Wall clock time and date at job start Wed Apr 1 2020 01:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.46853 * 2 1 4 4 N 1.46499 * 109.47475 * 240.00179 * 2 1 3 5 5 C 1.34776 * 120.00124 * 84.99626 * 4 2 1 6 6 O 1.21275 * 119.99955 * 0.02562 * 5 4 2 7 7 C 1.50702 * 119.99759 * 180.02562 * 5 4 2 8 8 S 1.81002 * 109.46771 * 180.02562 * 7 5 4 9 9 C 1.76203 * 99.99938 * 180.02562 * 8 7 5 10 10 H 1.07998 * 119.99777 * 359.97438 * 9 8 7 11 11 C 1.38793 * 120.00205 * 180.02562 * 9 8 7 12 12 N 1.31634 * 119.99764 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00426 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46800 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47366 * 119.99608 * 13 11 9 16 16 H 1.48504 * 109.47193 * 240.00234 * 13 11 9 17 17 C 1.52997 * 109.47404 * 119.99610 * 2 1 3 18 18 H 1.08998 * 109.70766 * 302.89633 * 17 2 1 19 19 C 1.53622 * 109.66498 * 63.48654 * 17 2 1 20 20 C 1.53041 * 109.24784 * 174.55156 * 19 17 2 21 21 C 1.53046 * 109.53255 * 298.51287 * 20 19 17 22 22 C 1.53185 * 109.31576 * 61.36358 * 21 20 19 23 23 N 1.46925 * 109.59028 * 182.53727 * 17 2 1 24 24 C 1.34778 * 120.63090 * 6.63432 * 23 17 2 25 25 O 1.21354 * 119.99659 * 5.16247 * 24 23 17 26 26 C 1.49444 * 120.00323 * 185.17483 * 24 23 17 27 27 N 1.34773 * 120.00372 * 173.22864 * 26 24 23 28 28 O 1.21356 * 119.99771 * 353.50358 * 26 24 23 29 29 H 1.09009 * 109.46655 * 174.94683 * 1 2 3 30 30 H 1.08997 * 109.47566 * 294.94191 * 1 2 3 31 31 H 1.08995 * 109.47589 * 54.94856 * 1 2 3 32 32 H 0.97000 * 119.99669 * 265.00146 * 4 2 1 33 33 H 1.08999 * 109.46816 * 299.99362 * 7 5 4 34 34 H 1.08998 * 109.47403 * 60.00008 * 7 5 4 35 35 H 0.97010 * 119.99813 * 180.02562 * 12 11 9 36 36 H 1.09009 * 109.63306 * 54.55607 * 19 17 2 37 37 H 1.08999 * 109.46043 * 294.43599 * 19 17 2 38 38 H 1.08999 * 109.46079 * 178.49741 * 20 19 17 39 39 H 1.09000 * 109.44842 * 58.52268 * 20 19 17 40 40 H 1.09005 * 109.49868 * 301.40630 * 21 20 19 41 41 H 1.09002 * 109.52160 * 181.33298 * 21 20 19 42 42 H 1.08996 * 109.58967 * 185.57243 * 22 21 20 43 43 H 1.09005 * 109.58708 * 65.14936 * 22 21 20 44 44 H 0.96999 * 120.00612 * 180.26696 * 27 26 24 45 45 H 0.97010 * 119.99753 * 0.27612 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8590 1.1586 -2.4115 7 6 2.6489 -0.7288 -3.5877 8 16 2.7106 0.4345 -4.9730 9 6 3.3124 -0.6311 -6.2408 10 1 3.5211 -1.6677 -6.0209 11 6 3.5191 -0.1381 -7.5216 12 7 3.2651 1.1254 -7.7894 13 14 4.1577 -1.2675 -8.8654 14 1 4.3631 -2.6298 -8.3109 15 1 3.1701 -1.3271 -9.9728 16 1 5.4482 -0.7436 -9.3806 17 6 2.0400 -0.7211 1.2492 18 1 1.6371 -0.2411 2.1410 19 6 1.6035 -2.1935 1.2106 20 6 2.2312 -2.9369 2.3920 21 6 3.7564 -2.8839 2.2779 22 6 4.2176 -1.4239 2.3252 23 7 3.5080 -0.6698 1.2829 24 6 4.1905 0.0598 0.3782 25 8 3.5922 0.7562 -0.4154 26 6 5.6839 0.0110 0.3522 27 7 6.3613 0.6301 -0.6348 28 8 6.2865 -0.5904 1.2170 29 1 -0.3633 -1.0238 -0.0905 30 1 -0.3634 0.4333 0.9318 31 1 -0.3634 0.5902 -0.8412 32 1 2.2490 -1.6317 -1.1526 33 1 3.6481 -1.1212 -3.3985 34 1 1.9761 -1.5506 -3.8325 35 1 3.4093 1.4699 -8.6848 36 1 1.9339 -2.6491 0.2771 37 1 0.5173 -2.2522 1.2796 38 1 1.9023 -3.9761 2.3832 39 1 1.9201 -2.4654 3.3242 40 1 4.0665 -3.3330 1.3343 41 1 4.2030 -3.4336 3.1065 42 1 5.2915 -1.3738 2.1454 43 1 3.9886 -0.9998 3.3029 44 1 7.3305 0.5952 -0.6539 45 1 5.8796 1.1109 -1.3262 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720578905.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:06 Heat of formation + Delta-G solvation = -62.754122 kcal Electronic energy + Delta-G solvation = -29548.940290 eV Core-core repulsion = 25501.606101 eV Total energy + Delta-G solvation = -4047.334189 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.48663 -39.56197 -38.28831 -37.72619 -35.09641 -34.10833 -32.89859 -32.40128 -31.74729 -29.71713 -28.30074 -26.65779 -25.45123 -24.42637 -23.85128 -21.61499 -21.18659 -20.13574 -19.55454 -17.98766 -17.69547 -17.28523 -16.56101 -16.22323 -16.04747 -15.63279 -15.41220 -14.89285 -14.78278 -14.70484 -14.39892 -14.30925 -14.01784 -13.83662 -13.66594 -13.14040 -12.97727 -12.77470 -12.70192 -12.52925 -12.11642 -11.99481 -11.68245 -11.48463 -11.20691 -11.14757 -11.05766 -10.97960 -10.91957 -10.72905 -10.13111 -10.03197 -9.75040 -9.08512 -9.04939 -8.96663 -8.90191 -8.42162 -8.15651 -6.44036 -6.19014 -3.87991 1.29939 2.25531 3.08297 3.15899 3.22008 3.30111 3.38121 3.46222 3.49787 3.89886 4.23770 4.24442 4.43534 4.49904 4.57523 4.79285 4.87974 4.98767 5.15901 5.18317 5.28860 5.40113 5.41443 5.48181 5.58581 5.59367 5.64373 5.68869 5.74297 5.80556 5.83021 5.98951 6.03011 6.08466 6.21896 6.25976 6.45043 6.59521 6.79588 6.96868 7.08991 7.62374 7.69361 7.92486 8.00051 8.38145 8.97686 9.26526 10.88254 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.014048 B = 0.003317 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.715481 B = 8438.338679 C = 9123.703420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 H 0.127 0.873 4 N -0.725 5.725 5 C 0.544 3.456 6 O -0.508 6.508 7 C -0.152 4.152 8 S -0.056 6.056 9 C -0.535 4.535 10 H 0.071 0.929 11 C 0.074 3.926 12 N -0.867 5.867 13 Si 0.916 3.084 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.280 1.280 17 C 0.137 3.863 18 H 0.088 0.912 19 C -0.133 4.133 20 C -0.121 4.121 21 C -0.132 4.132 22 C 0.045 3.955 23 N -0.580 5.580 24 C 0.496 3.504 25 O -0.474 6.474 26 C 0.517 3.483 27 N -0.813 5.813 28 O -0.523 6.523 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.386 0.614 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.267 0.733 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.161 0.839 43 H 0.062 0.938 44 H 0.411 0.589 45 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.028 -7.379 23.354 24.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.036 3.964 3 H 0.144 0.856 4 N -0.380 5.380 5 C 0.330 3.670 6 O -0.382 6.382 7 C -0.303 4.303 8 S 0.170 5.830 9 C -0.683 4.683 10 H 0.089 0.911 11 C -0.135 4.135 12 N -0.503 5.503 13 Si 0.743 3.257 14 H -0.197 1.197 15 H -0.206 1.206 16 H -0.206 1.206 17 C 0.034 3.966 18 H 0.106 0.894 19 C -0.171 4.171 20 C -0.159 4.159 21 C -0.171 4.171 22 C -0.076 4.076 23 N -0.315 5.315 24 C 0.277 3.723 25 O -0.347 6.347 26 C 0.297 3.703 27 N -0.377 5.377 28 O -0.402 6.402 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.220 0.780 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.177 0.823 43 H 0.081 0.919 44 H 0.243 0.757 45 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 0.434 -5.267 23.285 23.878 hybrid contribution 0.939 -2.580 -1.038 2.935 sum 1.373 -7.847 22.247 23.631 Atomic orbital electron populations 1.22310 0.95960 1.01967 1.02424 1.21324 0.92481 1.00305 0.82331 0.85563 1.46020 1.69680 1.12744 1.09560 1.19884 0.76844 0.87064 0.83234 1.90646 1.47898 1.15405 1.84202 1.23520 1.03080 1.04670 0.98991 1.85371 1.86294 1.12771 0.98532 1.22931 1.50633 0.98187 0.96557 0.91119 1.24969 0.95196 0.95478 0.97894 1.70036 1.45767 1.13159 1.21337 0.86157 0.78523 0.80191 0.80859 1.19697 1.20587 1.20609 1.21865 0.78861 0.96527 0.99317 0.89388 1.22099 1.01257 0.94462 0.99316 1.21557 0.95622 1.00501 0.98206 1.21893 0.95761 0.96793 1.02623 1.23365 1.03876 0.90362 0.89955 1.47893 1.06264 1.47220 1.30146 1.19991 0.87922 0.82150 0.82225 1.90959 1.67648 1.38038 1.38026 1.20403 0.89366 0.78652 0.81833 1.43629 1.11519 1.54078 1.28516 1.90275 1.69935 1.42657 1.37368 0.92788 0.92235 0.91361 0.78006 0.90130 0.89946 0.92321 0.91338 0.90051 0.91653 0.91781 0.91645 0.90789 0.82325 0.91942 0.75692 0.74717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.90 9.08 37.15 0.34 -1.56 16 2 C 0.14 1.76 1.57 -67.94 -0.11 1.65 16 3 H 0.13 2.00 5.40 -52.29 -0.28 1.72 16 4 N -0.72 -10.30 3.49 -53.81 -0.19 -10.49 16 5 C 0.54 10.47 6.31 -10.98 -0.07 10.40 16 6 O -0.51 -11.75 14.95 -12.43 -0.19 -11.94 16 7 C -0.15 -3.16 6.16 36.01 0.22 -2.94 16 8 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 9 C -0.53 -15.31 9.50 30.94 0.29 -15.02 16 10 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 11 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 12 N -0.87 -26.17 13.22 55.49 0.73 -25.44 16 13 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 14 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 C 0.14 1.29 2.75 -67.38 -0.19 1.10 16 18 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 19 C -0.13 -1.01 4.84 -26.39 -0.13 -1.14 16 20 C -0.12 -0.79 5.88 -26.69 -0.16 -0.94 16 21 C -0.13 -0.96 6.08 -26.61 -0.16 -1.12 16 22 C 0.05 0.39 6.28 -3.71 -0.02 0.37 16 23 N -0.58 -5.92 2.96 -165.48 -0.49 -6.41 16 24 C 0.50 6.20 7.21 -11.59 -0.08 6.11 16 25 O -0.47 -7.29 9.23 -12.50 -0.12 -7.41 16 26 C 0.52 6.04 8.08 -11.59 -0.09 5.94 16 27 N -0.81 -8.02 8.87 30.90 0.27 -7.74 16 28 O -0.52 -6.47 13.85 5.49 0.08 -6.39 16 29 H 0.05 0.54 6.93 -51.92 -0.36 0.18 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.39 4.76 6.61 -40.82 -0.27 4.49 16 33 H 0.08 1.58 8.14 -51.92 -0.42 1.16 16 34 H 0.08 1.62 8.14 -51.92 -0.42 1.20 16 35 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.07 0.58 6.20 -51.92 -0.32 0.26 16 37 H 0.08 0.55 6.96 -51.93 -0.36 0.19 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.16 1.64 3.70 -57.20 -0.21 1.43 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.41 3.10 8.93 -40.82 -0.36 2.74 16 45 H 0.42 4.51 8.32 -40.82 -0.34 4.17 16 LS Contribution 367.84 15.07 5.54 5.54 Total: -1.00 -35.22 367.84 -8.12 -43.34 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -6.28 Total: 9.38 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -0.25 Total: 4.86 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: 0.33 Total: -50.08 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.23 Total: -25.74 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.22 -8.12 -43.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720578905.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.415 kcal (2) G-P(sol) polarization free energy of solvation -35.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds