Wall clock time and date at job start Wed Apr 1 2020 01:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47177 * 2 1 4 4 C 1.53007 * 109.47028 * 239.99859 * 2 1 3 5 5 N 1.46896 * 109.47124 * 185.00066 * 4 2 1 6 6 C 1.46901 * 111.00086 * 287.99844 * 5 4 2 7 7 C 1.46899 * 110.99929 * 164.04469 * 5 4 2 8 8 H 1.08995 * 109.57406 * 309.54650 * 7 5 4 9 9 C 1.53241 * 109.52091 * 69.70999 * 7 5 4 10 10 C 1.53251 * 108.56447 * 175.52273 * 9 7 5 11 11 C 1.50594 * 109.15649 * 304.37973 * 10 9 7 12 12 O 1.21230 * 119.35310 * 209.09677 * 11 10 9 13 13 N 1.34131 * 121.28053 * 29.11987 * 11 10 9 14 14 C 1.34139 * 122.59162 * 359.43149 * 13 11 10 15 15 O 1.21230 * 119.36462 * 180.54348 * 14 13 11 16 16 N 1.46497 * 109.47007 * 119.99844 * 2 1 3 17 17 C 1.34779 * 120.00244 * 274.99599 * 16 2 1 18 18 O 1.21284 * 119.99696 * 0.02562 * 17 16 2 19 19 C 1.50692 * 120.00239 * 180.02562 * 17 16 2 20 20 S 1.80996 * 109.47122 * 180.02562 * 19 17 16 21 21 C 1.76206 * 100.00027 * 180.02562 * 20 19 17 22 22 H 1.07997 * 119.99713 * 359.97438 * 21 20 19 23 23 C 1.38797 * 120.00061 * 180.02562 * 21 20 19 24 24 N 1.31629 * 120.00254 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00031 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47403 * 59.99466 * 25 23 21 27 27 H 1.48500 * 109.47465 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47253 * 299.99696 * 25 23 21 29 29 H 1.08996 * 109.46750 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46527 * 300.00248 * 1 2 3 31 31 H 1.09002 * 109.46719 * 59.99739 * 1 2 3 32 32 H 1.09000 * 109.46755 * 65.00141 * 4 2 1 33 33 H 1.09002 * 109.46875 * 305.00252 * 4 2 1 34 34 H 1.09005 * 109.47076 * 296.05133 * 6 5 4 35 35 H 1.09005 * 109.47069 * 56.04484 * 6 5 4 36 36 H 1.08990 * 109.47677 * 176.04562 * 6 5 4 37 37 H 1.08990 * 109.62554 * 55.79245 * 9 7 5 38 38 H 1.09000 * 109.61875 * 295.23671 * 9 7 5 39 39 H 1.08991 * 109.52470 * 64.28517 * 10 9 7 40 40 H 1.09000 * 109.52184 * 184.47897 * 10 9 7 41 41 H 0.97001 * 118.70803 * 179.45081 * 13 11 10 42 42 H 0.97003 * 119.99499 * 95.00318 * 16 2 1 43 43 H 1.09009 * 109.46973 * 300.00389 * 19 17 16 44 44 H 1.08996 * 109.47339 * 59.99837 * 19 17 16 45 45 H 0.96997 * 120.00584 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5040 -0.8268 -1.1905 6 6 4.1354 0.4808 -1.4133 7 6 3.9993 -1.8211 -2.1517 8 1 3.4461 -2.7525 -2.0312 9 6 3.8095 -1.2935 -3.5778 10 6 4.4336 -2.2950 -4.5556 11 6 5.8749 -2.5187 -4.1810 12 8 6.6748 -2.8108 -5.0439 13 7 6.2908 -2.4016 -2.9112 14 6 5.4641 -2.0711 -1.9078 15 8 5.9047 -1.9718 -0.7828 16 7 2.0183 -0.6906 1.1962 17 6 2.1471 -0.0182 2.3571 18 8 1.8583 1.1585 2.4117 19 6 2.6500 -0.7284 3.5874 20 16 2.7101 0.4345 4.9731 21 6 3.3148 -0.6304 6.2401 22 1 3.5247 -1.6666 6.0200 23 6 3.5202 -0.1376 7.5213 24 7 3.2639 1.1252 7.7898 25 14 4.1606 -1.2666 8.8647 26 1 5.4877 -1.8033 8.4695 27 1 4.2931 -0.5033 10.1315 28 1 3.2105 -2.3910 9.0609 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.7517 -0.1583 -2.1370 33 1 1.6054 -1.7199 -1.2952 34 1 3.9087 0.8266 -2.4219 35 1 3.7509 1.1982 -0.6883 36 1 5.2149 0.3880 -1.2951 37 1 4.3028 -0.3269 -3.6792 38 1 2.7456 -1.1886 -3.7907 39 1 3.8929 -3.2399 -4.5039 40 1 4.3781 -1.8974 -5.5691 41 1 7.2262 -2.5618 -2.7105 42 1 2.2491 -1.6317 1.1525 43 1 1.9777 -1.5508 3.8325 44 1 3.6492 -1.1203 3.3979 45 1 3.4078 1.4697 8.6851 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716017565.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:32 Heat of formation + Delta-G solvation = -131.184255 kcal Electronic energy + Delta-G solvation = -27915.313997 eV Core-core repulsion = 23865.012454 eV Total energy + Delta-G solvation = -4050.301542 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.60259 -40.72445 -40.04516 -38.77833 -36.58064 -35.80474 -34.57994 -33.62426 -32.45271 -29.93494 -29.13123 -28.13058 -27.64682 -25.49699 -24.64404 -23.43268 -22.13822 -21.27727 -19.92489 -19.80443 -18.76502 -18.27710 -17.83597 -17.51641 -17.21318 -16.87486 -16.56549 -16.21452 -16.09412 -15.79583 -15.72146 -15.56545 -15.20604 -14.93157 -14.62406 -14.52791 -14.11013 -13.86467 -13.77193 -13.32011 -13.19098 -13.15340 -12.92854 -12.89906 -12.86416 -12.66989 -12.59000 -12.47097 -12.12785 -11.75425 -11.67936 -11.34609 -11.30687 -11.19274 -11.12644 -10.80632 -10.26557 -9.92098 -9.27331 -8.64544 -8.33921 -6.11337 0.49252 1.28684 1.43323 1.47304 1.58842 1.67525 1.75970 1.81754 2.27946 2.43688 2.73498 2.99564 3.00744 3.35715 3.54111 3.65983 3.87185 3.89913 4.09603 4.14992 4.19750 4.27819 4.33527 4.43596 4.48002 4.55057 4.57125 4.65872 4.74922 4.81974 4.86708 4.88539 5.01140 5.04030 5.11153 5.16528 5.38111 5.41654 5.66646 5.73343 5.96137 6.02454 6.20148 6.40856 6.69000 6.82936 7.06946 7.42017 8.75143 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.014913 B = 0.002418 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.125223 B =11575.032293 C =12973.064515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.142 3.858 3 H 0.058 0.942 4 C 0.056 3.944 5 N -0.536 5.536 6 C 0.019 3.981 7 C 0.072 3.928 8 H 0.158 0.842 9 C -0.154 4.154 10 C -0.127 4.127 11 C 0.524 3.476 12 O -0.549 6.549 13 N -0.677 5.677 14 C 0.523 3.477 15 O -0.520 6.520 16 N -0.692 5.692 17 C 0.536 3.464 18 O -0.571 6.571 19 C -0.128 4.128 20 S -0.150 6.150 21 C -0.547 4.547 22 H 0.079 0.921 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.998 3.002 26 H -0.265 1.265 27 H -0.277 1.277 28 H -0.260 1.260 29 H 0.078 0.922 30 H 0.027 0.973 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.044 0.956 37 H 0.077 0.923 38 H 0.133 0.867 39 H 0.144 0.856 40 H 0.130 0.870 41 H 0.407 0.593 42 H 0.413 0.587 43 H 0.106 0.894 44 H 0.097 0.903 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.034 -10.662 -31.354 33.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.037 3.963 3 H 0.076 0.924 4 C -0.071 4.071 5 N -0.259 5.259 6 C -0.129 4.129 7 C -0.039 4.039 8 H 0.175 0.825 9 C -0.192 4.192 10 C -0.167 4.167 11 C 0.316 3.684 12 O -0.425 6.425 13 N -0.342 5.342 14 C 0.312 3.688 15 O -0.391 6.391 16 N -0.344 5.344 17 C 0.321 3.679 18 O -0.450 6.450 19 C -0.280 4.280 20 S 0.077 5.923 21 C -0.695 4.695 22 H 0.097 0.903 23 C -0.192 4.192 24 N -0.547 5.547 25 Si 0.819 3.181 26 H -0.189 1.189 27 H -0.202 1.202 28 H -0.185 1.185 29 H 0.097 0.903 30 H 0.046 0.954 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.136 0.864 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.095 0.905 38 H 0.151 0.849 39 H 0.162 0.838 40 H 0.148 0.852 41 H 0.246 0.754 42 H 0.250 0.750 43 H 0.124 0.876 44 H 0.115 0.885 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.985 -8.790 -30.580 32.067 hybrid contribution 1.677 -1.579 0.706 2.409 sum -2.308 -10.369 -29.874 31.706 Atomic orbital electron populations 1.22102 0.93880 1.03301 1.02231 1.21108 0.94354 0.96664 0.84150 0.92389 1.22562 0.85099 1.03480 0.95928 1.61662 1.06989 1.07577 1.49677 1.22451 0.98883 0.90497 1.01044 1.22031 0.89617 1.00180 0.92088 0.82475 1.22535 1.05867 0.99345 0.91491 1.21969 0.87597 1.04222 1.02865 1.21874 0.93433 0.72868 0.80238 1.90796 1.57476 1.45630 1.48628 1.45085 1.15006 1.64453 1.09643 1.21497 0.90280 0.73692 0.83376 1.90852 1.77782 1.46706 1.23800 1.45606 1.66544 1.14373 1.07889 1.19875 0.76733 0.86503 0.84785 1.90665 1.51349 1.17652 1.85366 1.23354 1.04878 1.03155 0.96587 1.85468 1.86512 1.17583 1.02714 1.23168 1.50992 0.98413 0.96932 0.90253 1.26128 0.95089 0.97254 1.00716 1.70175 1.46834 1.15456 1.22284 0.85015 0.79010 0.77817 0.76214 1.18944 1.20187 1.18488 0.90322 0.95370 0.89181 0.89297 0.86440 0.91726 0.92648 0.93730 0.90451 0.84862 0.83819 0.85230 0.75440 0.75049 0.87584 0.88477 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 9.48 71.98 0.68 -1.80 16 2 C 0.14 2.58 2.51 45.00 0.11 2.70 16 3 H 0.06 1.44 6.33 -2.39 -0.02 1.42 16 4 C 0.06 0.42 3.96 86.31 0.34 0.76 16 5 N -0.54 -6.71 4.08 -901.19 -3.67 -10.39 16 6 C 0.02 0.31 8.61 127.69 1.10 1.41 16 7 C 0.07 0.50 2.41 44.22 0.11 0.61 16 8 H 0.16 0.17 7.88 -2.39 -0.02 0.15 16 9 C -0.15 -0.06 4.67 30.76 0.14 0.09 16 10 C -0.13 -0.10 6.07 29.90 0.18 0.08 16 11 C 0.52 5.86 7.74 87.72 0.68 6.54 16 12 O -0.55 -10.84 17.88 -2.87 -0.05 -10.89 16 13 N -0.68 -8.93 5.09 -428.63 -2.18 -11.11 16 14 C 0.52 8.06 6.51 87.72 0.57 8.63 16 15 O -0.52 -13.74 16.93 -2.87 -0.05 -13.78 16 16 N -0.69 -17.05 4.80 -442.52 -2.12 -19.18 16 17 C 0.54 20.32 7.81 87.65 0.68 21.00 16 18 O -0.57 -26.80 15.52 -3.04 -0.05 -26.84 16 19 C -0.13 -5.43 6.16 71.23 0.44 -4.99 16 20 S -0.15 -8.65 20.57 -56.49 -1.16 -9.81 16 21 C -0.55 -32.46 9.50 67.95 0.65 -31.81 16 22 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 23 C 0.01 0.75 5.49 84.86 0.47 1.22 16 24 N -0.91 -57.33 13.22 21.65 0.29 -57.05 16 25 Si 1.00 44.96 29.55 68.60 2.03 46.99 16 26 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 27 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 28 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 29 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.09 0.18 7.41 -2.39 -0.02 0.16 16 33 H 0.12 0.20 7.82 -2.39 -0.02 0.18 16 34 H 0.06 0.60 6.13 -2.38 -0.01 0.59 16 35 H 0.05 1.20 6.67 -2.38 -0.02 1.18 16 36 H 0.04 0.93 6.93 -2.39 -0.02 0.91 16 37 H 0.08 0.23 6.10 -2.39 -0.01 0.21 16 38 H 0.13 -0.74 7.29 -2.39 -0.02 -0.75 16 39 H 0.14 -0.64 8.14 -2.39 -0.02 -0.66 16 40 H 0.13 -0.13 8.14 -2.39 -0.02 -0.15 16 41 H 0.41 5.93 8.79 -92.71 -0.81 5.12 16 42 H 0.41 8.06 8.60 -92.71 -0.80 7.27 16 43 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 44 H 0.10 3.94 8.14 -2.40 -0.02 3.92 16 45 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -93.21 382.96 -1.39 -94.61 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -0.57 Total: 13.04 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 6.15 Total: 4.42 kcal Atomic # 7 Polarization: -90.03 SS G_CDS: -7.70 Total: -97.73 kcal Atomic # 8 Polarization: -51.37 SS G_CDS: -0.15 Total: -51.52 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.16 Total: -9.81 kcal Total: -93.21 -1.39 -94.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716017565.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.575 kcal (2) G-P(sol) polarization free energy of solvation -93.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds