Wall clock time and date at job start Wed Apr 1 2020 01:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47177 * 2 1 4 4 C 1.53007 * 109.47028 * 239.99859 * 2 1 3 5 5 N 1.46896 * 109.47124 * 185.00066 * 4 2 1 6 6 C 1.46901 * 111.00086 * 287.99844 * 5 4 2 7 7 C 1.46899 * 110.99929 * 164.04469 * 5 4 2 8 8 H 1.08995 * 109.57406 * 309.54650 * 7 5 4 9 9 C 1.53241 * 109.52091 * 69.70999 * 7 5 4 10 10 C 1.53251 * 108.56447 * 175.52273 * 9 7 5 11 11 C 1.50594 * 109.15649 * 304.37973 * 10 9 7 12 12 O 1.21230 * 119.35310 * 209.09677 * 11 10 9 13 13 N 1.34131 * 121.28053 * 29.11987 * 11 10 9 14 14 C 1.34139 * 122.59162 * 359.43149 * 13 11 10 15 15 O 1.21230 * 119.36462 * 180.54348 * 14 13 11 16 16 N 1.46497 * 109.47007 * 119.99844 * 2 1 3 17 17 C 1.34779 * 120.00244 * 274.99599 * 16 2 1 18 18 O 1.21284 * 119.99696 * 0.02562 * 17 16 2 19 19 C 1.50692 * 120.00239 * 180.02562 * 17 16 2 20 20 S 1.80996 * 109.47122 * 180.02562 * 19 17 16 21 21 C 1.76206 * 100.00027 * 180.02562 * 20 19 17 22 22 H 1.07997 * 119.99713 * 359.97438 * 21 20 19 23 23 C 1.38797 * 120.00061 * 180.02562 * 21 20 19 24 24 N 1.31629 * 120.00254 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00031 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47403 * 59.99466 * 25 23 21 27 27 H 1.48500 * 109.47465 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47253 * 299.99696 * 25 23 21 29 29 H 1.08996 * 109.46750 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46527 * 300.00248 * 1 2 3 31 31 H 1.09002 * 109.46719 * 59.99739 * 1 2 3 32 32 H 1.09000 * 109.46755 * 65.00141 * 4 2 1 33 33 H 1.09002 * 109.46875 * 305.00252 * 4 2 1 34 34 H 1.09005 * 109.47076 * 296.05133 * 6 5 4 35 35 H 1.09005 * 109.47069 * 56.04484 * 6 5 4 36 36 H 1.08990 * 109.47677 * 176.04562 * 6 5 4 37 37 H 1.08990 * 109.62554 * 55.79245 * 9 7 5 38 38 H 1.09000 * 109.61875 * 295.23671 * 9 7 5 39 39 H 1.08991 * 109.52470 * 64.28517 * 10 9 7 40 40 H 1.09000 * 109.52184 * 184.47897 * 10 9 7 41 41 H 0.97001 * 118.70803 * 179.45081 * 13 11 10 42 42 H 0.97003 * 119.99499 * 95.00318 * 16 2 1 43 43 H 1.09009 * 109.46973 * 300.00389 * 19 17 16 44 44 H 1.08996 * 109.47339 * 59.99837 * 19 17 16 45 45 H 0.96997 * 120.00584 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5040 -0.8268 -1.1905 6 6 4.1354 0.4808 -1.4133 7 6 3.9993 -1.8211 -2.1517 8 1 3.4461 -2.7525 -2.0312 9 6 3.8095 -1.2935 -3.5778 10 6 4.4336 -2.2950 -4.5556 11 6 5.8749 -2.5187 -4.1810 12 8 6.6748 -2.8108 -5.0439 13 7 6.2908 -2.4016 -2.9112 14 6 5.4641 -2.0711 -1.9078 15 8 5.9047 -1.9718 -0.7828 16 7 2.0183 -0.6906 1.1962 17 6 2.1471 -0.0182 2.3571 18 8 1.8583 1.1585 2.4117 19 6 2.6500 -0.7284 3.5874 20 16 2.7101 0.4345 4.9731 21 6 3.3148 -0.6304 6.2401 22 1 3.5247 -1.6666 6.0200 23 6 3.5202 -0.1376 7.5213 24 7 3.2639 1.1252 7.7898 25 14 4.1606 -1.2666 8.8647 26 1 5.4877 -1.8033 8.4695 27 1 4.2931 -0.5033 10.1315 28 1 3.2105 -2.3910 9.0609 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.7517 -0.1583 -2.1370 33 1 1.6054 -1.7199 -1.2952 34 1 3.9087 0.8266 -2.4219 35 1 3.7509 1.1982 -0.6883 36 1 5.2149 0.3880 -1.2951 37 1 4.3028 -0.3269 -3.6792 38 1 2.7456 -1.1886 -3.7907 39 1 3.8929 -3.2399 -4.5039 40 1 4.3781 -1.8974 -5.5691 41 1 7.2262 -2.5618 -2.7105 42 1 2.2491 -1.6317 1.1525 43 1 1.9777 -1.5508 3.8325 44 1 3.6492 -1.1203 3.3979 45 1 3.4078 1.4697 8.6851 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716017565.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:33 Heat of formation + Delta-G solvation = -98.052708 kcal Electronic energy + Delta-G solvation = -27913.877305 eV Core-core repulsion = 23865.012454 eV Total energy + Delta-G solvation = -4048.864851 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.05840 -39.69998 -39.17661 -37.99024 -35.81889 -34.95143 -33.08647 -32.36317 -31.32247 -28.67026 -28.44714 -27.52071 -25.41663 -25.06550 -24.07723 -22.82413 -21.18068 -20.10335 -19.50706 -18.19504 -17.86116 -17.60255 -16.99738 -16.41700 -16.15352 -15.99200 -15.26902 -15.25587 -15.00453 -14.76468 -14.74962 -14.70457 -14.25520 -13.95564 -13.64600 -13.23367 -13.13244 -12.89943 -12.76290 -12.54909 -12.40263 -12.23709 -12.07719 -11.97503 -11.83879 -11.57600 -11.01141 -10.98245 -10.96960 -10.83535 -10.70841 -10.64367 -10.50892 -9.75065 -9.26141 -8.99796 -8.79946 -8.72217 -8.15415 -6.41519 -6.15176 -3.84532 1.06219 2.19494 2.33377 3.09897 3.19492 3.25913 3.28395 3.32086 3.37708 3.44808 3.84277 3.89488 3.97249 4.14857 4.27351 4.39967 4.46466 4.64154 4.76957 4.91537 4.97359 5.03047 5.05604 5.11543 5.19781 5.21199 5.32685 5.33462 5.38144 5.55979 5.57440 5.71799 5.75838 5.99716 6.03126 6.11490 6.26863 6.28836 6.44871 6.51442 6.83717 6.93073 7.40943 7.66068 7.90752 8.41936 8.78190 9.30151 10.92243 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.014913 B = 0.002418 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.125223 B =11575.032293 C =12973.064515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.149 3.851 3 H 0.087 0.913 4 C 0.047 3.953 5 N -0.511 5.511 6 C 0.013 3.987 7 C 0.068 3.932 8 H 0.126 0.874 9 C -0.164 4.164 10 C -0.137 4.137 11 C 0.524 3.476 12 O -0.507 6.507 13 N -0.677 5.677 14 C 0.520 3.480 15 O -0.462 6.462 16 N -0.718 5.718 17 C 0.536 3.464 18 O -0.525 6.525 19 C -0.152 4.152 20 S -0.062 6.062 21 C -0.533 4.533 22 H 0.071 0.929 23 C 0.073 3.927 24 N -0.869 5.869 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.034 0.966 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.413 0.587 42 H 0.400 0.600 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.435 -7.970 -28.807 29.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.043 3.957 3 H 0.105 0.895 4 C -0.081 4.081 5 N -0.233 5.233 6 C -0.135 4.135 7 C -0.044 4.044 8 H 0.144 0.856 9 C -0.204 4.204 10 C -0.178 4.178 11 C 0.313 3.687 12 O -0.380 6.380 13 N -0.343 5.343 14 C 0.306 3.694 15 O -0.329 6.329 16 N -0.372 5.372 17 C 0.322 3.678 18 O -0.400 6.400 19 C -0.302 4.302 20 S 0.165 5.835 21 C -0.682 4.682 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.504 5.504 25 Si 0.744 3.256 26 H -0.200 1.200 27 H -0.209 1.209 28 H -0.200 1.200 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.053 0.947 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.116 0.884 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.253 0.747 42 H 0.234 0.766 43 H 0.105 0.895 44 H 0.108 0.892 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.361 -6.057 -27.957 28.703 hybrid contribution 1.156 -2.395 0.058 2.660 sum -1.205 -8.452 -27.899 29.176 Atomic orbital electron populations 1.22172 0.95064 1.02146 1.02838 1.20810 0.93468 0.97606 0.83798 0.89521 1.22561 0.86286 1.01721 0.97546 1.61834 1.05958 1.07819 1.47710 1.22609 1.00526 0.90127 1.00205 1.21884 0.92066 0.99496 0.90996 0.85600 1.22551 1.03835 1.00128 0.93858 1.21864 0.90884 1.02644 1.02369 1.20997 0.91893 0.74512 0.81337 1.90807 1.55873 1.43544 1.47761 1.44960 1.15136 1.65060 1.09191 1.20776 0.88888 0.75485 0.84284 1.90872 1.76559 1.43941 1.21545 1.45795 1.68670 1.13970 1.08729 1.20217 0.76599 0.87115 0.83837 1.90680 1.48916 1.15822 1.84625 1.23508 1.03749 1.04640 0.98344 1.85323 1.86163 1.13232 0.98825 1.22838 1.50794 0.98158 0.96363 0.91036 1.24980 0.95174 0.95521 0.97935 1.70009 1.45702 1.13226 1.21509 0.86242 0.79352 0.80033 0.79972 1.19953 1.20871 1.19981 0.92460 0.91232 0.92051 0.92636 0.89792 0.94734 0.89809 0.91175 0.89563 0.88429 0.86860 0.86686 0.74698 0.76631 0.89522 0.89173 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.48 37.16 0.35 -1.15 16 2 C 0.15 1.51 2.51 -67.93 -0.17 1.34 16 3 H 0.09 1.08 6.33 -51.93 -0.33 0.75 16 4 C 0.05 0.28 3.96 -3.82 -0.02 0.27 16 5 N -0.51 -3.91 4.08 -236.20 -0.96 -4.87 16 6 C 0.01 0.11 8.61 60.07 0.52 0.63 16 7 C 0.07 0.36 2.41 -68.79 -0.17 0.20 16 8 H 0.13 0.43 7.88 -51.93 -0.41 0.03 16 9 C -0.16 -0.45 4.67 -26.48 -0.12 -0.57 16 10 C -0.14 -0.36 6.07 -27.80 -0.17 -0.53 16 11 C 0.52 3.40 7.74 -11.33 -0.09 3.31 16 12 O -0.51 -5.18 17.88 5.60 0.10 -5.08 16 13 N -0.68 -4.65 5.09 -11.75 -0.06 -4.71 16 14 C 0.52 4.27 6.51 -11.32 -0.07 4.20 16 15 O -0.46 -5.95 16.93 5.60 0.09 -5.85 16 16 N -0.72 -9.30 4.80 -53.80 -0.26 -9.56 16 17 C 0.54 10.00 7.81 -10.99 -0.09 9.91 16 18 O -0.53 -11.76 15.52 5.55 0.09 -11.67 16 19 C -0.15 -3.16 6.16 36.00 0.22 -2.94 16 20 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 21 C -0.53 -15.54 9.50 30.94 0.29 -15.24 16 22 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 23 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 24 N -0.87 -26.63 13.22 55.49 0.73 -25.90 16 25 Si 0.92 21.86 29.55 -169.99 -5.02 16.84 16 26 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.24 7.41 -51.93 -0.38 -0.15 16 33 H 0.08 0.36 7.82 -51.93 -0.41 -0.04 16 34 H 0.03 0.20 6.13 -51.93 -0.32 -0.11 16 35 H 0.08 0.87 6.67 -51.93 -0.35 0.53 16 36 H 0.07 0.70 6.93 -51.93 -0.36 0.34 16 37 H 0.09 0.30 6.10 -51.93 -0.32 -0.02 16 38 H 0.10 0.10 7.29 -51.93 -0.38 -0.28 16 39 H 0.11 0.09 8.14 -51.93 -0.42 -0.33 16 40 H 0.11 0.22 8.14 -51.93 -0.42 -0.21 16 41 H 0.41 2.83 8.79 -40.82 -0.36 2.47 16 42 H 0.40 4.40 8.60 -40.82 -0.35 4.05 16 43 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 44 H 0.09 1.82 8.14 -51.92 -0.42 1.40 16 45 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 382.96 15.07 5.77 5.77 Total: -1.00 -38.89 382.96 -7.79 -46.68 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.46 Total: 0.86 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 0.40 Total: 1.43 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: -0.55 Total: -45.04 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: 0.28 Total: -22.61 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -38.89 -7.79 -46.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716017565.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.373 kcal (2) G-P(sol) polarization free energy of solvation -38.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds