 O -0.57 -11.34 15.61 -3.02 -0.05 -11.39 16 9 N -0.71 -4.92 4.52 -442.55 -2.00 -6.92 16 10 C 0.14 1.40 2.73 44.99 0.12 1.52 16 11 H 0.08 1.15 7.58 -2.38 -0.02 1.13 16 12 C -0.16 -1.27 9.48 71.98 0.68 -0.59 16 13 C 0.12 1.56 5.23 86.38 0.45 2.02 16 14 N -0.71 -12.72 5.39 -463.06 -2.49 -15.21 16 15 C 0.54 15.86 7.85 87.66 0.69 16.55 16 16 O -0.56 -21.12 15.86 -3.04 -0.05 -21.17 16 17 C -0.11 -3.90 6.16 71.24 0.44 -3.46 16 18 S -0.17 -8.30 18.55 -56.49 -1.05 -9.35 16 19 C -0.53 -29.91 10.04 67.95 0.68 -29.23 16 20 H 0.06 3.67 8.03 -2.92 -0.02 3.65 16 21 C 0.04 2.48 5.50 84.86 0.47 2.94 16 22 N -0.92 -55.15 13.97 21.65 0.30 -54.84 16 23 Si 0.92 43.90 27.74 68.60 1.90 45.80 16 24 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16 25 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 26 H -0.23 -11.04 6.74 99.48 0.67 -10.37 16 27 C 0.11 1.56 7.97 83.18 0.66 2.22 16 28 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.11 0.08 7.76 -2.38 -0.02 0.06 16 31 H 0.13 -0.34 7.96 -2.39 -0.02 -0.36 16 32 H 0.10 0.30 8.10 -2.39 -0.02 0.28 16 33 H 0.15 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.42 1.08 8.60 -92.71 -0.80 0.28 16 35 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.08 1.24 8.14 -2.39 -0.02 1.23 16 40 H 0.41 5.57 8.14 -92.70 -0.75 4.81 16 41 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 42 H 0.12 3.55 8.14 -2.39 -0.02 3.53 16 43 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 44 H 0.09 1.47 7.45 -2.39 -0.02 1.45 16 45 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -87.16 398.65 -0.34 -87.51 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -0.57 Total: 6.38 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 6.88 Total: 8.04 kcal Atomic # 7 Polarization: -81.03 SS G_CDS: -7.36 Total: -88.40 kcal Atomic # 8 Polarization: -49.83 SS G_CDS: -0.15 Total: -49.98 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.90 Total: 45.80 kcal Atomic # 16 Polarization: -8.30 SS G_CDS: -1.05 Total: -9.35 kcal Total: -87.16 -0.34 -87.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001705099557.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.953 kcal (2) G-P(sol) polarization free energy of solvation -87.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds