Wall clock time and date at job start Wed Apr 1 2020 01:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.46763 * 2 1 4 4 C 1.53005 * 109.46958 * 240.00614 * 2 1 3 5 5 C 1.50703 * 109.47064 * 64.99700 * 4 2 1 6 6 N 1.34782 * 119.99872 * 179.97438 * 5 4 2 7 7 O 1.21275 * 120.00433 * 0.02562 * 5 4 2 8 8 C 1.50692 * 109.47345 * 120.00643 * 2 1 3 9 9 O 1.21284 * 120.00368 * 120.00067 * 8 2 1 10 10 N 1.34779 * 119.99595 * 299.99886 * 8 2 1 11 11 C 1.46502 * 119.99838 * 184.69751 * 10 8 2 12 12 C 1.52996 * 115.56290 * 270.62054 * 11 10 8 13 13 N 1.46501 * 109.47204 * 324.97416 * 12 11 10 14 14 C 1.34775 * 120.00081 * 174.85141 * 13 12 11 15 15 O 1.21283 * 119.99986 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99730 * 180.02562 * 14 13 12 17 17 S 1.81003 * 109.46921 * 179.97438 * 16 14 13 18 18 C 1.76201 * 100.00066 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99721 * 0.02562 * 18 17 16 20 20 C 1.38794 * 120.00153 * 180.02562 * 18 17 16 21 21 N 1.31632 * 120.00033 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00036 * 180.02562 * 20 18 17 23 23 H 1.48489 * 109.47536 * 59.99344 * 22 20 18 24 24 H 1.48505 * 109.47094 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47009 * 299.99438 * 22 20 18 26 26 C 1.53010 * 117.49816 * 56.30684 * 11 10 8 27 27 C 1.53003 * 60.03035 * 107.47623 * 26 11 10 28 28 H 1.09005 * 109.46983 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47489 * 299.99365 * 1 2 3 30 30 H 1.09007 * 109.47719 * 59.99752 * 1 2 3 31 31 H 1.08990 * 109.47013 * 184.99653 * 4 2 1 32 32 H 1.08999 * 109.46894 * 305.00090 * 4 2 1 33 33 H 0.97002 * 119.99537 * 0.02562 * 6 5 4 34 34 H 0.96992 * 120.00094 * 180.02562 * 6 5 4 35 35 H 0.96998 * 120.00662 * 4.69931 * 10 8 2 36 36 H 1.09001 * 109.47326 * 84.98116 * 12 11 10 37 37 H 1.09005 * 109.46586 * 204.97902 * 12 11 10 38 38 H 0.97005 * 119.99492 * 354.85213 * 13 12 11 39 39 H 1.08994 * 109.47321 * 299.99736 * 16 14 13 40 40 H 1.09007 * 109.47163 * 60.00038 * 16 14 13 41 41 H 0.96998 * 119.99926 * 180.02562 * 21 20 18 42 42 H 1.08994 * 117.50026 * 214.98024 * 26 11 10 43 43 H 1.09004 * 117.49671 * 359.97438 * 26 11 10 44 44 H 1.09002 * 117.49776 * 107.50520 * 27 26 11 45 45 H 1.08998 * 117.49884 * 252.51652 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 1.6412 0.0573 -2.4766 6 7 1.9852 -0.3911 -3.7003 7 8 1.0116 1.0876 -2.3633 8 6 2.0323 -0.7105 1.2303 9 8 2.7296 -1.6966 1.1190 10 7 1.7067 -0.2501 2.4544 11 6 2.2777 -0.8776 3.6488 12 6 1.4787 -2.0480 4.2256 13 7 0.0464 -1.7951 4.0501 14 6 -0.8515 -2.7408 4.3904 15 8 -0.4738 -3.8013 4.8414 16 6 -2.3248 -2.4808 4.2093 17 16 -3.2643 -3.9296 4.7519 18 6 -4.9041 -3.3657 4.4393 19 1 -5.0671 -2.3800 4.0291 20 6 -5.9862 -4.1881 4.7202 21 7 -5.7875 -5.3897 5.2197 22 14 -7.7246 -3.5905 4.3881 23 1 -7.8744 -3.2815 2.9434 24 1 -8.6935 -4.6491 4.7704 25 1 -7.9881 -2.3661 5.1861 26 6 3.8029 -0.9451 3.7508 27 6 3.0199 0.0267 4.6360 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3635 0.5139 -0.8900 31 1 3.1262 -0.7993 -1.2058 32 1 1.6053 -1.7197 -1.2953 33 1 2.4891 -1.2150 -3.7909 34 1 1.7288 0.1101 -4.4901 35 1 1.0944 0.4967 2.5448 36 1 1.7521 -2.9660 3.7054 37 1 1.7019 -2.1518 5.2875 38 1 -0.2556 -0.9469 3.6890 39 1 -2.6167 -1.6147 4.8032 40 1 -2.5329 -2.2865 3.1570 41 1 -6.5438 -5.9646 5.4156 42 1 4.2370 -1.8231 4.2288 43 1 4.3814 -0.5229 2.9291 44 1 2.9390 -0.2120 5.6964 45 1 3.0831 1.0882 4.3964 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001705249167.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:48:21 Heat of formation + Delta-G solvation = -127.623443 kcal Electronic energy + Delta-G solvation = -27432.691082 eV Core-core repulsion = 23382.543948 eV Total energy + Delta-G solvation = -4050.147134 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.57783 -40.71399 -40.18654 -38.50385 -35.31440 -35.24415 -34.64128 -34.57851 -33.63078 -31.29420 -28.82757 -27.87633 -27.30248 -25.44797 -23.56089 -22.34871 -21.78492 -21.01034 -20.53273 -19.86162 -18.67959 -18.28608 -17.92116 -17.74221 -17.03951 -16.87546 -16.78636 -16.57173 -16.45018 -15.95662 -15.75119 -15.50846 -15.01059 -14.79374 -14.62925 -14.51497 -14.34088 -14.10352 -13.69230 -13.48650 -13.38470 -13.16749 -12.98655 -12.86114 -12.63217 -12.41706 -12.21286 -12.11298 -11.92207 -11.74193 -11.29724 -11.12510 -11.01876 -10.94220 -10.74486 -10.55959 -10.27974 -10.22620 -10.11402 -8.66823 -8.34060 -6.12448 1.25967 1.44345 1.46290 1.55831 1.58921 1.59335 1.63700 1.87909 2.24906 2.28545 2.70101 2.70787 3.00026 3.32014 3.47193 3.57980 3.78435 3.85359 3.91524 3.96217 4.06297 4.17320 4.28094 4.39656 4.48899 4.51299 4.61074 4.65802 4.70159 4.72357 4.76761 4.91743 4.99866 5.05765 5.20154 5.29313 5.33344 5.42019 5.54932 5.92482 6.20090 6.43321 6.45203 6.48678 7.07049 7.19716 7.22932 7.34940 8.74955 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.009637 B = 0.002669 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2904.905305 B =10489.469101 C =12676.192739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 H 0.117 0.883 4 C -0.124 4.124 5 C 0.519 3.481 6 N -0.841 5.841 7 O -0.580 6.580 8 C 0.523 3.477 9 O -0.564 6.564 10 N -0.688 5.688 11 C 0.067 3.933 12 C 0.156 3.844 13 N -0.704 5.704 14 C 0.533 3.467 15 O -0.566 6.566 16 C -0.128 4.128 17 S -0.151 6.151 18 C -0.546 4.546 19 H 0.084 0.916 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 0.998 3.002 23 H -0.262 1.262 24 H -0.280 1.280 25 H -0.261 1.261 26 C -0.152 4.152 27 C -0.139 4.139 28 H 0.046 0.954 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.112 0.888 32 H 0.100 0.900 33 H 0.417 0.583 34 H 0.407 0.593 35 H 0.417 0.583 36 H 0.046 0.954 37 H 0.080 0.920 38 H 0.412 0.588 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.271 0.729 42 H 0.104 0.896 43 H 0.098 0.902 44 H 0.118 0.882 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.583 17.986 -12.844 30.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.108 4.108 3 H 0.135 0.865 4 C -0.164 4.164 5 C 0.304 3.696 6 N -0.404 5.404 7 O -0.460 6.460 8 C 0.311 3.689 9 O -0.441 6.441 10 N -0.341 5.341 11 C -0.021 4.021 12 C 0.031 3.969 13 N -0.358 5.358 14 C 0.319 3.681 15 O -0.444 6.444 16 C -0.279 4.279 17 S 0.076 5.924 18 C -0.694 4.694 19 H 0.102 0.898 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.187 1.187 24 H -0.205 1.205 25 H -0.185 1.185 26 C -0.190 4.190 27 C -0.177 4.177 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.130 0.870 32 H 0.119 0.881 33 H 0.247 0.753 34 H 0.239 0.761 35 H 0.256 0.744 36 H 0.065 0.935 37 H 0.098 0.902 38 H 0.249 0.751 39 H 0.131 0.869 40 H 0.125 0.875 41 H 0.080 0.920 42 H 0.122 0.878 43 H 0.116 0.884 44 H 0.136 0.864 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 21.283 16.004 -11.875 29.157 hybrid contribution -1.689 1.289 -1.161 2.421 sum 19.594 17.293 -13.036 29.205 Atomic orbital electron populations 1.21905 0.92165 1.02175 1.04493 1.20972 0.98222 1.01083 0.90491 0.86519 1.21450 1.04347 0.99959 0.90631 1.20730 0.77875 0.84788 0.86179 1.43770 1.59159 1.29911 1.07595 1.90709 1.41626 1.26327 1.87341 1.20956 0.79158 0.83678 0.85152 1.90713 1.39492 1.26770 1.87156 1.45172 1.49050 1.36455 1.03451 1.20667 0.93642 0.97869 0.89916 1.21029 0.78980 0.96484 1.00428 1.45519 1.05667 1.18583 1.66050 1.20107 0.87799 0.83525 0.76717 1.90699 1.81216 1.26848 1.45663 1.23349 0.93959 1.04333 1.06232 1.85616 1.01847 1.20548 1.84429 1.23168 0.91584 1.04856 1.49753 0.89820 1.26135 1.04463 0.94563 0.94016 1.70181 1.33370 1.09238 1.42045 0.85006 0.75605 0.78147 0.79257 1.18695 1.20470 1.18523 1.23192 0.90859 1.02473 1.02488 1.23621 0.98991 0.97971 0.97111 0.93463 0.90353 0.90545 0.87021 0.88138 0.75259 0.76111 0.74433 0.93538 0.90177 0.75079 0.86869 0.87458 0.92004 0.87776 0.88378 0.86409 0.86042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 8.83 71.98 0.64 -1.73 16 2 C -0.09 -1.26 2.38 -11.54 -0.03 -1.29 16 3 H 0.12 1.48 7.95 -2.39 -0.02 1.46 16 4 C -0.12 -1.70 4.52 29.85 0.13 -1.57 16 5 C 0.52 7.73 7.82 87.66 0.69 8.41 16 6 N -0.84 -6.62 8.87 -173.53 -1.54 -8.16 16 7 O -0.58 -12.84 14.80 -3.02 -0.04 -12.88 16 8 C 0.52 9.51 7.00 87.65 0.61 10.12 16 9 O -0.56 -14.48 15.31 -3.04 -0.05 -14.53 16 10 N -0.69 -9.53 4.41 -422.80 -1.86 -11.39 16 11 C 0.07 1.08 2.15 3.63 0.01 1.09 16 12 C 0.16 3.71 5.90 86.38 0.51 4.22 16 13 N -0.70 -17.98 5.40 -463.06 -2.50 -20.48 16 14 C 0.53 19.92 7.85 87.66 0.69 20.61 16 15 O -0.57 -26.85 15.86 -3.04 -0.05 -26.90 16 16 C -0.13 -5.04 6.16 71.24 0.44 -4.60 16 17 S -0.15 -8.46 20.57 -56.49 -1.16 -9.62 16 18 C -0.55 -31.13 9.50 67.95 0.65 -30.49 16 19 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 20 C 0.01 0.74 5.49 84.86 0.47 1.20 16 21 N -0.91 -56.28 13.22 21.65 0.29 -56.00 16 22 Si 1.00 43.54 29.55 68.60 2.03 45.57 16 23 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 24 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 25 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 26 C -0.15 -2.24 9.24 30.60 0.28 -1.96 16 27 C -0.14 -1.42 10.11 30.62 0.31 -1.11 16 28 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.08 0.91 7.47 -2.39 -0.02 0.89 16 30 H 0.08 1.44 5.95 -2.38 -0.01 1.43 16 31 H 0.11 1.34 7.95 -2.39 -0.02 1.32 16 32 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.42 1.08 8.83 -92.71 -0.82 0.27 16 34 H 0.41 2.58 8.93 -92.71 -0.83 1.75 16 35 H 0.42 3.40 7.97 -92.71 -0.74 2.66 16 36 H 0.05 1.42 8.13 -2.39 -0.02 1.40 16 37 H 0.08 1.85 7.91 -2.38 -0.02 1.83 16 38 H 0.41 7.58 7.65 -92.70 -0.71 6.87 16 39 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 40 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 41 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 42 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.12 1.06 8.06 -2.39 -0.02 1.04 16 45 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -87.38 396.17 -1.53 -88.92 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: -2.03 Total: 22.56 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: 5.39 Total: 2.91 kcal Atomic # 7 Polarization: -90.41 SS G_CDS: -5.62 Total: -96.03 kcal Atomic # 8 Polarization: -54.17 SS G_CDS: -0.14 Total: -54.31 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.16 Total: -9.62 kcal Total: -87.38 -1.53 -88.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001705249167.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.706 kcal (2) G-P(sol) polarization free energy of solvation -87.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds