Wall clock time and date at job start Wed Apr 1 2020 02:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21278 * 119.99945 * 2 1 4 4 N 1.34775 * 119.99692 * 180.02562 * 2 1 3 5 5 C 1.46502 * 119.99807 * 180.02562 * 4 2 1 6 6 C 1.50699 * 109.47185 * 179.97438 * 5 4 2 7 7 O 1.21278 * 120.00197 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00177 * 179.97438 * 6 5 4 9 9 C 1.46495 * 120.00561 * 180.02562 * 8 6 5 10 10 C 1.52988 * 109.47720 * 184.88839 * 9 8 6 11 11 H 1.09006 * 110.00323 * 56.16259 * 10 9 8 12 12 C 1.54329 * 109.88291 * 295.07115 * 10 9 8 13 13 C 1.55152 * 102.94446 * 218.38757 * 12 10 9 14 14 C 1.54915 * 101.58145 * 35.49857 * 13 12 10 15 15 N 1.47020 * 109.88667 * 177.26318 * 10 9 8 16 16 C 1.34784 * 125.64665 * 298.32156 * 15 10 9 17 17 O 1.21286 * 119.99639 * 354.96344 * 16 15 10 18 18 C 1.50700 * 120.00138 * 174.96874 * 16 15 10 19 19 S 1.80997 * 109.47022 * 180.02562 * 18 16 15 20 20 C 1.76197 * 99.99755 * 179.97438 * 19 18 16 21 21 H 1.08004 * 120.00252 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00115 * 180.02562 * 20 19 18 23 23 N 1.31637 * 119.99757 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00482 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47331 * 89.99679 * 24 22 20 26 26 H 1.48495 * 109.47316 * 210.00077 * 24 22 20 27 27 H 1.48511 * 109.46899 * 329.99927 * 24 22 20 28 28 H 1.09004 * 109.47203 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47246 * 299.99582 * 1 2 3 30 30 H 1.08992 * 109.47281 * 59.99820 * 1 2 3 31 31 H 0.96999 * 120.00471 * 359.97438 * 4 2 1 32 32 H 1.09003 * 109.47565 * 59.99398 * 5 4 2 33 33 H 1.08998 * 109.46825 * 299.99732 * 5 4 2 34 34 H 0.97003 * 119.99752 * 359.97438 * 8 6 5 35 35 H 1.09003 * 109.47135 * 64.88204 * 9 8 6 36 36 H 1.09005 * 109.46893 * 304.88982 * 9 8 6 37 37 H 1.08999 * 110.71908 * 100.02578 * 12 10 9 38 38 H 1.09000 * 110.71382 * 336.75214 * 12 10 9 39 39 H 1.08996 * 111.00609 * 153.57488 * 13 12 10 40 40 H 1.08999 * 111.00776 * 277.43135 * 13 12 10 41 41 H 1.09000 * 110.36477 * 81.83252 * 14 13 12 42 42 H 1.09000 * 110.36850 * 204.03909 * 14 13 12 43 43 H 1.09004 * 109.46386 * 299.99961 * 18 16 15 44 44 H 1.09000 * 109.47217 * 59.99582 * 18 16 15 45 45 H 0.96999 * 119.99989 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6458 -1.1673 0.0000 6 6 4.1481 -2.5881 -0.0001 7 8 3.3601 -3.5099 -0.0001 8 7 5.4732 -2.8344 -0.0001 9 6 5.9616 -4.2155 -0.0008 10 6 7.4866 -4.2174 0.1222 11 1 7.7892 -3.6724 1.0163 12 6 8.1147 -3.5653 -1.1276 13 6 9.3709 -4.4398 -1.3817 14 6 8.8614 -5.8434 -0.9692 15 7 7.9813 -5.6003 0.1882 16 6 7.6806 -6.4971 1.1484 17 8 7.0172 -6.1604 2.1063 18 6 8.1686 -7.9181 1.0317 19 16 7.6046 -8.8692 2.4647 20 6 8.2958 -10.4432 2.0784 21 1 8.8687 -10.5738 1.1721 22 6 8.1042 -11.5155 2.9387 23 7 7.4065 -11.3562 4.0435 24 14 8.8376 -13.1840 2.5296 25 1 10.2006 -13.2817 3.1108 26 1 7.9794 -14.2546 3.0975 27 1 8.9157 -13.3423 1.0550 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6958 -2.0073 -0.0005 32 1 4.0089 -0.6539 0.8905 33 1 4.0095 -0.6529 -0.8895 34 1 6.1036 -2.0971 -0.0005 35 1 5.6715 -4.7030 -0.9316 36 1 5.5285 -4.7545 0.8419 37 1 8.3985 -2.5331 -0.9226 38 1 7.4308 -3.6175 -1.9747 39 1 9.6540 -4.4206 -2.4340 40 1 10.2010 -4.1243 -0.7496 41 1 8.2987 -6.2975 -1.7849 42 1 9.6976 -6.4821 -0.6847 43 1 7.7714 -8.3649 0.1203 44 1 9.2580 -7.9264 0.9955 45 1 7.2729 -12.1054 4.6450 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721175379.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:44 Heat of formation + Delta-G solvation = -109.354046 kcal Electronic energy + Delta-G solvation = -26861.272637 eV Core-core repulsion = 22811.917724 eV Total energy + Delta-G solvation = -4049.354913 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.65170 -40.06907 -39.25460 -37.39668 -35.22002 -34.69896 -32.44869 -31.93145 -31.21201 -30.39553 -28.75177 -27.53425 -25.53171 -25.22566 -22.87060 -21.50167 -20.98013 -20.92789 -19.22819 -18.07940 -17.66962 -17.25775 -16.81983 -16.41249 -16.37482 -16.22779 -15.37346 -15.20042 -14.96523 -14.82095 -14.56225 -14.18419 -14.03811 -13.90748 -13.51681 -13.43280 -13.24226 -12.97687 -12.95608 -12.70176 -12.56322 -12.40613 -12.31548 -11.80408 -11.54667 -11.22512 -11.10373 -11.07341 -11.04103 -10.78136 -10.37701 -10.34181 -9.84185 -9.62263 -9.53132 -9.32976 -9.08482 -8.67005 -8.26221 -6.52724 -6.23458 -3.94486 2.18448 2.27636 2.34630 2.81214 2.95556 3.14810 3.20949 3.26266 3.29683 3.58038 4.13813 4.18865 4.20091 4.30254 4.47062 4.51498 4.79692 4.81214 4.85677 4.94824 4.96845 5.02078 5.03921 5.07773 5.11705 5.35171 5.39736 5.42934 5.48742 5.51054 5.59934 5.73113 5.78054 5.86389 5.87190 5.91254 6.00196 6.09531 6.36655 7.04560 7.10049 7.54111 7.57845 7.77629 7.81224 8.33167 8.45547 9.21730 10.83948 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.014806 B = 0.002045 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.715116 B =13689.045304 C =15202.267797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.514 3.486 3 O -0.552 6.552 4 N -0.719 5.719 5 C 0.099 3.901 6 C 0.508 3.492 7 O -0.531 6.531 8 N -0.719 5.719 9 C 0.108 3.892 10 C 0.129 3.871 11 H 0.082 0.918 12 C -0.132 4.132 13 C -0.131 4.131 14 C 0.100 3.900 15 N -0.621 5.621 16 C 0.549 3.451 17 O -0.509 6.509 18 C -0.147 4.147 19 S -0.059 6.059 20 C -0.536 4.536 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.414 0.586 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.402 0.598 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.981 21.844 -14.394 26.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.301 3.699 3 O -0.430 6.430 4 N -0.375 5.375 5 C -0.029 4.029 6 C 0.293 3.707 7 O -0.407 6.407 8 N -0.371 5.371 9 C -0.017 4.017 10 C 0.025 3.975 11 H 0.100 0.900 12 C -0.170 4.170 13 C -0.169 4.169 14 C -0.023 4.023 15 N -0.359 5.359 16 C 0.338 3.662 17 O -0.383 6.383 18 C -0.298 4.298 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.098 0.902 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.252 0.748 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.236 0.764 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.100 0.900 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.199 22.224 -12.720 25.949 hybrid contribution 1.444 -1.628 -1.376 2.575 sum -2.755 20.596 -14.096 25.109 Atomic orbital electron populations 1.21833 0.91033 1.04636 1.05448 1.20856 0.90842 0.82951 0.75228 1.90729 1.70784 1.31417 1.50030 1.45897 1.05941 1.10134 1.75528 1.21049 0.82704 0.94156 1.04942 1.20481 0.82763 0.91064 0.76423 1.90752 1.55020 1.45898 1.49067 1.45714 1.06702 1.09322 1.75390 1.21807 0.93826 0.82197 1.03840 1.21607 0.92363 0.84404 0.99168 0.89993 1.22786 0.97585 0.99502 0.97084 1.22771 0.97545 0.94317 1.02313 1.22326 0.93920 0.97637 0.88448 1.48512 1.49606 1.11665 1.26100 1.20118 0.79310 0.86201 0.80597 1.90723 1.38137 1.79290 1.30114 1.23521 1.04285 0.94339 1.07614 1.85427 1.70377 1.04939 1.22529 1.22850 1.39289 0.95361 1.10876 0.90915 1.24999 0.95007 0.99099 0.94494 1.70019 1.37333 1.32109 1.10755 0.86160 0.78906 0.81730 0.78659 1.20264 1.20732 1.19689 0.90246 0.88479 0.88549 0.74764 0.88197 0.88280 0.76366 0.91148 0.89227 0.89882 0.90161 0.89681 0.90340 0.91252 0.90018 0.89166 0.89264 0.92153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 10.39 36.01 0.37 -0.49 16 2 C 0.51 4.58 7.94 -10.99 -0.09 4.49 16 3 O -0.55 -7.00 17.10 5.56 0.10 -6.90 16 4 N -0.72 -6.01 5.53 -61.47 -0.34 -6.35 16 5 C 0.10 0.77 6.15 -5.19 -0.03 0.74 16 6 C 0.51 5.14 7.90 -10.98 -0.09 5.05 16 7 O -0.53 -7.59 15.66 5.56 0.09 -7.51 16 8 N -0.72 -6.12 5.39 -60.30 -0.32 -6.45 16 9 C 0.11 1.25 5.05 -4.05 -0.02 1.23 16 10 C 0.13 1.33 2.95 -66.96 -0.20 1.13 16 11 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 12 C -0.13 -0.81 5.98 -24.90 -0.15 -0.96 16 13 C -0.13 -0.83 7.09 -24.58 -0.17 -1.01 16 14 C 0.10 0.94 6.65 -2.53 -0.02 0.92 16 15 N -0.62 -8.18 3.06 -163.02 -0.50 -8.68 16 16 C 0.55 10.16 7.60 -10.98 -0.08 10.08 16 17 O -0.51 -11.39 15.05 5.55 0.08 -11.30 16 18 C -0.15 -2.95 5.25 36.01 0.19 -2.76 16 19 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 20 C -0.54 -15.17 9.50 30.94 0.29 -14.87 16 21 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -26.12 13.22 55.49 0.73 -25.38 16 24 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 28 H 0.08 0.28 7.91 -51.93 -0.41 -0.13 16 29 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.41 3.34 7.27 -40.82 -0.30 3.04 16 32 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.40 2.04 8.18 -40.82 -0.33 1.70 16 35 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 36 H 0.09 1.46 6.94 -51.93 -0.36 1.10 16 37 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.08 0.46 7.80 -51.93 -0.41 0.06 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.77 7.51 -51.93 -0.39 0.38 16 43 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 44 H 0.09 1.64 7.77 -51.92 -0.40 1.24 16 45 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 393.39 15.07 5.93 5.93 Total: -1.00 -39.02 393.39 -8.35 -47.37 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -6.79 Total: 1.26 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -0.09 Total: 5.55 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: -0.43 Total: -46.86 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: 0.27 Total: -25.71 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -39.02 -8.35 -47.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721175379.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.984 kcal (2) G-P(sol) polarization free energy of solvation -39.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds