Wall clock time and date at job start Wed Apr 1 2020 02:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35708 * 116.99810 * 2 1 4 4 C 1.41931 * 126.87874 * 179.97438 * 3 2 1 5 5 C 1.35278 * 103.96053 * 180.02562 * 4 3 2 6 6 C 1.50694 * 126.70902 * 180.02562 * 5 4 3 7 7 N 1.46898 * 109.47228 * 90.00141 * 6 5 4 8 8 C 1.46901 * 110.99846 * 293.95436 * 7 6 5 9 9 C 1.46899 * 110.99963 * 170.00082 * 7 6 5 10 10 H 1.09001 * 109.47103 * 56.06603 * 9 7 6 11 11 C 1.53000 * 109.47233 * 296.06734 * 9 7 6 12 12 C 1.52998 * 109.46945 * 176.06736 * 9 7 6 13 13 N 1.46505 * 109.47160 * 54.45378 * 12 9 7 14 14 C 1.34777 * 119.99666 * 183.28674 * 13 12 9 15 15 O 1.21281 * 120.00334 * 359.97438 * 14 13 12 16 16 C 1.50705 * 119.99548 * 179.97438 * 14 13 12 17 17 S 1.80998 * 109.46975 * 180.02562 * 16 14 13 18 18 C 1.76197 * 99.99983 * 180.02562 * 17 16 14 19 19 H 1.08008 * 119.99790 * 359.97438 * 18 17 16 20 20 C 1.38795 * 120.00310 * 179.97438 * 18 17 16 21 21 N 1.31631 * 119.99574 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00219 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46841 * 90.00383 * 22 20 18 24 24 H 1.48502 * 109.47248 * 210.00220 * 22 20 18 25 25 H 1.48498 * 109.47254 * 330.00474 * 22 20 18 26 26 O 1.34078 * 106.57982 * 0.26594 * 5 4 3 27 27 N 1.20916 * 111.72225 * 359.52635 * 26 5 4 28 28 H 1.09006 * 109.46903 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47115 * 299.99697 * 1 2 3 30 30 H 1.09002 * 109.47079 * 59.99848 * 1 2 3 31 31 H 1.07995 * 128.01975 * 0.02562 * 4 3 2 32 32 H 1.09007 * 109.46902 * 329.99949 * 6 5 4 33 33 H 1.08994 * 109.47199 * 210.00757 * 6 5 4 34 34 H 1.08998 * 109.47078 * 290.56328 * 8 7 6 35 35 H 1.08995 * 109.47194 * 50.56646 * 8 7 6 36 36 H 1.09001 * 109.46988 * 170.56522 * 8 7 6 37 37 H 1.08998 * 109.46734 * 60.00293 * 11 9 7 38 38 H 1.09001 * 109.47511 * 179.97438 * 11 9 7 39 39 H 1.08996 * 109.46981 * 300.00420 * 11 9 7 40 40 H 1.09007 * 109.47182 * 174.44865 * 12 9 7 41 41 H 1.08999 * 109.47508 * 294.44496 * 12 9 7 42 42 H 0.96993 * 119.99678 * 3.28302 * 13 12 9 43 43 H 1.09002 * 109.47054 * 300.00138 * 16 14 13 44 44 H 1.08995 * 109.47069 * 59.99898 * 16 14 13 45 45 H 0.97008 * 119.99651 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4434 1.4527 0.0005 5 6 3.5396 2.8021 0.0009 6 6 4.8088 3.6146 0.0009 7 7 5.2210 3.8791 -1.3840 8 6 5.6023 2.6353 -2.0663 9 6 6.3127 4.8608 -1.4300 10 1 7.1443 4.5083 -0.8198 11 6 5.8154 6.2024 -0.8880 12 6 6.7799 5.0366 -2.8762 13 7 5.6339 5.3822 -3.7210 14 6 5.7954 5.5210 -5.0519 15 8 6.8895 5.3603 -5.5501 16 6 4.6165 5.8759 -5.9210 17 16 5.1511 5.9881 -7.6465 18 6 3.6206 6.4032 -8.4146 19 1 2.7277 6.5100 -7.8164 20 6 3.5625 6.5930 -9.7883 21 7 4.6507 6.4624 -10.5173 22 14 1.9398 7.0324 -10.6027 23 1 1.7899 8.5093 -10.6424 24 1 1.9193 6.4954 -11.9870 25 1 0.8203 6.4420 -9.8260 26 8 2.2851 3.2751 0.0065 27 7 1.4700 2.3820 0.0003 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 4.2447 0.7287 0.0006 32 1 5.5947 3.0608 0.5146 33 1 4.6350 4.5598 0.5151 34 1 6.5330 2.2587 -1.6419 35 1 4.8158 1.8924 -1.9340 36 1 5.7412 2.8320 -3.1294 37 1 5.4826 6.0771 0.1423 38 1 6.6256 6.9308 -0.9217 39 1 4.9838 6.5549 -1.4981 40 1 7.5205 5.8350 -2.9244 41 1 7.2249 4.1066 -3.2300 42 1 4.7591 5.5110 -3.3225 43 1 3.8511 5.1054 -5.8274 44 1 4.2071 6.8350 -5.6039 45 1 4.6100 6.5947 -11.4775 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717462432.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:33 Heat of formation + Delta-G solvation = 5.812949 kcal Electronic energy + Delta-G solvation = -27327.427471 eV Core-core repulsion = 23283.066573 eV Total energy + Delta-G solvation = -4044.360898 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.20117 -39.70121 -39.14698 -38.30178 -34.84208 -33.39210 -32.41176 -32.37292 -31.14429 -29.50051 -28.29489 -27.71882 -25.83708 -25.36254 -24.56535 -23.70867 -21.49764 -20.69618 -20.01484 -18.27218 -18.07785 -17.77131 -17.08136 -16.67178 -16.32403 -15.85686 -15.74135 -15.59043 -15.18893 -14.90297 -14.76716 -14.71218 -14.11967 -14.01707 -13.72578 -13.30255 -13.08354 -12.96584 -12.66336 -12.53969 -12.51648 -12.22823 -12.16229 -11.89145 -11.70589 -11.58217 -11.41470 -11.06992 -11.02980 -10.98070 -10.72237 -9.96175 -9.77254 -9.55159 -9.34150 -9.03144 -8.84551 -8.76584 -8.18601 -6.45189 -6.17985 -3.87788 1.03581 1.93235 2.42094 2.73681 3.09820 3.18653 3.25244 3.30728 3.35069 3.48812 3.85135 3.89174 4.24520 4.32666 4.41414 4.55096 4.62678 4.68148 4.76262 4.78837 4.85433 4.93489 5.10096 5.11866 5.17194 5.18133 5.24491 5.25665 5.40103 5.44004 5.53747 5.56333 5.60938 5.75163 5.85894 5.94173 5.97705 6.22653 6.46995 6.52344 6.63068 6.76370 7.63751 7.86181 7.93484 8.39403 8.71575 9.27559 10.89451 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010041 B = 0.002462 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2787.982155 B =11371.039280 C =13391.219820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.285 6.285 3 C 0.207 3.793 4 C -0.231 4.231 5 C 0.010 3.990 6 C 0.127 3.873 7 N -0.532 5.532 8 C 0.011 3.989 9 C 0.072 3.928 10 H 0.061 0.939 11 C -0.151 4.151 12 C 0.127 3.873 13 N -0.727 5.727 14 C 0.531 3.469 15 O -0.524 6.524 16 C -0.152 4.152 17 S -0.062 6.062 18 C -0.534 4.534 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 O 0.111 5.889 27 N -0.407 5.407 28 H 0.105 0.895 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.176 0.824 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.032 0.968 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.405 0.595 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.351 -8.942 28.281 29.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.192 6.192 3 C 0.010 3.990 4 C -0.253 4.253 5 C -0.054 4.054 6 C -0.001 4.001 7 N -0.258 5.258 8 C -0.137 4.137 9 C -0.036 4.036 10 H 0.079 0.921 11 C -0.208 4.208 12 C 0.002 3.998 13 N -0.382 5.382 14 C 0.317 3.683 15 O -0.399 6.399 16 C -0.303 4.303 17 S 0.165 5.835 18 C -0.682 4.682 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.504 5.504 22 Si 0.744 3.256 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 O 0.050 5.950 27 N -0.132 5.132 28 H 0.124 0.876 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.193 0.807 32 H 0.092 0.908 33 H 0.125 0.875 34 H 0.050 0.950 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.241 0.759 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.004 -8.897 27.022 28.467 hybrid contribution -1.690 -0.408 0.612 1.843 sum -2.693 -9.306 27.634 29.283 Atomic orbital electron populations 1.23076 0.76718 1.04120 1.02435 1.86186 1.22678 1.20935 1.89382 1.21993 0.90869 0.85753 1.00433 1.21785 0.94360 0.95667 1.13511 1.24055 0.88326 0.92736 1.00331 1.20586 0.88541 0.99610 0.91403 1.61928 1.38561 1.11729 1.13573 1.22622 0.99576 0.90806 1.00661 1.21979 0.92041 0.93025 0.96588 0.92138 1.21940 1.02494 0.95382 1.00994 1.21321 0.89364 1.01314 0.87776 1.45877 1.12311 1.73280 1.06771 1.20289 0.90216 0.76043 0.81763 1.90695 1.26801 1.48991 1.73374 1.23511 0.99162 1.04260 1.03324 1.85354 1.14989 1.91603 0.91580 1.22875 0.95336 1.54910 0.95067 0.90956 1.24987 0.97519 0.94883 0.96228 1.70026 1.27485 1.46390 1.06486 0.86177 0.82221 0.78696 0.78467 1.20286 1.20795 1.19690 1.84822 1.12072 1.29842 1.68267 1.74172 1.15645 0.96721 1.26689 0.87647 0.92298 0.92080 0.80674 0.90825 0.87466 0.94960 0.90972 0.89868 0.92214 0.91418 0.91134 0.90999 0.91407 0.75939 0.89323 0.89323 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.73 101.05 1.08 1.32 16 2 O -0.29 -2.93 10.57 -18.83 -0.20 -3.13 16 3 C 0.21 2.25 8.01 -16.65 -0.13 2.11 16 4 C -0.23 -1.96 9.54 -39.22 -0.37 -2.34 16 5 C 0.01 0.08 6.37 -35.37 -0.23 -0.14 16 6 C 0.13 0.71 5.38 -4.98 -0.03 0.69 16 7 N -0.53 -3.91 4.08 -236.34 -0.96 -4.87 16 8 C 0.01 0.09 8.68 60.07 0.52 0.61 16 9 C 0.07 0.49 2.33 -67.71 -0.16 0.33 16 10 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 11 C -0.15 -0.92 8.97 37.16 0.33 -0.58 16 12 C 0.13 1.33 4.53 -4.04 -0.02 1.31 16 13 N -0.73 -9.45 4.88 -60.29 -0.29 -9.75 16 14 C 0.53 9.84 7.85 -10.98 -0.09 9.75 16 15 O -0.52 -11.79 15.86 5.56 0.09 -11.70 16 16 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 17 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 18 C -0.53 -15.40 9.50 30.94 0.29 -15.11 16 19 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.44 13.22 55.49 0.73 -25.70 16 22 Si 0.92 21.70 29.55 -169.99 -5.02 16.67 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 26 O 0.11 1.18 11.19 17.08 0.19 1.37 16 27 N -0.41 -4.79 11.54 30.38 0.35 -4.44 16 28 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.18 1.10 8.06 -52.49 -0.42 0.67 16 32 H 0.07 0.29 8.12 -51.92 -0.42 -0.14 16 33 H 0.11 0.47 5.99 -51.93 -0.31 0.16 16 34 H 0.03 0.22 8.13 -51.93 -0.42 -0.21 16 35 H 0.07 0.60 5.85 -51.93 -0.30 0.30 16 36 H 0.08 0.87 6.47 -51.93 -0.34 0.53 16 37 H 0.06 0.27 6.30 -51.93 -0.33 -0.06 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.52 7.15 -51.93 -0.37 0.15 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.78 6.79 -51.93 -0.35 0.42 16 42 H 0.41 4.62 7.29 -40.82 -0.30 4.32 16 43 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 44 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 45 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 387.72 15.07 5.84 5.84 Total: -1.00 -36.07 387.72 -6.64 -42.71 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -6.49 Total: -0.15 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: 1.34 Total: -2.94 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: -0.17 Total: -44.77 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.08 Total: -13.46 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.07 -6.64 -42.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717462432.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.521 kcal (2) G-P(sol) polarization free energy of solvation -36.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds