Wall clock time and date at job start Wed Apr 1 2020 02:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21278 * 119.99945 * 2 1 4 4 N 1.34775 * 119.99692 * 180.02562 * 2 1 3 5 5 C 1.46502 * 119.99807 * 180.02562 * 4 2 1 6 6 C 1.50699 * 109.47185 * 179.97438 * 5 4 2 7 7 O 1.21278 * 120.00197 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00177 * 179.97438 * 6 5 4 9 9 C 1.46495 * 120.00561 * 180.02562 * 8 6 5 10 10 C 1.52988 * 109.47720 * 184.88839 * 9 8 6 11 11 H 1.09006 * 110.00323 * 56.16259 * 10 9 8 12 12 C 1.54329 * 109.88291 * 295.07115 * 10 9 8 13 13 C 1.55152 * 102.94446 * 218.38757 * 12 10 9 14 14 C 1.54915 * 101.58145 * 35.49857 * 13 12 10 15 15 N 1.47020 * 109.88667 * 177.26318 * 10 9 8 16 16 C 1.34784 * 125.64665 * 298.32156 * 15 10 9 17 17 O 1.21286 * 119.99639 * 354.96344 * 16 15 10 18 18 C 1.50700 * 120.00138 * 174.96874 * 16 15 10 19 19 S 1.80997 * 109.47022 * 180.02562 * 18 16 15 20 20 C 1.76197 * 99.99755 * 179.97438 * 19 18 16 21 21 H 1.08004 * 120.00252 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00115 * 180.02562 * 20 19 18 23 23 N 1.31637 * 119.99757 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00482 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47331 * 89.99679 * 24 22 20 26 26 H 1.48495 * 109.47316 * 210.00077 * 24 22 20 27 27 H 1.48511 * 109.46899 * 329.99927 * 24 22 20 28 28 H 1.09004 * 109.47203 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47246 * 299.99582 * 1 2 3 30 30 H 1.08992 * 109.47281 * 59.99820 * 1 2 3 31 31 H 0.96999 * 120.00471 * 359.97438 * 4 2 1 32 32 H 1.09003 * 109.47565 * 59.99398 * 5 4 2 33 33 H 1.08998 * 109.46825 * 299.99732 * 5 4 2 34 34 H 0.97003 * 119.99752 * 359.97438 * 8 6 5 35 35 H 1.09003 * 109.47135 * 64.88204 * 9 8 6 36 36 H 1.09005 * 109.46893 * 304.88982 * 9 8 6 37 37 H 1.08999 * 110.71908 * 100.02578 * 12 10 9 38 38 H 1.09000 * 110.71382 * 336.75214 * 12 10 9 39 39 H 1.08996 * 111.00609 * 153.57488 * 13 12 10 40 40 H 1.08999 * 111.00776 * 277.43135 * 13 12 10 41 41 H 1.09000 * 110.36477 * 81.83252 * 14 13 12 42 42 H 1.09000 * 110.36850 * 204.03909 * 14 13 12 43 43 H 1.09004 * 109.46386 * 299.99961 * 18 16 15 44 44 H 1.09000 * 109.47217 * 59.99582 * 18 16 15 45 45 H 0.96999 * 119.99989 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6458 -1.1673 0.0000 6 6 4.1481 -2.5881 -0.0001 7 8 3.3601 -3.5099 -0.0001 8 7 5.4732 -2.8344 -0.0001 9 6 5.9616 -4.2155 -0.0008 10 6 7.4866 -4.2174 0.1222 11 1 7.7892 -3.6724 1.0163 12 6 8.1147 -3.5653 -1.1276 13 6 9.3709 -4.4398 -1.3817 14 6 8.8614 -5.8434 -0.9692 15 7 7.9813 -5.6003 0.1882 16 6 7.6806 -6.4971 1.1484 17 8 7.0172 -6.1604 2.1063 18 6 8.1686 -7.9181 1.0317 19 16 7.6046 -8.8692 2.4647 20 6 8.2958 -10.4432 2.0784 21 1 8.8687 -10.5738 1.1721 22 6 8.1042 -11.5155 2.9387 23 7 7.4065 -11.3562 4.0435 24 14 8.8376 -13.1840 2.5296 25 1 10.2006 -13.2817 3.1108 26 1 7.9794 -14.2546 3.0975 27 1 8.9157 -13.3423 1.0550 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6958 -2.0073 -0.0005 32 1 4.0089 -0.6539 0.8905 33 1 4.0095 -0.6529 -0.8895 34 1 6.1036 -2.0971 -0.0005 35 1 5.6715 -4.7030 -0.9316 36 1 5.5285 -4.7545 0.8419 37 1 8.3985 -2.5331 -0.9226 38 1 7.4308 -3.6175 -1.9747 39 1 9.6540 -4.4206 -2.4340 40 1 10.2010 -4.1243 -0.7496 41 1 8.2987 -6.2975 -1.7849 42 1 9.6976 -6.4821 -0.6847 43 1 7.7714 -8.3649 0.1203 44 1 9.2580 -7.9264 0.9955 45 1 7.2729 -12.1054 4.6450 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721175379.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:43 Heat of formation + Delta-G solvation = -140.937012 kcal Electronic energy + Delta-G solvation = -26862.642178 eV Core-core repulsion = 22811.917724 eV Total energy + Delta-G solvation = -4050.724454 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.57246 -41.03215 -40.12503 -38.59534 -36.09032 -35.50143 -34.60716 -33.03121 -31.92844 -31.11395 -30.09373 -28.21738 -27.68533 -26.06035 -23.86357 -22.28104 -21.73801 -21.65014 -20.47552 -19.59010 -18.77972 -18.25624 -17.91507 -17.26564 -17.16076 -17.07737 -16.90163 -16.49541 -16.24126 -16.01517 -15.82950 -15.39738 -15.08213 -14.83885 -14.59308 -14.23141 -14.10432 -13.99708 -13.95933 -13.67340 -13.60034 -13.31830 -13.18390 -12.98009 -12.91856 -12.88436 -12.63618 -12.13688 -11.97639 -11.74348 -11.64024 -11.29133 -11.16083 -11.10630 -10.98266 -10.38498 -10.30614 -10.21193 -9.78918 -8.70498 -8.36622 -6.15604 1.19007 1.36850 1.40466 1.41416 1.48761 1.54323 1.57562 1.69254 2.10047 2.25324 2.47999 2.97516 3.20877 3.45939 3.47897 3.58840 3.78471 3.89931 3.93586 4.06319 4.17429 4.26636 4.26986 4.31361 4.39033 4.42951 4.50448 4.62988 4.66554 4.73061 4.81421 4.93043 5.00531 5.04751 5.10135 5.16718 5.24507 5.35630 5.39423 5.40992 6.17602 6.31434 6.33785 6.43467 7.01607 7.04332 7.07951 7.12716 8.72682 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.014806 B = 0.002045 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.715116 B =13689.045304 C =15202.267797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.511 3.489 3 O -0.593 6.593 4 N -0.719 5.719 5 C 0.104 3.896 6 C 0.508 3.492 7 O -0.578 6.578 8 N -0.701 5.701 9 C 0.119 3.881 10 C 0.126 3.874 11 H 0.078 0.922 12 C -0.118 4.118 13 C -0.120 4.120 14 C 0.084 3.916 15 N -0.612 5.612 16 C 0.546 3.454 17 O -0.561 6.561 18 C -0.120 4.120 19 S -0.153 6.153 20 C -0.545 4.545 21 H 0.083 0.917 22 C 0.012 3.988 23 N -0.912 5.912 24 Si 1.000 3.000 25 H -0.266 1.266 26 H -0.278 1.278 27 H -0.257 1.257 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.416 0.584 32 H 0.110 0.890 33 H 0.121 0.879 34 H 0.422 0.578 35 H 0.066 0.934 36 H 0.036 0.964 37 H 0.116 0.884 38 H 0.091 0.909 39 H 0.114 0.886 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.104 0.896 44 H 0.108 0.892 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.347 22.965 -17.339 28.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.300 3.700 3 O -0.474 6.474 4 N -0.375 5.375 5 C -0.023 4.023 6 C 0.295 3.705 7 O -0.457 6.457 8 N -0.355 5.355 9 C -0.007 4.007 10 C 0.022 3.978 11 H 0.096 0.904 12 C -0.156 4.156 13 C -0.157 4.157 14 C -0.037 4.037 15 N -0.348 5.348 16 C 0.334 3.666 17 O -0.439 6.439 18 C -0.271 4.271 19 S 0.074 5.926 20 C -0.693 4.693 21 H 0.102 0.898 22 C -0.193 4.193 23 N -0.548 5.548 24 Si 0.822 3.178 25 H -0.192 1.192 26 H -0.203 1.203 27 H -0.181 1.181 28 H 0.115 0.885 29 H 0.123 0.877 30 H 0.126 0.874 31 H 0.254 0.746 32 H 0.127 0.873 33 H 0.138 0.862 34 H 0.261 0.739 35 H 0.085 0.915 36 H 0.054 0.946 37 H 0.134 0.866 38 H 0.110 0.890 39 H 0.133 0.867 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.122 0.878 44 H 0.127 0.873 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.513 23.395 -15.726 28.301 hybrid contribution 0.944 -1.876 -0.530 2.166 sum -1.570 21.519 -16.256 27.014 Atomic orbital electron populations 1.21882 0.88142 1.06098 1.06341 1.21498 0.92249 0.82191 0.74043 1.90706 1.71876 1.32674 1.52167 1.46006 1.06288 1.10218 1.74973 1.21112 0.82625 0.92239 1.06350 1.20932 0.82713 0.91599 0.75264 1.90736 1.56246 1.47486 1.51242 1.45501 1.06778 1.08768 1.74411 1.21483 0.94712 0.83250 1.01259 1.21869 0.91442 0.82908 1.01616 0.90437 1.22827 0.97287 1.00696 0.94781 1.22787 0.97339 0.91512 1.04100 1.22741 0.93490 1.00353 0.87122 1.48459 1.48874 1.11991 1.25442 1.19814 0.79151 0.86379 0.81266 1.90703 1.40593 1.80022 1.32575 1.23317 1.05160 0.94563 1.04099 1.85618 1.71858 1.07144 1.27934 1.23187 1.39278 0.95518 1.11337 0.89841 1.26165 0.95233 1.03754 0.94111 1.70192 1.38956 1.33544 1.12115 0.84929 0.78094 0.75677 0.79131 1.19152 1.20343 1.18111 0.88541 0.87701 0.87387 0.74591 0.87253 0.86175 0.73947 0.91537 0.94574 0.86592 0.88999 0.86732 0.89923 0.90043 0.89927 0.87762 0.87343 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 10.39 71.24 0.74 -0.71 16 2 C 0.51 8.67 7.94 87.66 0.70 9.37 16 3 O -0.59 -14.68 17.10 -3.02 -0.05 -14.73 16 4 N -0.72 -11.55 5.53 -466.79 -2.58 -14.13 16 5 C 0.10 1.50 6.15 85.63 0.53 2.02 16 6 C 0.51 10.15 7.90 87.66 0.69 10.84 16 7 O -0.58 -17.08 15.66 -3.02 -0.05 -17.13 16 8 N -0.70 -11.29 5.39 -463.08 -2.50 -13.79 16 9 C 0.12 2.79 5.05 86.38 0.44 3.22 16 10 C 0.13 2.41 2.95 45.34 0.13 2.54 16 11 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 12 C -0.12 -0.97 5.98 31.78 0.19 -0.78 16 13 C -0.12 -0.99 7.09 31.99 0.23 -0.77 16 14 C 0.08 1.36 6.65 86.86 0.58 1.94 16 15 N -0.61 -15.66 3.06 -788.04 -2.42 -18.07 16 16 C 0.55 20.76 7.60 87.66 0.67 21.42 16 17 O -0.56 -26.65 15.05 -3.05 -0.05 -26.70 16 18 C -0.12 -4.89 5.25 71.24 0.37 -4.51 16 19 S -0.15 -8.63 20.57 -56.49 -1.16 -9.80 16 20 C -0.55 -31.37 9.50 67.95 0.65 -30.73 16 21 H 0.08 4.44 7.80 -2.91 -0.02 4.41 16 22 C 0.01 0.69 5.49 84.86 0.47 1.16 16 23 N -0.91 -56.56 13.22 21.65 0.29 -56.27 16 24 Si 1.00 43.71 29.55 68.60 2.03 45.74 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 26 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 27 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 28 H 0.10 0.51 7.91 -2.38 -0.02 0.49 16 29 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.42 6.61 7.27 -92.71 -0.67 5.94 16 32 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.42 3.28 8.18 -92.71 -0.76 2.52 16 35 H 0.07 1.60 8.08 -2.39 -0.02 1.58 16 36 H 0.04 1.27 6.94 -2.38 -0.02 1.25 16 37 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.09 0.63 7.80 -2.39 -0.02 0.62 16 39 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.08 1.35 7.51 -2.39 -0.02 1.33 16 43 H 0.10 3.90 8.14 -2.39 -0.02 3.88 16 44 H 0.11 3.94 7.77 -2.39 -0.02 3.92 16 45 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -91.76 393.39 -0.52 -92.28 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -0.41 Total: 17.57 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: 6.37 Total: 15.02 kcal Atomic # 7 Polarization: -95.06 SS G_CDS: -7.20 Total: -102.26 kcal Atomic # 8 Polarization: -58.41 SS G_CDS: -0.14 Total: -58.56 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.80 kcal Total: -91.76 -0.52 -92.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721175379.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.653 kcal (2) G-P(sol) polarization free energy of solvation -91.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds