Wall clock time and date at job start Wed Apr 1 2020 01:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47241 * 2 1 4 4 C 1.53006 * 109.46804 * 119.99633 * 2 1 3 5 5 C 1.50696 * 109.47330 * 295.00227 * 4 2 1 6 6 N 1.34777 * 119.99979 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99830 * 359.97438 * 5 4 2 8 8 C 1.50701 * 109.47033 * 239.99385 * 2 1 3 9 9 O 1.21277 * 120.00162 * 239.99774 * 8 2 1 10 10 N 1.34778 * 119.99514 * 60.00602 * 8 2 1 11 11 C 1.46499 * 119.99646 * 174.99101 * 10 8 2 12 12 C 1.53004 * 115.55313 * 279.60613 * 11 10 8 13 13 N 1.46506 * 109.46650 * 324.96973 * 12 11 10 14 14 C 1.34778 * 119.99607 * 174.91369 * 13 12 11 15 15 O 1.21270 * 120.00116 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99567 * 180.02562 * 14 13 12 17 17 S 1.80997 * 109.46926 * 180.02562 * 16 14 13 18 18 C 1.76204 * 100.00064 * 179.97438 * 17 16 14 19 19 H 1.08004 * 119.99927 * 359.97438 * 18 17 16 20 20 C 1.38804 * 120.00113 * 179.97438 * 18 17 16 21 21 N 1.31631 * 119.99659 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 119.99750 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47451 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.47040 * 120.00175 * 22 20 18 25 25 H 1.48501 * 109.47172 * 239.99619 * 22 20 18 26 26 C 1.52997 * 117.49835 * 133.89661 * 11 10 8 27 27 C 1.52998 * 117.49901 * 65.27280 * 11 10 8 28 28 H 1.08997 * 109.47241 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47243 * 300.00530 * 1 2 3 30 30 H 1.09001 * 109.46971 * 59.99894 * 1 2 3 31 31 H 1.09001 * 109.46668 * 55.00049 * 4 2 1 32 32 H 1.08997 * 109.46716 * 174.99456 * 4 2 1 33 33 H 0.96998 * 120.00014 * 359.97438 * 6 5 4 34 34 H 0.96999 * 119.99823 * 179.97438 * 6 5 4 35 35 H 0.96996 * 120.00100 * 354.98627 * 10 8 2 36 36 H 1.08995 * 109.47139 * 84.96463 * 12 11 10 37 37 H 1.08993 * 109.47198 * 204.96854 * 12 11 10 38 38 H 0.97004 * 119.99968 * 354.90309 * 13 12 11 39 39 H 1.09006 * 109.46908 * 299.99405 * 16 14 13 40 40 H 1.08996 * 109.47342 * 59.99181 * 16 14 13 41 41 H 0.97002 * 119.99473 * 180.02562 * 21 20 18 42 42 H 1.09001 * 117.50391 * 359.97438 * 26 11 10 43 43 H 1.09004 * 117.50077 * 145.02364 * 26 11 10 44 44 H 1.09007 * 117.50192 * 214.97527 * 27 11 10 45 45 H 1.09001 * 117.50005 * 359.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 1.6412 0.0571 2.4766 6 7 1.9852 -0.3913 3.7002 7 8 1.0116 1.0874 2.3632 8 6 2.0323 -0.7105 -1.2304 9 8 2.7296 -1.6966 -1.1191 10 7 1.7067 -0.2501 -2.4545 11 6 2.2829 -0.8732 -3.6486 12 6 3.7039 -0.4306 -4.0036 13 7 3.8724 0.9854 -3.6677 14 6 5.0798 1.5699 -3.7987 15 8 6.0266 0.9237 -4.1942 16 6 5.2533 3.0264 -3.4527 17 16 6.9742 3.5121 -3.7326 18 6 6.8936 5.2085 -3.2631 19 1 5.9582 5.6324 -2.9288 20 6 8.0323 6.0001 -3.3229 21 7 9.1724 5.4832 -3.7299 22 14 7.9465 7.7986 -2.8259 23 1 6.5608 8.1315 -2.4088 24 1 8.8761 8.0442 -1.6940 25 1 8.3350 8.6499 -3.9790 26 6 1.3340 -1.1971 -4.8042 27 6 1.9017 -2.3258 -3.9412 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6052 -1.7197 1.2952 32 1 3.1262 -0.7995 1.2056 33 1 2.4890 -1.2152 3.7908 34 1 1.7288 0.1099 4.4901 35 1 1.0909 0.4939 -2.5449 36 1 4.4215 -1.0258 -3.4391 37 1 3.8729 -0.5735 -5.0709 38 1 3.1150 1.5023 -3.3512 39 1 4.5989 3.6298 -4.0819 40 1 4.9965 3.1840 -2.4052 41 1 9.9682 6.0363 -3.7714 42 1 0.2808 -0.9470 -4.6759 43 1 1.7218 -1.0948 -5.8177 44 1 2.6631 -2.9660 -4.3871 45 1 1.2226 -2.8179 -3.2450 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001705249168.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:48:23 Heat of formation + Delta-G solvation = -128.024136 kcal Electronic energy + Delta-G solvation = -27456.322777 eV Core-core repulsion = 23406.158267 eV Total energy + Delta-G solvation = -4050.164509 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.57382 -40.72290 -40.18511 -38.52250 -35.29475 -35.26622 -34.65192 -34.58809 -33.63415 -31.30472 -28.82710 -27.87880 -27.29627 -25.43701 -23.55485 -22.35549 -21.78934 -21.03205 -20.54001 -19.85646 -18.66035 -18.30691 -17.92404 -17.75233 -17.10200 -16.88814 -16.72580 -16.60375 -16.45651 -16.02362 -15.65636 -15.38513 -15.28894 -14.71264 -14.60130 -14.47199 -14.35709 -14.15166 -13.69743 -13.47468 -13.37614 -13.16621 -12.96738 -12.91616 -12.60917 -12.40261 -12.21597 -12.11621 -11.91866 -11.71463 -11.30298 -11.16307 -11.02340 -10.97979 -10.75174 -10.56791 -10.28550 -10.19923 -10.11659 -8.67698 -8.35322 -6.13522 1.25373 1.41184 1.45704 1.56889 1.57718 1.59544 1.62881 1.88877 2.23908 2.27306 2.69687 2.71612 2.98985 3.30970 3.46828 3.58033 3.79003 3.85135 3.91660 3.97661 4.05299 4.16948 4.26386 4.39248 4.47531 4.51383 4.60916 4.65420 4.70986 4.72305 4.77332 4.93915 5.00652 5.06512 5.20984 5.29583 5.34565 5.41717 5.54502 5.91696 6.19608 6.42752 6.44176 6.49362 7.06112 7.18991 7.22783 7.34267 8.74207 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.008905 B = 0.002825 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3143.656681 B = 9910.079588 C =12219.486506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.093 4.093 3 H 0.102 0.898 4 C -0.123 4.123 5 C 0.518 3.482 6 N -0.841 5.841 7 O -0.580 6.580 8 C 0.524 3.476 9 O -0.564 6.564 10 N -0.688 5.688 11 C 0.067 3.933 12 C 0.155 3.845 13 N -0.705 5.705 14 C 0.533 3.467 15 O -0.565 6.565 16 C -0.128 4.128 17 S -0.150 6.150 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.257 1.257 24 H -0.274 1.274 25 H -0.273 1.273 26 C -0.137 4.137 27 C -0.154 4.154 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.417 0.583 34 H 0.407 0.593 35 H 0.418 0.582 36 H 0.046 0.954 37 H 0.081 0.919 38 H 0.413 0.587 39 H 0.113 0.887 40 H 0.106 0.894 41 H 0.271 0.729 42 H 0.124 0.876 43 H 0.117 0.883 44 H 0.102 0.898 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.027 -15.176 8.257 30.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.114 4.114 3 H 0.121 0.879 4 C -0.163 4.163 5 C 0.303 3.697 6 N -0.404 5.404 7 O -0.461 6.461 8 C 0.312 3.688 9 O -0.441 6.441 10 N -0.341 5.341 11 C -0.021 4.021 12 C 0.030 3.970 13 N -0.359 5.359 14 C 0.318 3.682 15 O -0.443 6.443 16 C -0.280 4.280 17 S 0.077 5.923 18 C -0.693 4.693 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.180 1.180 24 H -0.200 1.200 25 H -0.198 1.198 26 C -0.175 4.175 27 C -0.193 4.193 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.132 0.868 32 H 0.117 0.883 33 H 0.248 0.752 34 H 0.239 0.761 35 H 0.257 0.743 36 H 0.064 0.936 37 H 0.099 0.901 38 H 0.250 0.750 39 H 0.131 0.869 40 H 0.124 0.876 41 H 0.080 0.920 42 H 0.142 0.858 43 H 0.136 0.864 44 H 0.121 0.879 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -23.190 -16.323 7.400 29.308 hybrid contribution -0.769 1.943 1.258 2.439 sum -23.959 -14.381 8.658 29.254 Atomic orbital electron populations 1.21851 0.90948 1.02778 1.04337 1.21013 0.99271 1.00566 0.90598 0.87948 1.21445 1.03823 1.00448 0.90622 1.20756 0.77905 0.84808 0.86215 1.43766 1.59124 1.29938 1.07599 1.90712 1.41867 1.26139 1.87336 1.20914 0.79011 0.83762 0.85159 1.90707 1.38979 1.27293 1.87161 1.45171 1.48303 1.37164 1.03451 1.20650 0.92613 0.99460 0.89356 1.21032 0.94638 0.80836 1.00473 1.45545 1.10482 1.11541 1.68340 1.20097 0.82854 0.88500 0.76713 1.90693 1.41151 1.65681 1.46810 1.23355 1.03124 0.95498 1.05981 1.85596 1.07033 1.12082 1.87603 1.23237 0.99300 0.95317 1.51494 0.89905 1.26133 0.93909 1.04663 0.94444 1.70193 1.00799 1.38516 1.45258 0.84899 0.79012 0.75974 0.78022 1.18020 1.19992 1.19814 1.23586 0.99470 0.99488 0.94908 1.23226 1.03340 0.90221 1.02488 0.91994 0.90870 0.90367 0.86809 0.88346 0.75247 0.76123 0.74334 0.93565 0.90124 0.75049 0.86881 0.87603 0.91985 0.85832 0.86446 0.87931 0.88236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.83 71.98 0.64 -1.09 16 2 C -0.09 -1.45 2.38 -11.54 -0.03 -1.48 16 3 H 0.10 1.76 7.95 -2.39 -0.02 1.74 16 4 C -0.12 -1.84 4.52 29.85 0.13 -1.70 16 5 C 0.52 8.49 7.82 87.66 0.69 9.18 16 6 N -0.84 -7.83 8.87 -173.54 -1.54 -9.36 16 7 O -0.58 -13.84 14.80 -3.03 -0.04 -13.88 16 8 C 0.52 9.79 7.08 87.66 0.62 10.41 16 9 O -0.56 -14.80 15.49 -3.02 -0.05 -14.84 16 10 N -0.69 -9.49 4.32 -422.92 -1.83 -11.32 16 11 C 0.07 1.08 2.02 3.60 0.01 1.09 16 12 C 0.16 3.74 5.90 86.38 0.51 4.25 16 13 N -0.71 -18.41 5.40 -463.06 -2.50 -20.91 16 14 C 0.53 20.21 7.85 87.66 0.69 20.90 16 15 O -0.57 -27.00 15.86 -3.00 -0.05 -27.05 16 16 C -0.13 -5.16 6.16 71.24 0.44 -4.73 16 17 S -0.15 -8.45 20.57 -56.49 -1.16 -9.62 16 18 C -0.55 -31.41 9.50 67.96 0.65 -30.76 16 19 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 20 C 0.01 0.76 5.49 84.86 0.47 1.22 16 21 N -0.91 -56.36 13.22 21.65 0.29 -56.08 16 22 Si 1.00 43.89 29.55 68.60 2.03 45.92 16 23 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 24 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 26 C -0.14 -1.34 10.10 30.59 0.31 -1.03 16 27 C -0.15 -2.23 9.56 30.59 0.29 -1.94 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 1.17 5.95 -2.39 -0.01 1.16 16 30 H 0.08 0.63 7.46 -2.39 -0.02 0.62 16 31 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.10 1.63 7.95 -2.39 -0.02 1.61 16 33 H 0.42 1.61 8.83 -92.71 -0.82 0.79 16 34 H 0.41 3.18 8.93 -92.71 -0.83 2.36 16 35 H 0.42 3.27 8.11 -92.71 -0.75 2.52 16 36 H 0.05 1.43 8.13 -2.39 -0.02 1.41 16 37 H 0.08 1.88 7.91 -2.39 -0.02 1.86 16 38 H 0.41 7.93 7.76 -92.71 -0.72 7.21 16 39 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 40 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 41 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 42 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.12 1.03 8.05 -2.39 -0.02 1.01 16 44 H 0.10 1.53 8.14 -2.38 -0.02 1.52 16 45 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -88.05 396.76 -1.50 -89.55 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: -2.05 Total: 23.27 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: 5.41 Total: 4.32 kcal Atomic # 7 Polarization: -92.09 SS G_CDS: -5.58 Total: -97.67 kcal Atomic # 8 Polarization: -55.64 SS G_CDS: -0.14 Total: -55.78 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.16 Total: -9.62 kcal Total: -88.05 -1.50 -89.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001705249168.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.471 kcal (2) G-P(sol) polarization free energy of solvation -88.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds