Wall clock time and date at job start Wed Apr 1 2020 01:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46878 * 2 1 4 4 N 1.46498 * 109.46944 * 240.00360 * 2 1 3 5 5 C 1.34779 * 120.00060 * 78.37005 * 4 2 1 6 6 O 1.21285 * 120.00041 * 0.02562 * 5 4 2 7 7 C 1.50699 * 119.99902 * 179.97438 * 5 4 2 8 8 S 1.81002 * 109.46984 * 180.02562 * 7 5 4 9 9 C 1.76199 * 100.00023 * 180.02562 * 8 7 5 10 10 H 1.07999 * 120.00084 * 359.97438 * 9 8 7 11 11 C 1.38802 * 119.99916 * 179.97438 * 9 8 7 12 12 N 1.31625 * 120.00149 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99899 * 179.97438 * 11 9 8 14 14 H 1.48509 * 109.46966 * 90.00290 * 13 11 9 15 15 H 1.48498 * 109.47407 * 210.00281 * 13 11 9 16 16 H 1.48499 * 109.47098 * 330.00529 * 13 11 9 17 17 C 1.52993 * 109.47266 * 120.00311 * 2 1 3 18 18 H 1.09000 * 109.70273 * 72.89925 * 17 2 1 19 19 C 1.53187 * 109.58902 * 312.54610 * 17 2 1 20 20 C 1.53039 * 109.31552 * 185.57817 * 19 17 2 21 21 C 1.53038 * 109.53910 * 61.36698 * 20 19 17 22 22 C 1.53631 * 109.23681 * 298.50881 * 21 20 19 23 23 N 1.46924 * 108.54007 * 54.86093 * 22 21 20 24 24 C 1.34780 * 120.62827 * 126.36783 * 23 22 21 25 25 O 1.21354 * 119.99823 * 178.34679 * 24 23 22 26 26 C 1.49445 * 120.00351 * 358.07676 * 24 23 22 27 27 N 1.34774 * 119.99932 * 186.85443 * 26 24 23 28 28 O 1.21349 * 119.99914 * 6.84855 * 26 24 23 29 29 H 1.09000 * 109.47188 * 59.99737 * 1 2 3 30 30 H 1.09000 * 109.46723 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46995 * 299.99205 * 1 2 3 32 32 H 0.97002 * 120.00259 * 258.36720 * 4 2 1 33 33 H 1.09005 * 109.47718 * 299.99862 * 7 5 4 34 34 H 1.09003 * 109.47492 * 60.00636 * 7 5 4 35 35 H 0.96996 * 120.00307 * 179.97438 * 12 11 9 36 36 H 1.09003 * 109.49594 * 305.53135 * 19 17 2 37 37 H 1.08997 * 109.50068 * 65.62295 * 19 17 2 38 38 H 1.09006 * 109.46127 * 181.38381 * 20 19 17 39 39 H 1.08994 * 109.45925 * 301.35589 * 20 19 17 40 40 H 1.08992 * 109.49941 * 58.58386 * 21 20 19 41 41 H 1.08998 * 109.50253 * 178.65323 * 21 20 19 42 42 H 1.08992 * 109.74342 * 295.11642 * 22 21 20 43 43 H 1.09009 * 109.66127 * 174.54630 * 22 21 20 44 44 H 0.96999 * 120.00013 * 359.97438 * 27 26 24 45 45 H 0.97008 * 119.99815 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.0211 -0.0573 -2.3860 6 8 1.6198 1.0844 -2.4662 7 6 2.5239 -0.7674 -3.6163 8 16 2.4012 0.3386 -5.0438 9 6 3.0355 -0.7168 -6.3041 10 1 3.3540 -1.7193 -6.0593 11 6 3.1257 -0.2599 -7.6116 12 7 2.7381 0.9621 -7.9100 13 14 3.7988 -1.3786 -8.9476 14 1 2.6843 -2.1485 -9.5565 15 1 4.4624 -0.5582 -9.9925 16 1 4.7846 -2.3185 -8.3560 17 6 2.0400 -0.7213 1.2491 18 1 1.8781 -1.7942 1.1458 19 6 1.2912 -0.2053 2.4819 20 6 1.8999 -0.8269 3.7409 21 6 3.3680 -0.4111 3.8586 22 6 4.1417 -0.9345 2.6388 23 7 3.4745 -0.4540 1.4211 24 6 4.1665 0.2142 0.4771 25 8 3.6108 0.5797 -0.5379 26 6 5.6168 0.5104 0.6829 27 7 6.2751 1.2955 -0.1926 28 8 6.2016 0.0441 1.6385 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 2.3397 -1.6035 -1.1320 33 1 3.5647 -1.0563 -3.4694 34 1 1.9211 -1.6582 -3.7937 35 1 2.8015 1.2816 -8.8237 36 1 1.3790 0.8800 2.5330 37 1 0.2395 -0.4826 2.4112 38 1 1.3530 -0.4804 4.6178 39 1 1.8342 -1.9131 3.6777 40 1 3.4363 0.6760 3.8967 41 1 3.7944 -0.8346 4.7679 42 1 4.1476 -2.0243 2.6465 43 1 5.1655 -0.5611 2.6660 44 1 5.8077 1.6680 -0.9566 45 1 7.2165 1.4880 -0.0588 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720578904.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:04 Heat of formation + Delta-G solvation = -61.261642 kcal Electronic energy + Delta-G solvation = -29185.808023 eV Core-core repulsion = 25138.538552 eV Total energy + Delta-G solvation = -4047.269470 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.47852 -39.55455 -38.35934 -37.74653 -35.07719 -34.18640 -32.95620 -32.37675 -31.94676 -29.60771 -28.15824 -26.68179 -25.43019 -24.38480 -23.91020 -21.53822 -21.14454 -20.28824 -19.59749 -18.07063 -17.59403 -17.33778 -16.48985 -16.30430 -16.04411 -15.72489 -15.50373 -15.03022 -14.76116 -14.70065 -14.34660 -14.24713 -13.90273 -13.84902 -13.59278 -13.26411 -13.07605 -12.82990 -12.73135 -12.47923 -12.05327 -11.91458 -11.66278 -11.53795 -11.24170 -11.12333 -11.02304 -10.96129 -10.90352 -10.70780 -10.27851 -10.05762 -9.73399 -9.13262 -9.01902 -9.01323 -8.90511 -8.32783 -8.12820 -6.40687 -6.16295 -3.84876 1.26347 2.22404 3.04537 3.17949 3.24754 3.31224 3.38862 3.45228 3.50935 3.89988 4.20302 4.26663 4.40892 4.53840 4.57202 4.77009 4.84259 4.94452 5.14505 5.18459 5.29668 5.38053 5.43124 5.49197 5.50305 5.56764 5.62446 5.67566 5.74021 5.77468 5.83700 5.97675 6.03763 6.07951 6.26910 6.28078 6.40467 6.53514 6.73114 6.98823 7.04477 7.63927 7.64688 7.87173 8.04788 8.40666 9.00891 9.28991 10.91036 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.016559 B = 0.002995 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.504106 B = 9346.247727 C =10363.886040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.155 3.845 3 H 0.106 0.894 4 N -0.712 5.712 5 C 0.550 3.450 6 O -0.519 6.519 7 C -0.150 4.150 8 S -0.059 6.059 9 C -0.534 4.534 10 H 0.070 0.930 11 C 0.073 3.927 12 N -0.868 5.868 13 Si 0.917 3.083 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.273 1.273 17 C 0.138 3.862 18 H 0.079 0.921 19 C -0.128 4.128 20 C -0.122 4.122 21 C -0.133 4.133 22 C 0.049 3.951 23 N -0.580 5.580 24 C 0.488 3.512 25 O -0.471 6.471 26 C 0.518 3.482 27 N -0.815 5.815 28 O -0.523 6.523 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.386 0.614 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.267 0.733 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.158 0.842 44 H 0.420 0.580 45 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.106 -4.185 25.691 26.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.050 3.950 3 H 0.123 0.877 4 N -0.365 5.365 5 C 0.336 3.664 6 O -0.394 6.394 7 C -0.301 4.301 8 S 0.168 5.832 9 C -0.683 4.683 10 H 0.088 0.912 11 C -0.136 4.136 12 N -0.504 5.504 13 Si 0.743 3.257 14 H -0.203 1.203 15 H -0.208 1.208 16 H -0.198 1.198 17 C 0.035 3.965 18 H 0.097 0.903 19 C -0.166 4.166 20 C -0.160 4.160 21 C -0.171 4.171 22 C -0.072 4.072 23 N -0.316 5.316 24 C 0.269 3.731 25 O -0.344 6.344 26 C 0.298 3.702 27 N -0.380 5.380 28 O -0.402 6.402 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.219 0.781 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.174 0.826 44 H 0.251 0.749 45 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 1.322 -2.284 25.473 25.610 hybrid contribution 1.221 -2.434 -0.964 2.889 sum 2.543 -4.718 24.509 25.088 Atomic orbital electron populations 1.22364 0.95744 1.01854 1.02959 1.20988 0.92508 0.99134 0.82370 0.87670 1.45847 1.66919 1.16274 1.07446 1.19812 0.77013 0.86351 0.83249 1.90636 1.46060 1.17400 1.85296 1.23500 1.03326 1.04334 0.98944 1.85337 1.84038 1.18221 0.95588 1.22895 1.48793 1.01706 0.94858 0.91157 1.24973 0.95219 0.95498 0.97899 1.70020 1.44752 1.15730 1.19873 0.86204 0.78991 0.79958 0.80547 1.20325 1.20800 1.19770 1.21702 0.79263 0.99927 0.95656 0.90303 1.22011 0.99786 1.01485 0.93351 1.21568 0.96042 1.00738 0.97616 1.21982 0.95434 1.01543 0.98166 1.23397 1.02228 0.99625 0.81972 1.47901 1.08936 1.54723 1.20029 1.20003 0.87398 0.81250 0.84461 1.91069 1.67910 1.48972 1.26407 1.20402 0.88716 0.78690 0.82398 1.43615 1.15016 1.50398 1.28925 1.90310 1.68761 1.51732 1.29358 0.91081 0.92862 0.91836 0.78118 0.89905 0.89994 0.92292 0.91007 0.89835 0.91559 0.91752 0.91676 0.90787 0.91786 0.82583 0.74859 0.75738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 8.64 37.16 0.32 -1.66 16 2 C 0.16 1.95 1.46 -67.93 -0.10 1.85 16 3 H 0.11 1.65 5.89 -51.93 -0.31 1.34 16 4 N -0.71 -10.37 3.41 -53.81 -0.18 -10.55 16 5 C 0.55 10.81 6.10 -10.99 -0.07 10.74 16 6 O -0.52 -12.18 14.98 -4.69 -0.07 -12.25 16 7 C -0.15 -3.21 6.16 36.01 0.22 -2.99 16 8 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 9 C -0.53 -15.53 9.50 30.94 0.29 -15.24 16 10 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 11 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 12 N -0.87 -26.49 13.22 55.49 0.73 -25.75 16 13 Si 0.92 21.71 29.55 -169.99 -5.02 16.69 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 17 C 0.14 1.28 2.64 -67.61 -0.18 1.10 16 18 H 0.08 0.66 8.09 -51.93 -0.42 0.24 16 19 C -0.13 -0.94 4.40 -26.61 -0.12 -1.05 16 20 C -0.12 -0.75 5.88 -26.69 -0.16 -0.91 16 21 C -0.13 -0.91 6.10 -26.38 -0.16 -1.07 16 22 C 0.05 0.41 6.26 -3.48 -0.02 0.39 16 23 N -0.58 -5.77 2.97 -165.46 -0.49 -6.26 16 24 C 0.49 5.89 7.52 -11.59 -0.09 5.80 16 25 O -0.47 -7.06 9.15 -4.75 -0.04 -7.10 16 26 C 0.52 5.72 8.07 -11.59 -0.09 5.63 16 27 N -0.81 -7.27 8.87 30.90 0.27 -7.00 16 28 O -0.52 -6.22 13.86 5.50 0.08 -6.14 16 29 H 0.07 1.06 7.64 -51.93 -0.40 0.66 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.59 6.44 -51.93 -0.33 0.26 16 32 H 0.39 4.82 8.51 -40.82 -0.35 4.47 16 33 H 0.08 1.69 8.14 -51.91 -0.42 1.26 16 34 H 0.08 1.64 8.14 -51.92 -0.42 1.21 16 35 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.53 6.71 -51.93 -0.35 0.18 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.16 1.55 3.78 -57.00 -0.22 1.33 16 44 H 0.42 3.97 8.32 -40.82 -0.34 3.63 16 45 H 0.41 2.71 8.93 -40.82 -0.36 2.35 16 LS Contribution 369.81 15.07 5.57 5.57 Total: -1.00 -36.05 369.81 -8.03 -44.08 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -6.42 Total: 7.93 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -0.24 Total: 4.62 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: 0.33 Total: -49.57 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.04 Total: -25.49 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.05 -8.03 -44.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720578904.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.182 kcal (2) G-P(sol) polarization free energy of solvation -36.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds