Wall clock time and date at job start Wed Apr 1 2020 01:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47591 * 2 1 4 4 C 1.53004 * 109.46813 * 119.99890 * 2 1 3 5 5 N 1.46506 * 109.46859 * 174.99697 * 4 2 1 6 6 C 1.34783 * 119.99604 * 179.97438 * 5 4 2 7 7 O 1.21274 * 120.00149 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99404 * 180.02562 * 6 5 4 9 9 H 1.09001 * 110.54018 * 302.60825 * 8 6 5 10 10 C 1.54637 * 110.48195 * 180.02562 * 8 6 5 11 11 C 1.54480 * 101.79655 * 216.53924 * 10 8 6 12 12 N 1.46765 * 105.47306 * 25.39729 * 11 10 8 13 13 C 1.46505 * 124.34844 * 163.00486 * 12 11 10 14 14 C 1.34412 * 111.30144 * 342.98128 * 12 11 10 15 15 O 1.21281 * 124.94148 * 180.43343 * 14 12 11 16 16 N 1.46504 * 109.47173 * 239.99775 * 2 1 3 17 17 C 1.34772 * 120.00199 * 85.00537 * 16 2 1 18 18 O 1.21278 * 119.99817 * 359.97438 * 17 16 2 19 19 C 1.50703 * 120.00150 * 180.02562 * 17 16 2 20 20 S 1.80991 * 109.47036 * 179.97438 * 19 17 16 21 21 C 1.76203 * 99.99821 * 179.97438 * 20 19 17 22 22 H 1.07992 * 120.00092 * 0.02562 * 21 20 19 23 23 C 1.38801 * 119.99821 * 179.97438 * 21 20 19 24 24 N 1.31629 * 119.99819 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 120.00071 * 0.02562 * 23 21 20 26 26 H 1.48504 * 109.46793 * 89.99920 * 25 23 21 27 27 H 1.48495 * 109.46912 * 209.99503 * 25 23 21 28 28 H 1.48491 * 109.47136 * 329.99595 * 25 23 21 29 29 H 1.09000 * 109.47300 * 300.00380 * 1 2 3 30 30 H 1.09006 * 109.47010 * 59.99856 * 1 2 3 31 31 H 1.08994 * 109.47849 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47091 * 54.99978 * 4 2 1 33 33 H 1.08997 * 109.46863 * 294.99532 * 4 2 1 34 34 H 0.96996 * 119.99980 * 0.02562 * 5 4 2 35 35 H 1.09002 * 110.97169 * 98.40196 * 10 8 6 36 36 H 1.09003 * 110.96908 * 334.67731 * 10 8 6 37 37 H 1.09000 * 110.24248 * 144.39497 * 11 10 8 38 38 H 1.08997 * 110.24755 * 266.39754 * 11 10 8 39 39 H 1.08997 * 109.47143 * 89.99850 * 13 12 11 40 40 H 1.08999 * 109.46787 * 209.99873 * 13 12 11 41 41 H 1.09004 * 109.46951 * 330.00108 * 13 12 11 42 42 H 0.97004 * 119.99681 * 265.00549 * 16 2 1 43 43 H 1.09003 * 109.46208 * 299.99601 * 19 17 16 44 44 H 1.09003 * 109.47056 * 59.99038 * 19 17 16 45 45 H 0.97002 * 119.99812 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5000 -0.8265 1.1906 6 6 4.1730 -1.4284 2.1913 7 8 3.5699 -1.8825 3.1405 8 6 5.6749 -1.5361 2.1312 9 1 5.9850 -2.0569 1.2252 10 6 6.2159 -2.2625 3.3845 11 6 7.5339 -1.5006 3.6468 12 7 7.3418 -0.1710 3.0560 13 6 8.1702 0.9976 3.3632 14 6 6.3084 -0.1632 2.1965 15 8 5.9374 0.8035 1.5650 16 7 2.0183 -0.6907 -1.1962 17 6 2.1471 -0.0184 -2.3571 18 8 1.8584 1.1582 -2.4117 19 6 2.6490 -0.7290 -3.5877 20 16 2.7094 0.4338 -4.9733 21 6 3.3127 -0.6315 -6.2406 22 1 3.5219 -1.6678 -6.0206 23 6 3.5180 -0.1388 -7.5219 24 7 3.9692 -0.9345 -8.4684 25 14 3.1555 1.6537 -7.9026 26 1 4.3745 2.4670 -7.6626 27 1 2.7449 1.7846 -9.3237 28 1 2.0588 2.1342 -7.0243 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6052 -1.7198 1.2952 33 1 1.7516 -0.1582 2.1370 34 1 3.9824 -0.4623 0.4320 35 1 6.4088 -3.3143 3.1729 36 1 5.5294 -2.1552 4.2243 37 1 7.7130 -1.4149 4.7186 38 1 8.3672 -2.0111 3.1640 39 1 9.0118 1.0383 2.6718 40 1 7.5725 1.9035 3.2617 41 1 8.5427 0.9205 4.3848 42 1 2.2489 -1.6319 -1.1525 43 1 3.6481 -1.1215 -3.3984 44 1 1.9761 -1.5509 -3.8325 45 1 4.1131 -0.5901 -9.3638 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721933670.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:55 Heat of formation + Delta-G solvation = -107.697196 kcal Electronic energy + Delta-G solvation = -27482.381158 eV Core-core repulsion = 23433.098091 eV Total energy + Delta-G solvation = -4049.283067 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.34733 -39.79985 -39.08184 -36.93559 -36.36153 -33.89600 -33.26839 -32.44355 -31.54375 -28.90705 -28.60378 -27.27763 -26.28531 -25.61642 -22.87328 -21.83528 -21.09086 -20.45201 -19.90069 -18.11197 -17.75810 -17.33528 -16.70718 -16.63862 -16.51636 -15.96582 -15.38675 -15.11891 -15.03785 -14.92465 -14.34970 -14.18919 -14.07746 -13.78115 -13.45310 -13.31992 -13.10529 -13.03111 -12.94265 -12.79730 -12.75559 -12.59667 -12.29116 -12.13111 -11.92337 -11.58561 -11.27120 -11.19165 -11.00799 -10.60615 -10.42424 -10.15950 -9.86166 -9.56558 -9.36217 -9.21440 -9.09369 -8.99691 -8.50394 -6.92023 -6.29447 -4.01040 1.91959 2.24772 2.57120 2.73272 2.87483 2.96097 3.29008 3.33993 3.50680 3.63828 3.73245 3.88894 4.31797 4.32938 4.39065 4.43478 4.65530 4.73380 4.76357 4.81866 4.89406 4.99215 5.06687 5.08896 5.10059 5.25171 5.30081 5.32809 5.34581 5.43488 5.56219 5.57189 5.74631 5.88738 5.97170 5.99167 6.02222 6.16533 6.50307 6.55091 7.16114 7.55764 7.66262 7.83895 7.93658 8.40968 8.45962 9.16883 10.79797 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.012038 B = 0.002524 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.436301 B =11089.385698 C =12370.760393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.132 3.868 3 H 0.097 0.903 4 C 0.113 3.887 5 N -0.715 5.715 6 C 0.535 3.465 7 O -0.537 6.537 8 C -0.152 4.152 9 H 0.138 0.862 10 C -0.116 4.116 11 C 0.100 3.900 12 N -0.621 5.621 13 C 0.096 3.904 14 C 0.525 3.475 15 O -0.512 6.512 16 N -0.735 5.735 17 C 0.532 3.468 18 O -0.515 6.515 19 C -0.125 4.125 20 S -0.140 6.140 21 C -0.521 4.521 22 H 0.088 0.912 23 C 0.095 3.905 24 N -0.881 5.881 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.412 0.588 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.399 0.601 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.274 -4.135 28.175 28.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.026 3.974 3 H 0.115 0.885 4 C -0.011 4.011 5 N -0.367 5.367 6 C 0.319 3.681 7 O -0.414 6.414 8 C -0.176 4.176 9 H 0.155 0.845 10 C -0.154 4.154 11 C -0.023 4.023 12 N -0.356 5.356 13 C -0.046 4.046 14 C 0.311 3.689 15 O -0.387 6.387 16 N -0.390 5.390 17 C 0.318 3.682 18 O -0.389 6.389 19 C -0.275 4.275 20 S 0.086 5.914 21 C -0.669 4.669 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.517 5.517 25 Si 0.681 3.319 26 H -0.192 1.192 27 H -0.200 1.200 28 H -0.159 1.159 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.248 0.752 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.233 0.767 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.254 -1.901 28.248 28.630 hybrid contribution 0.811 -1.093 -0.770 1.564 sum 5.065 -2.994 27.478 28.101 Atomic orbital electron populations 1.22110 0.94043 1.02568 1.03217 1.21155 0.95001 0.98051 0.83146 0.88535 1.21738 0.79717 1.01589 0.98045 1.45958 1.07843 1.58794 1.24120 1.19697 0.88267 0.77782 0.82358 1.90704 1.69490 1.48183 1.33005 1.22196 0.94179 0.97473 1.03770 0.84477 1.22615 0.95916 0.99868 0.97020 1.22213 0.98325 0.82202 0.99516 1.48070 1.32086 1.11301 1.44155 1.21600 0.94703 0.87282 1.01002 1.20300 0.80281 0.89177 0.79189 1.90812 1.64800 1.38027 1.45014 1.46088 1.69454 1.14036 1.09456 1.20296 0.76887 0.87233 0.83777 1.90710 1.48140 1.15689 1.84317 1.23284 1.04436 1.03507 0.96291 1.84812 1.87176 1.16741 1.02685 1.22314 1.50399 0.98781 0.95381 0.89407 1.24715 0.93359 0.98289 0.94959 1.69939 1.43388 1.35827 1.02584 0.86733 0.81138 0.84840 0.79139 1.19198 1.19958 1.15908 0.91479 0.91058 0.92124 0.90527 0.89942 0.75187 0.88354 0.88009 0.89798 0.90522 0.92189 0.90453 0.90799 0.76657 0.88550 0.88453 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.48 37.16 0.35 -1.24 16 2 C 0.13 1.42 2.73 -67.93 -0.19 1.24 16 3 H 0.10 1.26 7.58 -51.93 -0.39 0.86 16 4 C 0.11 1.06 5.23 -4.04 -0.02 1.04 16 5 N -0.72 -7.28 5.12 -60.29 -0.31 -7.59 16 6 C 0.53 5.63 7.12 -10.98 -0.08 5.55 16 7 O -0.54 -6.90 15.49 5.56 0.09 -6.81 16 8 C -0.15 -1.22 3.33 -91.75 -0.31 -1.53 16 9 H 0.14 0.83 8.14 -51.93 -0.42 0.41 16 10 C -0.12 -0.64 6.48 -25.09 -0.16 -0.80 16 11 C 0.10 0.45 7.35 -3.12 -0.02 0.42 16 12 N -0.62 -4.77 3.33 -180.26 -0.60 -5.37 16 13 C 0.10 0.58 10.96 59.85 0.66 1.24 16 14 C 0.53 5.50 7.44 -10.84 -0.08 5.41 16 15 O -0.51 -7.34 16.74 5.56 0.09 -7.25 16 16 N -0.74 -8.76 4.52 -53.80 -0.24 -9.01 16 17 C 0.53 9.07 7.81 -10.99 -0.09 8.98 16 18 O -0.51 -10.79 15.52 5.56 0.09 -10.70 16 19 C -0.12 -2.35 6.16 36.01 0.22 -2.12 16 20 S -0.14 -3.54 18.55 -107.50 -1.99 -5.53 16 21 C -0.52 -14.94 10.04 30.94 0.31 -14.63 16 22 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 23 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 24 N -0.88 -26.56 13.97 55.49 0.78 -25.79 16 25 Si 0.86 21.83 27.74 -169.99 -4.72 17.12 16 26 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.41 4.44 7.67 -40.82 -0.31 4.13 16 35 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.10 0.72 7.00 -51.93 -0.36 0.35 16 37 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.58 7.93 -51.93 -0.41 0.17 16 41 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.40 3.76 8.60 -40.82 -0.35 3.41 16 43 H 0.10 1.68 8.14 -51.92 -0.42 1.25 16 44 H 0.10 1.71 8.14 -51.91 -0.42 1.28 16 45 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 392.53 15.07 5.92 5.92 Total: -1.00 -37.81 392.53 -7.31 -45.12 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -6.91 Total: 3.64 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 0.50 Total: 6.25 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: -0.38 Total: -47.75 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: 0.27 Total: -24.76 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.72 Total: 17.12 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.53 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.81 -7.31 -45.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721933670.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.582 kcal (2) G-P(sol) polarization free energy of solvation -37.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds