Wall clock time and date at job start Wed Apr 1 2020 02:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35708 * 116.99810 * 2 1 4 4 C 1.41931 * 126.87874 * 179.97438 * 3 2 1 5 5 C 1.35278 * 103.96053 * 180.02562 * 4 3 2 6 6 C 1.50694 * 126.70902 * 180.02562 * 5 4 3 7 7 N 1.46898 * 109.47228 * 90.00141 * 6 5 4 8 8 C 1.46901 * 110.99846 * 293.95436 * 7 6 5 9 9 C 1.46899 * 110.99963 * 170.00082 * 7 6 5 10 10 H 1.09001 * 109.47103 * 56.06603 * 9 7 6 11 11 C 1.53000 * 109.47233 * 296.06734 * 9 7 6 12 12 C 1.52998 * 109.46945 * 176.06736 * 9 7 6 13 13 N 1.46505 * 109.47160 * 54.45378 * 12 9 7 14 14 C 1.34777 * 119.99666 * 183.28674 * 13 12 9 15 15 O 1.21281 * 120.00334 * 359.97438 * 14 13 12 16 16 C 1.50705 * 119.99548 * 179.97438 * 14 13 12 17 17 S 1.80998 * 109.46975 * 180.02562 * 16 14 13 18 18 C 1.76197 * 99.99983 * 180.02562 * 17 16 14 19 19 H 1.08008 * 119.99790 * 359.97438 * 18 17 16 20 20 C 1.38795 * 120.00310 * 179.97438 * 18 17 16 21 21 N 1.31631 * 119.99574 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00219 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46841 * 90.00383 * 22 20 18 24 24 H 1.48502 * 109.47248 * 210.00220 * 22 20 18 25 25 H 1.48498 * 109.47254 * 330.00474 * 22 20 18 26 26 O 1.34078 * 106.57982 * 0.26594 * 5 4 3 27 27 N 1.20916 * 111.72225 * 359.52635 * 26 5 4 28 28 H 1.09006 * 109.46903 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47115 * 299.99697 * 1 2 3 30 30 H 1.09002 * 109.47079 * 59.99848 * 1 2 3 31 31 H 1.07995 * 128.01975 * 0.02562 * 4 3 2 32 32 H 1.09007 * 109.46902 * 329.99949 * 6 5 4 33 33 H 1.08994 * 109.47199 * 210.00757 * 6 5 4 34 34 H 1.08998 * 109.47078 * 290.56328 * 8 7 6 35 35 H 1.08995 * 109.47194 * 50.56646 * 8 7 6 36 36 H 1.09001 * 109.46988 * 170.56522 * 8 7 6 37 37 H 1.08998 * 109.46734 * 60.00293 * 11 9 7 38 38 H 1.09001 * 109.47511 * 179.97438 * 11 9 7 39 39 H 1.08996 * 109.46981 * 300.00420 * 11 9 7 40 40 H 1.09007 * 109.47182 * 174.44865 * 12 9 7 41 41 H 1.08999 * 109.47508 * 294.44496 * 12 9 7 42 42 H 0.96993 * 119.99678 * 3.28302 * 13 12 9 43 43 H 1.09002 * 109.47054 * 300.00138 * 16 14 13 44 44 H 1.08995 * 109.47069 * 59.99898 * 16 14 13 45 45 H 0.97008 * 119.99651 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4434 1.4527 0.0005 5 6 3.5396 2.8021 0.0009 6 6 4.8088 3.6146 0.0009 7 7 5.2210 3.8791 -1.3840 8 6 5.6023 2.6353 -2.0663 9 6 6.3127 4.8608 -1.4300 10 1 7.1443 4.5083 -0.8198 11 6 5.8154 6.2024 -0.8880 12 6 6.7799 5.0366 -2.8762 13 7 5.6339 5.3822 -3.7210 14 6 5.7954 5.5210 -5.0519 15 8 6.8895 5.3603 -5.5501 16 6 4.6165 5.8759 -5.9210 17 16 5.1511 5.9881 -7.6465 18 6 3.6206 6.4032 -8.4146 19 1 2.7277 6.5100 -7.8164 20 6 3.5625 6.5930 -9.7883 21 7 4.6507 6.4624 -10.5173 22 14 1.9398 7.0324 -10.6027 23 1 1.7899 8.5093 -10.6424 24 1 1.9193 6.4954 -11.9870 25 1 0.8203 6.4420 -9.8260 26 8 2.2851 3.2751 0.0065 27 7 1.4700 2.3820 0.0003 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 4.2447 0.7287 0.0006 32 1 5.5947 3.0608 0.5146 33 1 4.6350 4.5598 0.5151 34 1 6.5330 2.2587 -1.6419 35 1 4.8158 1.8924 -1.9340 36 1 5.7412 2.8320 -3.1294 37 1 5.4826 6.0771 0.1423 38 1 6.6256 6.9308 -0.9217 39 1 4.9838 6.5549 -1.4981 40 1 7.5205 5.8350 -2.9244 41 1 7.2249 4.1066 -3.2300 42 1 4.7591 5.5110 -3.3225 43 1 3.8511 5.1054 -5.8274 44 1 4.2071 6.8350 -5.6039 45 1 4.6100 6.5947 -11.4775 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717462432.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:32 Heat of formation + Delta-G solvation = -22.779000 kcal Electronic energy + Delta-G solvation = -27328.667311 eV Core-core repulsion = 23283.066573 eV Total energy + Delta-G solvation = -4045.600738 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.93414 -40.79944 -39.85202 -39.28864 -35.81038 -34.58182 -34.19510 -33.25610 -31.90912 -30.78118 -29.03491 -28.39561 -27.67255 -26.49797 -25.20808 -24.43145 -22.18241 -21.90656 -20.86582 -19.83736 -18.92466 -18.78199 -17.84314 -17.77239 -17.41305 -16.88607 -16.85843 -16.49632 -16.33446 -16.18966 -15.92509 -15.60782 -15.47854 -14.77602 -14.65701 -14.55948 -14.31780 -14.00421 -13.81583 -13.29825 -13.19215 -13.15868 -13.08947 -12.88762 -12.86754 -12.76095 -12.61550 -12.30237 -12.27708 -12.10522 -11.76355 -11.64364 -11.13974 -10.90694 -10.60263 -10.29893 -10.26929 -9.98569 -9.37113 -8.65217 -8.34372 -6.11799 0.38122 1.20874 1.28398 1.42083 1.47582 1.58859 1.68866 1.77188 2.16203 2.27298 2.39374 2.93961 2.99514 3.20214 3.34973 3.71128 3.81453 3.92475 4.03553 4.10000 4.11992 4.20250 4.24384 4.31832 4.39963 4.43189 4.51788 4.53612 4.57618 4.61582 4.69476 4.77579 4.84439 4.86562 4.98085 5.10046 5.12828 5.42096 5.46409 5.52855 5.93356 5.94938 6.00722 6.20250 6.61534 7.06984 7.23233 7.33413 8.74851 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010041 B = 0.002462 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2787.982155 B =11371.039280 C =13391.219820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.298 6.298 3 C 0.189 3.811 4 C -0.233 4.233 5 C 0.017 3.983 6 C 0.130 3.870 7 N -0.546 5.546 8 C 0.015 3.985 9 C 0.084 3.916 10 H 0.089 0.911 11 C -0.150 4.150 12 C 0.122 3.878 13 N -0.699 5.699 14 C 0.533 3.467 15 O -0.569 6.569 16 C -0.129 4.129 17 S -0.148 6.148 18 C -0.547 4.547 19 H 0.080 0.920 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.260 1.260 26 O 0.097 5.903 27 N -0.433 5.433 28 H 0.133 0.867 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.197 0.803 32 H 0.103 0.897 33 H 0.125 0.875 34 H 0.050 0.950 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.416 0.584 43 H 0.101 0.899 44 H 0.106 0.894 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.152 -8.870 30.628 31.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.205 6.205 3 C -0.008 4.008 4 C -0.255 4.255 5 C -0.048 4.048 6 C 0.002 3.998 7 N -0.272 5.272 8 C -0.133 4.133 9 C -0.023 4.023 10 H 0.106 0.894 11 C -0.208 4.208 12 C -0.002 4.002 13 N -0.353 5.353 14 C 0.319 3.681 15 O -0.449 6.449 16 C -0.281 4.281 17 S 0.079 5.921 18 C -0.694 4.694 19 H 0.098 0.902 20 C -0.191 4.191 21 N -0.547 5.547 22 Si 0.819 3.181 23 H -0.192 1.192 24 H -0.202 1.202 25 H -0.184 1.184 26 O 0.038 5.962 27 N -0.161 5.161 28 H 0.151 0.849 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.214 0.786 32 H 0.120 0.880 33 H 0.143 0.857 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.254 0.746 43 H 0.120 0.880 44 H 0.124 0.876 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.820 -8.822 29.435 30.782 hybrid contribution -1.414 -0.472 0.021 1.491 sum -3.234 -9.295 29.456 31.056 Atomic orbital electron populations 1.23266 0.75547 1.05848 1.02032 1.86169 1.23989 1.20940 1.89394 1.22427 0.92015 0.85785 1.00602 1.22125 0.93888 0.96352 1.13167 1.24549 0.88212 0.92958 0.99033 1.20781 0.87781 1.00684 0.90505 1.61840 1.38903 1.11490 1.14947 1.22509 1.00370 0.91169 0.99209 1.21905 0.92864 0.93574 0.94003 0.89379 1.21956 1.02122 0.94692 1.01998 1.21555 0.88329 1.00719 0.89556 1.45641 1.13853 1.70845 1.04945 1.19951 0.88746 0.76150 0.83292 1.90681 1.28082 1.51560 1.74528 1.23358 1.00248 1.05738 0.98722 1.85490 1.16872 1.91949 0.97776 1.23197 0.95439 1.55018 0.95786 0.90204 1.26113 1.01720 0.94415 0.96871 1.70184 1.30162 1.47450 1.06916 0.84967 0.77043 0.78773 0.77278 1.19188 1.20195 1.18421 1.84773 1.13038 1.29853 1.68572 1.74152 1.16663 0.97288 1.27968 0.84893 0.92202 0.92958 0.78584 0.87962 0.85700 0.93160 0.91357 0.92721 0.89964 0.91078 0.92510 0.91153 0.92328 0.74632 0.88043 0.87557 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.73 113.37 1.22 1.61 16 2 O -0.30 -5.99 10.57 -90.29 -0.95 -6.95 16 3 C 0.19 3.99 8.01 85.79 0.69 4.67 16 4 C -0.23 -3.56 9.54 22.50 0.21 -3.34 16 5 C 0.02 0.24 6.37 25.00 0.16 0.40 16 6 C 0.13 0.97 5.38 85.56 0.46 1.43 16 7 N -0.55 -6.40 4.08 -901.64 -3.68 -10.08 16 8 C 0.02 0.22 8.68 127.69 1.11 1.33 16 9 C 0.08 0.88 2.33 44.91 0.10 0.98 16 10 H 0.09 0.54 8.14 -2.39 -0.02 0.53 16 11 C -0.15 -1.31 8.97 71.98 0.65 -0.66 16 12 C 0.12 2.36 4.53 86.38 0.39 2.75 16 13 N -0.70 -17.37 4.88 -463.04 -2.26 -19.63 16 14 C 0.53 19.76 7.85 87.66 0.69 20.45 16 15 O -0.57 -26.27 15.86 -3.03 -0.05 -26.32 16 16 C -0.13 -5.30 6.16 71.24 0.44 -4.87 16 17 S -0.15 -8.37 20.57 -56.49 -1.16 -9.53 16 18 C -0.55 -31.86 9.50 67.95 0.65 -31.22 16 19 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 20 C 0.01 0.78 5.49 84.86 0.47 1.25 16 21 N -0.91 -56.58 13.22 21.65 0.29 -56.29 16 22 Si 1.00 44.39 29.55 68.60 2.03 46.42 16 23 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 24 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 25 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 26 O 0.10 1.97 11.19 71.28 0.80 2.77 16 27 N -0.43 -10.08 11.54 -172.59 -1.99 -12.07 16 28 H 0.13 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.20 1.97 8.06 -2.91 -0.02 1.94 16 32 H 0.10 0.27 8.12 -2.38 -0.02 0.25 16 33 H 0.13 0.54 5.99 -2.39 -0.01 0.53 16 34 H 0.05 0.53 8.13 -2.39 -0.02 0.51 16 35 H 0.07 1.02 5.85 -2.39 -0.01 1.01 16 36 H 0.05 1.10 6.47 -2.39 -0.02 1.08 16 37 H 0.08 0.38 6.30 -2.39 -0.02 0.36 16 38 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.06 0.67 7.15 -2.39 -0.02 0.65 16 40 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 41 H 0.06 1.29 6.79 -2.39 -0.02 1.27 16 42 H 0.42 8.72 7.29 -92.71 -0.68 8.05 16 43 H 0.10 3.88 8.14 -2.39 -0.02 3.86 16 44 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 45 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 Total: -1.00 -81.83 387.72 0.58 -81.25 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.34 Total: 15.65 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: 7.23 Total: -5.22 kcal Atomic # 7 Polarization: -90.43 SS G_CDS: -7.65 Total: -98.07 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.20 Total: -30.50 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.53 kcal Total: -81.83 0.58 -81.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717462432.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.466 kcal (2) G-P(sol) polarization free energy of solvation -81.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds