Wall clock time and date at job start Wed Apr 1 2020 02:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08992 * 109.47452 * 2 1 4 4 C 1.53004 * 109.46957 * 240.00144 * 2 1 3 5 5 C 1.50696 * 109.47248 * 64.99903 * 4 2 1 6 6 N 1.34780 * 120.00056 * 179.97438 * 5 4 2 7 7 O 1.21276 * 119.99949 * 0.02562 * 5 4 2 8 8 C 1.50698 * 109.47268 * 120.00300 * 2 1 3 9 9 O 1.21285 * 120.00043 * 119.99479 * 8 2 1 10 10 N 1.34778 * 119.99853 * 300.00312 * 8 2 1 11 11 C 1.46496 * 120.00057 * 180.02562 * 10 8 2 12 12 H 1.09001 * 112.85425 * 23.79473 * 11 10 8 13 13 C 1.53780 * 113.61713 * 154.99987 * 11 10 8 14 14 C 1.53772 * 87.08584 * 89.11085 * 13 11 10 15 15 H 1.09002 * 113.61695 * 270.80097 * 14 13 11 16 16 N 1.46496 * 113.61598 * 139.98595 * 14 13 11 17 17 C 1.34777 * 120.00266 * 155.00257 * 16 14 13 18 18 O 1.21274 * 120.00135 * 0.27234 * 17 16 14 19 19 C 1.50706 * 119.99766 * 179.97438 * 17 16 14 20 20 S 1.81003 * 109.46851 * 179.97438 * 19 17 16 21 21 C 1.76196 * 99.99843 * 180.02562 * 20 19 17 22 22 H 1.07998 * 120.00031 * 359.97438 * 21 20 19 23 23 C 1.38802 * 119.99637 * 180.02562 * 21 20 19 24 24 N 1.31628 * 120.00514 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99567 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46945 * 60.00520 * 25 23 21 27 27 H 1.48497 * 109.46774 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47349 * 299.99969 * 25 23 21 29 29 C 1.53775 * 87.08153 * 25.43413 * 14 13 11 30 30 H 1.09003 * 109.46677 * 60.00239 * 1 2 3 31 31 H 1.09001 * 109.46855 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46995 * 300.00326 * 1 2 3 33 33 H 1.08999 * 109.47300 * 185.00367 * 4 2 1 34 34 H 1.09004 * 109.47180 * 305.00243 * 4 2 1 35 35 H 0.96996 * 119.99802 * 0.02562 * 6 5 4 36 36 H 0.96998 * 119.99858 * 179.97438 * 6 5 4 37 37 H 0.97004 * 119.99963 * 359.97438 * 10 8 2 38 38 H 1.09008 * 113.61250 * 334.55633 * 13 11 10 39 39 H 1.09001 * 113.61649 * 203.66563 * 13 11 10 40 40 H 0.96999 * 119.99691 * 334.99242 * 16 14 13 41 41 H 1.09000 * 109.47161 * 299.99737 * 19 17 16 42 42 H 1.09001 * 109.46740 * 59.99879 * 19 17 16 43 43 H 0.96995 * 120.00407 * 179.97438 * 24 23 21 44 44 H 1.09004 * 113.61935 * 89.11558 * 29 14 13 45 45 H 1.09009 * 113.61608 * 220.02215 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0570 -2.4766 6 7 1.9853 -0.3914 -3.7002 7 8 1.0118 1.0874 -2.3633 8 6 2.0324 -0.7105 1.2304 9 8 2.7296 -1.6966 1.1191 10 7 1.7068 -0.2501 2.4545 11 6 2.1956 -0.9403 3.6506 12 1 3.1011 -1.5182 3.4656 13 6 2.2849 -0.0355 4.8909 14 6 0.8303 -0.4346 5.1899 15 1 0.0934 0.2181 4.7219 16 7 0.5652 -0.6639 6.6123 17 6 -0.6845 -0.5212 7.0965 18 8 -1.5905 -0.2077 6.3537 19 6 -0.9572 -0.7576 8.5597 20 16 -2.7150 -0.4883 8.8969 21 6 -2.7493 -0.8220 10.6266 22 1 -1.8408 -1.0973 11.1416 23 6 -3.9442 -0.7322 11.3272 24 7 -5.0518 -0.3982 10.6993 25 14 -3.9807 -1.0868 13.1609 26 1 -3.0794 -0.1403 13.8660 27 1 -5.3661 -0.9221 13.6694 28 1 -3.5254 -2.4790 13.4051 29 6 1.1043 -1.7244 4.3986 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 3.1263 -0.7996 -1.2057 34 1 1.6054 -1.7198 -1.2953 35 1 2.4892 -1.2153 -3.7908 36 1 1.7284 0.1094 -4.4902 37 1 1.1493 0.5388 2.5436 38 1 2.4077 1.0211 4.6526 39 1 2.9966 -0.3874 5.6377 40 1 1.2890 -0.9186 7.2056 41 1 -0.6901 -1.7823 8.8181 42 1 -0.3629 -0.0657 9.1564 43 1 -5.8869 -0.3358 11.1887 44 1 1.4931 -2.5381 5.0108 45 1 0.2738 -2.0313 3.7627 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001720792222.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:45 Heat of formation + Delta-G solvation = -138.059476 kcal Electronic energy + Delta-G solvation = -26457.633448 eV Core-core repulsion = 22407.033773 eV Total energy + Delta-G solvation = -4050.599674 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.68279 -40.89247 -40.18133 -39.01954 -35.34891 -35.09110 -34.62369 -34.57626 -33.34857 -30.64420 -28.81924 -27.67685 -26.72739 -26.00710 -24.50906 -22.04538 -21.81269 -20.74737 -20.67113 -19.75644 -18.72813 -18.07799 -17.85488 -17.64747 -16.94623 -16.87010 -16.86132 -16.64289 -16.40030 -15.97807 -15.86023 -15.41536 -14.86922 -14.81626 -14.51090 -14.38203 -14.19121 -13.91367 -13.71433 -13.42427 -13.29426 -13.16415 -13.11734 -12.98958 -12.85964 -12.60373 -12.20807 -12.10472 -11.89707 -11.78245 -11.55542 -11.12229 -11.02413 -10.91575 -10.79052 -10.55670 -10.26824 -10.15581 -9.94619 -8.65801 -8.33842 -6.11956 1.28279 1.44435 1.48043 1.55584 1.57833 1.62323 1.65598 2.03488 2.27595 2.34706 2.73693 3.00266 3.33078 3.41773 3.52684 3.57558 3.84428 3.90825 3.97598 3.98983 4.06847 4.17842 4.33026 4.40124 4.52562 4.59404 4.65565 4.71557 4.74724 4.82001 4.90072 4.92010 5.02131 5.04206 5.05679 5.30722 5.42147 5.45414 5.64421 5.94192 6.20152 6.45318 6.49304 6.55715 7.07389 7.17602 7.28318 7.37427 8.75049 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.027465 B = 0.001611 C = 0.001547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.218500 B =17378.358051 C =18095.748152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 H 0.112 0.888 4 C -0.121 4.121 5 C 0.517 3.483 6 N -0.840 5.840 7 O -0.583 6.583 8 C 0.525 3.475 9 O -0.572 6.572 10 N -0.706 5.706 11 C 0.127 3.873 12 H 0.109 0.891 13 C -0.129 4.129 14 C 0.113 3.887 15 H 0.094 0.906 16 N -0.701 5.701 17 C 0.534 3.466 18 O -0.567 6.567 19 C -0.131 4.131 20 S -0.153 6.153 21 C -0.548 4.548 22 H 0.083 0.917 23 C 0.014 3.986 24 N -0.911 5.911 25 Si 0.998 3.002 26 H -0.262 1.262 27 H -0.279 1.279 28 H -0.262 1.262 29 C -0.163 4.163 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.417 0.583 36 H 0.407 0.593 37 H 0.412 0.588 38 H 0.093 0.907 39 H 0.125 0.875 40 H 0.418 0.582 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.271 0.729 44 H 0.105 0.895 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.862 -1.570 -23.419 32.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 H 0.130 0.870 4 C -0.161 4.161 5 C 0.303 3.697 6 N -0.403 5.403 7 O -0.463 6.463 8 C 0.313 3.687 9 O -0.451 6.451 10 N -0.357 5.357 11 C 0.021 3.979 12 H 0.127 0.873 13 C -0.167 4.167 14 C 0.008 3.992 15 H 0.112 0.888 16 N -0.354 5.354 17 C 0.320 3.680 18 O -0.445 6.445 19 C -0.282 4.282 20 S 0.074 5.926 21 C -0.696 4.696 22 H 0.101 0.899 23 C -0.191 4.191 24 N -0.548 5.548 25 Si 0.819 3.181 26 H -0.186 1.186 27 H -0.205 1.205 28 H -0.187 1.187 29 C -0.203 4.203 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.131 0.869 34 H 0.126 0.874 35 H 0.249 0.751 36 H 0.238 0.762 37 H 0.248 0.752 38 H 0.112 0.888 39 H 0.143 0.857 40 H 0.256 0.744 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.080 0.920 44 H 0.123 0.877 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 21.311 -1.095 -24.466 32.464 hybrid contribution 0.482 -0.489 1.698 1.831 sum 21.793 -1.585 -22.768 31.557 Atomic orbital electron populations 1.21875 0.92325 1.02374 1.03952 1.20983 0.98108 1.01147 0.90941 0.87044 1.21439 1.04444 1.00062 0.90146 1.20782 0.77866 0.84786 0.86283 1.43758 1.59118 1.29949 1.07510 1.90723 1.41779 1.26470 1.87368 1.20844 0.78876 0.83824 0.85205 1.90681 1.39583 1.27557 1.87302 1.45711 1.53170 1.31945 1.04827 1.21631 0.97497 0.94813 0.84007 0.87311 1.23686 0.94814 1.01537 0.96693 1.22692 0.98107 0.97893 0.80484 0.88791 1.45721 1.08820 1.70424 1.10411 1.20101 0.83239 0.75682 0.88991 1.90685 1.45555 1.48025 1.60228 1.23394 1.02273 1.06452 0.96082 1.85578 1.04786 1.91191 1.11055 1.23185 0.98226 1.54434 0.93731 0.89873 1.26121 0.94023 0.94071 1.04868 1.70174 0.99948 1.45924 1.38734 0.85013 0.77676 0.79349 0.76016 1.18610 1.20461 1.18682 1.23971 0.99248 0.98181 0.98885 0.90562 0.92709 0.91548 0.86875 0.87417 0.75141 0.76157 0.75174 0.88815 0.85672 0.74404 0.87283 0.87109 0.92016 0.87690 0.92618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 8.83 71.98 0.64 -1.65 16 2 C -0.09 -1.27 2.37 -11.54 -0.03 -1.30 16 3 H 0.11 1.48 7.95 -2.39 -0.02 1.46 16 4 C -0.12 -1.38 4.52 29.85 0.13 -1.24 16 5 C 0.52 6.78 7.82 87.66 0.69 7.46 16 6 N -0.84 -4.69 8.87 -173.54 -1.54 -6.23 16 7 O -0.58 -12.46 14.80 -3.02 -0.04 -12.51 16 8 C 0.52 8.99 7.15 87.66 0.63 9.62 16 9 O -0.57 -13.13 15.52 -3.04 -0.05 -13.18 16 10 N -0.71 -10.22 5.15 -440.03 -2.27 -12.49 16 11 C 0.13 1.82 4.32 45.52 0.20 2.01 16 12 H 0.11 1.66 7.46 -2.39 -0.02 1.65 16 13 C -0.13 -1.43 7.58 31.12 0.24 -1.20 16 14 C 0.11 2.19 4.11 45.51 0.19 2.38 16 15 H 0.09 2.26 7.47 -2.39 -0.02 2.24 16 16 N -0.70 -15.82 5.35 -440.07 -2.36 -18.17 16 17 C 0.53 18.86 7.85 87.66 0.69 19.55 16 18 O -0.57 -25.59 15.46 -3.01 -0.05 -25.63 16 19 C -0.13 -5.03 6.16 71.24 0.44 -4.59 16 20 S -0.15 -8.45 20.57 -56.49 -1.16 -9.61 16 21 C -0.55 -31.12 9.50 67.96 0.65 -30.48 16 22 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 23 C 0.01 0.79 5.49 84.86 0.47 1.26 16 24 N -0.91 -55.96 13.22 21.65 0.29 -55.67 16 25 Si 1.00 43.32 29.55 68.60 2.03 45.35 16 26 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 27 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 28 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 29 C -0.16 -2.94 7.68 31.12 0.24 -2.70 16 30 H 0.08 1.40 5.95 -2.39 -0.01 1.39 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.95 7.56 -2.39 -0.02 0.94 16 33 H 0.11 1.08 7.95 -2.39 -0.02 1.07 16 34 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.42 -0.11 8.83 -92.71 -0.82 -0.93 16 36 H 0.41 1.77 8.93 -92.71 -0.83 0.94 16 37 H 0.41 4.84 8.12 -92.71 -0.75 4.08 16 38 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.13 0.87 8.12 -2.39 -0.02 0.85 16 40 H 0.42 6.34 8.73 -92.71 -0.81 5.53 16 41 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 42 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 43 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 44 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -86.64 393.42 -2.14 -88.78 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: -2.14 Total: 20.24 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 5.15 Total: -0.88 kcal Atomic # 7 Polarization: -86.69 SS G_CDS: -5.88 Total: -92.56 kcal Atomic # 8 Polarization: -51.18 SS G_CDS: -0.14 Total: -51.32 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.16 Total: -9.61 kcal Total: -86.64 -2.14 -88.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720792222.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.275 kcal (2) G-P(sol) polarization free energy of solvation -86.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds