Wall clock time and date at job start Wed Apr 1 2020 01:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46878 * 2 1 4 4 N 1.46498 * 109.46944 * 240.00360 * 2 1 3 5 5 C 1.34779 * 120.00060 * 78.37005 * 4 2 1 6 6 O 1.21285 * 120.00041 * 0.02562 * 5 4 2 7 7 C 1.50699 * 119.99902 * 179.97438 * 5 4 2 8 8 S 1.81002 * 109.46984 * 180.02562 * 7 5 4 9 9 C 1.76199 * 100.00023 * 180.02562 * 8 7 5 10 10 H 1.07999 * 120.00084 * 359.97438 * 9 8 7 11 11 C 1.38802 * 119.99916 * 179.97438 * 9 8 7 12 12 N 1.31625 * 120.00149 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99899 * 179.97438 * 11 9 8 14 14 H 1.48509 * 109.46966 * 90.00290 * 13 11 9 15 15 H 1.48498 * 109.47407 * 210.00281 * 13 11 9 16 16 H 1.48499 * 109.47098 * 330.00529 * 13 11 9 17 17 C 1.52993 * 109.47266 * 120.00311 * 2 1 3 18 18 H 1.09000 * 109.70273 * 72.89925 * 17 2 1 19 19 C 1.53187 * 109.58902 * 312.54610 * 17 2 1 20 20 C 1.53039 * 109.31552 * 185.57817 * 19 17 2 21 21 C 1.53038 * 109.53910 * 61.36698 * 20 19 17 22 22 C 1.53631 * 109.23681 * 298.50881 * 21 20 19 23 23 N 1.46924 * 108.54007 * 54.86093 * 22 21 20 24 24 C 1.34780 * 120.62827 * 126.36783 * 23 22 21 25 25 O 1.21354 * 119.99823 * 178.34679 * 24 23 22 26 26 C 1.49445 * 120.00351 * 358.07676 * 24 23 22 27 27 N 1.34774 * 119.99932 * 186.85443 * 26 24 23 28 28 O 1.21349 * 119.99914 * 6.84855 * 26 24 23 29 29 H 1.09000 * 109.47188 * 59.99737 * 1 2 3 30 30 H 1.09000 * 109.46723 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46995 * 299.99205 * 1 2 3 32 32 H 0.97002 * 120.00259 * 258.36720 * 4 2 1 33 33 H 1.09005 * 109.47718 * 299.99862 * 7 5 4 34 34 H 1.09003 * 109.47492 * 60.00636 * 7 5 4 35 35 H 0.96996 * 120.00307 * 179.97438 * 12 11 9 36 36 H 1.09003 * 109.49594 * 305.53135 * 19 17 2 37 37 H 1.08997 * 109.50068 * 65.62295 * 19 17 2 38 38 H 1.09006 * 109.46127 * 181.38381 * 20 19 17 39 39 H 1.08994 * 109.45925 * 301.35589 * 20 19 17 40 40 H 1.08992 * 109.49941 * 58.58386 * 21 20 19 41 41 H 1.08998 * 109.50253 * 178.65323 * 21 20 19 42 42 H 1.08992 * 109.74342 * 295.11642 * 22 21 20 43 43 H 1.09009 * 109.66127 * 174.54630 * 22 21 20 44 44 H 0.96999 * 120.00013 * 359.97438 * 27 26 24 45 45 H 0.97008 * 119.99815 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.0211 -0.0573 -2.3860 6 8 1.6198 1.0844 -2.4662 7 6 2.5239 -0.7674 -3.6163 8 16 2.4012 0.3386 -5.0438 9 6 3.0355 -0.7168 -6.3041 10 1 3.3540 -1.7193 -6.0593 11 6 3.1257 -0.2599 -7.6116 12 7 2.7381 0.9621 -7.9100 13 14 3.7988 -1.3786 -8.9476 14 1 2.6843 -2.1485 -9.5565 15 1 4.4624 -0.5582 -9.9925 16 1 4.7846 -2.3185 -8.3560 17 6 2.0400 -0.7213 1.2491 18 1 1.8781 -1.7942 1.1458 19 6 1.2912 -0.2053 2.4819 20 6 1.8999 -0.8269 3.7409 21 6 3.3680 -0.4111 3.8586 22 6 4.1417 -0.9345 2.6388 23 7 3.4745 -0.4540 1.4211 24 6 4.1665 0.2142 0.4771 25 8 3.6108 0.5797 -0.5379 26 6 5.6168 0.5104 0.6829 27 7 6.2751 1.2955 -0.1926 28 8 6.2016 0.0441 1.6385 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 2.3397 -1.6035 -1.1320 33 1 3.5647 -1.0563 -3.4694 34 1 1.9211 -1.6582 -3.7937 35 1 2.8015 1.2816 -8.8237 36 1 1.3790 0.8800 2.5330 37 1 0.2395 -0.4826 2.4112 38 1 1.3530 -0.4804 4.6178 39 1 1.8342 -1.9131 3.6777 40 1 3.4363 0.6760 3.8967 41 1 3.7944 -0.8346 4.7679 42 1 4.1476 -2.0243 2.6465 43 1 5.1655 -0.5611 2.6660 44 1 5.8077 1.6680 -0.9566 45 1 7.2165 1.4880 -0.0588 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001720578904.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:03 Heat of formation + Delta-G solvation = -89.460336 kcal Electronic energy + Delta-G solvation = -29187.030810 eV Core-core repulsion = 25138.538552 eV Total energy + Delta-G solvation = -4048.492257 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.38035 -40.63421 -39.59649 -38.60676 -36.22827 -34.96589 -34.57718 -33.72123 -33.12532 -30.79428 -29.42339 -27.66499 -27.49300 -25.15188 -24.74265 -22.50110 -21.91981 -21.44825 -20.63399 -19.76062 -18.75961 -18.19934 -17.62710 -17.50817 -17.15651 -16.87494 -16.68485 -16.53562 -16.03075 -15.84017 -15.67873 -15.27490 -14.89939 -14.75325 -14.57514 -14.46350 -14.39872 -14.08902 -13.96330 -13.50901 -13.19125 -13.14754 -12.90836 -12.88805 -12.74285 -12.57620 -12.40481 -11.86741 -11.79371 -11.71004 -11.57883 -11.13677 -11.10839 -10.87916 -10.65790 -10.23794 -10.00366 -9.85032 -9.47297 -8.62927 -8.33497 -6.10459 0.36387 1.29161 1.40957 1.41629 1.48317 1.60100 1.93558 2.14719 2.28213 2.48183 2.66424 2.99892 3.36463 3.37484 3.58517 3.88376 3.96749 4.10470 4.14310 4.21782 4.22254 4.33531 4.45507 4.49953 4.51914 4.64878 4.75521 4.84279 4.93144 4.96191 5.04954 5.10946 5.23943 5.24162 5.28024 5.41727 5.47041 5.50372 5.76190 5.80395 5.91616 6.20015 6.20404 6.71846 6.80403 7.02229 7.07335 7.54443 8.75649 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.016559 B = 0.002995 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.504106 B = 9346.247727 C =10363.886040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.156 3.844 3 H 0.073 0.927 4 N -0.687 5.687 5 C 0.553 3.447 6 O -0.565 6.565 7 C -0.126 4.126 8 S -0.142 6.142 9 C -0.548 4.548 10 H 0.078 0.922 11 C 0.014 3.986 12 N -0.910 5.910 13 Si 0.998 3.002 14 H -0.268 1.268 15 H -0.276 1.276 16 H -0.260 1.260 17 C 0.141 3.859 18 H 0.101 0.899 19 C -0.125 4.125 20 C -0.117 4.117 21 C -0.130 4.130 22 C 0.047 3.953 23 N -0.573 5.573 24 C 0.482 3.518 25 O -0.509 6.509 26 C 0.515 3.485 27 N -0.804 5.804 28 O -0.533 6.533 29 H 0.031 0.969 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.400 0.600 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.271 0.729 36 H 0.060 0.940 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.053 0.947 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.145 0.855 44 H 0.418 0.582 45 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.319 -6.902 27.539 28.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.052 3.948 3 H 0.091 0.909 4 N -0.339 5.339 5 C 0.338 3.662 6 O -0.443 6.443 7 C -0.278 4.278 8 S 0.085 5.915 9 C -0.696 4.696 10 H 0.096 0.904 11 C -0.191 4.191 12 N -0.547 5.547 13 Si 0.819 3.181 14 H -0.193 1.193 15 H -0.201 1.201 16 H -0.184 1.184 17 C 0.039 3.961 18 H 0.119 0.881 19 C -0.163 4.163 20 C -0.154 4.154 21 C -0.168 4.168 22 C -0.073 4.073 23 N -0.308 5.308 24 C 0.264 3.736 25 O -0.385 6.385 26 C 0.295 3.705 27 N -0.369 5.369 28 O -0.413 6.413 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.235 0.765 33 H 0.112 0.888 34 H 0.117 0.883 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.119 0.881 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.109 0.891 42 H 0.096 0.904 43 H 0.161 0.839 44 H 0.249 0.751 45 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 1.552 -5.043 27.399 27.902 hybrid contribution 1.164 -1.583 -1.375 2.399 sum 2.716 -6.626 26.024 26.991 Atomic orbital electron populations 1.22300 0.94710 1.02943 1.02307 1.21026 0.93201 0.97865 0.82738 0.90909 1.45595 1.65207 1.16550 1.06527 1.19510 0.76838 0.85710 0.84099 1.90621 1.48426 1.19277 1.85973 1.23338 1.04505 1.03141 0.96813 1.85500 1.84503 1.22005 0.99465 1.23206 1.49053 1.01911 0.95428 0.90418 1.26105 0.95186 0.97157 1.00604 1.70180 1.45914 1.17920 1.20674 0.84973 0.78561 0.77728 0.76817 1.19285 1.20115 1.18376 1.21775 0.78957 1.00642 0.94762 0.88132 1.22027 1.00556 1.00885 0.92845 1.21555 0.95245 1.01381 0.97241 1.21968 0.96016 1.00903 0.97911 1.23450 1.01694 1.00338 0.81810 1.48038 1.09219 1.53560 1.19937 1.20239 0.87850 0.81086 0.84411 1.91076 1.68625 1.50826 1.27946 1.20321 0.88492 0.79047 0.82603 1.43572 1.15553 1.49527 1.28253 1.90334 1.68894 1.52337 1.29687 0.94946 0.90794 0.89304 0.76544 0.88761 0.88316 0.91996 0.92150 0.88097 0.90172 0.90493 0.92796 0.89094 0.90388 0.83909 0.75080 0.74427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.62 8.64 71.98 0.62 -2.99 16 2 C 0.16 3.82 1.46 44.99 0.07 3.89 16 3 H 0.07 2.35 5.89 -2.38 -0.01 2.34 16 4 N -0.69 -19.60 3.41 -442.53 -1.51 -21.11 16 5 C 0.55 22.15 6.10 87.66 0.54 22.68 16 6 O -0.56 -27.73 14.98 6.75 0.10 -27.63 16 7 C -0.13 -5.45 6.16 71.24 0.44 -5.01 16 8 S -0.14 -8.16 20.57 -56.49 -1.16 -9.33 16 9 C -0.55 -32.23 9.50 67.95 0.65 -31.58 16 10 H 0.08 4.29 7.80 -2.91 -0.02 4.26 16 11 C 0.01 0.83 5.49 84.86 0.47 1.29 16 12 N -0.91 -56.75 13.22 21.65 0.29 -56.46 16 13 Si 1.00 44.39 29.55 68.60 2.03 46.41 16 14 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 15 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 16 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 17 C 0.14 2.29 2.64 44.97 0.12 2.41 16 18 H 0.10 1.28 8.09 -2.39 -0.02 1.26 16 19 C -0.12 -1.46 4.40 30.67 0.13 -1.32 16 20 C -0.12 -1.00 5.88 30.62 0.18 -0.82 16 21 C -0.13 -1.41 6.10 30.82 0.19 -1.22 16 22 C 0.05 0.69 6.26 86.51 0.54 1.23 16 23 N -0.57 -10.53 2.97 -795.77 -2.36 -12.89 16 24 C 0.48 11.54 7.52 87.27 0.66 12.20 16 25 O -0.51 -15.59 9.15 6.53 0.06 -15.53 16 26 C 0.52 11.32 8.07 87.27 0.70 12.02 16 27 N -0.80 -14.51 8.87 -174.51 -1.55 -16.05 16 28 O -0.53 -12.34 13.86 -3.24 -0.04 -12.38 16 29 H 0.03 0.97 7.64 -2.39 -0.02 0.95 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.09 1.49 6.44 -2.39 -0.02 1.47 16 32 H 0.40 9.25 8.51 -92.71 -0.79 8.46 16 33 H 0.09 3.82 8.14 -2.39 -0.02 3.80 16 34 H 0.10 3.88 8.14 -2.39 -0.02 3.86 16 35 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 36 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.10 0.88 6.71 -2.39 -0.02 0.86 16 38 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 39 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.14 2.63 3.78 -82.70 -0.31 2.32 16 44 H 0.42 8.25 8.32 -92.71 -0.77 7.48 16 45 H 0.42 5.50 8.93 -92.70 -0.83 4.67 16 Total: -1.00 -81.68 369.81 -0.48 -82.16 By element: Atomic # 1 Polarization: 31.67 SS G_CDS: -1.63 Total: 30.04 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: 5.30 Total: 12.77 kcal Atomic # 7 Polarization: -101.39 SS G_CDS: -5.13 Total: -106.52 kcal Atomic # 8 Polarization: -55.66 SS G_CDS: 0.12 Total: -55.54 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: -8.16 SS G_CDS: -1.16 Total: -9.33 kcal Total: -81.68 -0.48 -82.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720578904.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.299 kcal (2) G-P(sol) polarization free energy of solvation -81.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds