Wall clock time and date at job start Wed Apr 1 2020 01:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47591 * 2 1 4 4 C 1.53004 * 109.46813 * 119.99890 * 2 1 3 5 5 N 1.46506 * 109.46859 * 174.99697 * 4 2 1 6 6 C 1.34783 * 119.99604 * 179.97438 * 5 4 2 7 7 O 1.21274 * 120.00149 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99404 * 180.02562 * 6 5 4 9 9 H 1.09001 * 110.54018 * 302.60825 * 8 6 5 10 10 C 1.54637 * 110.48195 * 180.02562 * 8 6 5 11 11 C 1.54480 * 101.79655 * 216.53924 * 10 8 6 12 12 N 1.46765 * 105.47306 * 25.39729 * 11 10 8 13 13 C 1.46505 * 124.34844 * 163.00486 * 12 11 10 14 14 C 1.34412 * 111.30144 * 342.98128 * 12 11 10 15 15 O 1.21281 * 124.94148 * 180.43343 * 14 12 11 16 16 N 1.46504 * 109.47173 * 239.99775 * 2 1 3 17 17 C 1.34772 * 120.00199 * 85.00537 * 16 2 1 18 18 O 1.21278 * 119.99817 * 359.97438 * 17 16 2 19 19 C 1.50703 * 120.00150 * 180.02562 * 17 16 2 20 20 S 1.80991 * 109.47036 * 179.97438 * 19 17 16 21 21 C 1.76203 * 99.99821 * 179.97438 * 20 19 17 22 22 H 1.07992 * 120.00092 * 0.02562 * 21 20 19 23 23 C 1.38801 * 119.99821 * 179.97438 * 21 20 19 24 24 N 1.31629 * 119.99819 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 120.00071 * 0.02562 * 23 21 20 26 26 H 1.48504 * 109.46793 * 89.99920 * 25 23 21 27 27 H 1.48495 * 109.46912 * 209.99503 * 25 23 21 28 28 H 1.48491 * 109.47136 * 329.99595 * 25 23 21 29 29 H 1.09000 * 109.47300 * 300.00380 * 1 2 3 30 30 H 1.09006 * 109.47010 * 59.99856 * 1 2 3 31 31 H 1.08994 * 109.47849 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47091 * 54.99978 * 4 2 1 33 33 H 1.08997 * 109.46863 * 294.99532 * 4 2 1 34 34 H 0.96996 * 119.99980 * 0.02562 * 5 4 2 35 35 H 1.09002 * 110.97169 * 98.40196 * 10 8 6 36 36 H 1.09003 * 110.96908 * 334.67731 * 10 8 6 37 37 H 1.09000 * 110.24248 * 144.39497 * 11 10 8 38 38 H 1.08997 * 110.24755 * 266.39754 * 11 10 8 39 39 H 1.08997 * 109.47143 * 89.99850 * 13 12 11 40 40 H 1.08999 * 109.46787 * 209.99873 * 13 12 11 41 41 H 1.09004 * 109.46951 * 330.00108 * 13 12 11 42 42 H 0.97004 * 119.99681 * 265.00549 * 16 2 1 43 43 H 1.09003 * 109.46208 * 299.99601 * 19 17 16 44 44 H 1.09003 * 109.47056 * 59.99038 * 19 17 16 45 45 H 0.97002 * 119.99812 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5000 -0.8265 1.1906 6 6 4.1730 -1.4284 2.1913 7 8 3.5699 -1.8825 3.1405 8 6 5.6749 -1.5361 2.1312 9 1 5.9850 -2.0569 1.2252 10 6 6.2159 -2.2625 3.3845 11 6 7.5339 -1.5006 3.6468 12 7 7.3418 -0.1710 3.0560 13 6 8.1702 0.9976 3.3632 14 6 6.3084 -0.1632 2.1965 15 8 5.9374 0.8035 1.5650 16 7 2.0183 -0.6907 -1.1962 17 6 2.1471 -0.0184 -2.3571 18 8 1.8584 1.1582 -2.4117 19 6 2.6490 -0.7290 -3.5877 20 16 2.7094 0.4338 -4.9733 21 6 3.3127 -0.6315 -6.2406 22 1 3.5219 -1.6678 -6.0206 23 6 3.5180 -0.1388 -7.5219 24 7 3.9692 -0.9345 -8.4684 25 14 3.1555 1.6537 -7.9026 26 1 4.3745 2.4670 -7.6626 27 1 2.7449 1.7846 -9.3237 28 1 2.0588 2.1342 -7.0243 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6052 -1.7198 1.2952 33 1 1.7516 -0.1582 2.1370 34 1 3.9824 -0.4623 0.4320 35 1 6.4088 -3.3143 3.1729 36 1 5.5294 -2.1552 4.2243 37 1 7.7130 -1.4149 4.7186 38 1 8.3672 -2.0111 3.1640 39 1 9.0118 1.0383 2.6718 40 1 7.5725 1.9035 3.2617 41 1 8.5427 0.9205 4.3848 42 1 2.2489 -1.6319 -1.1525 43 1 3.6481 -1.1215 -3.3984 44 1 1.9761 -1.5509 -3.8325 45 1 4.1131 -0.5901 -9.3638 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721933670.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:54 Heat of formation + Delta-G solvation = -137.416489 kcal Electronic energy + Delta-G solvation = -27483.669883 eV Core-core repulsion = 23433.098091 eV Total energy + Delta-G solvation = -4050.571792 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.04798 -40.94195 -40.03698 -37.75276 -37.33910 -34.87560 -34.66967 -33.87201 -32.68540 -30.14365 -29.32673 -27.84953 -27.84439 -27.00301 -23.50844 -22.81802 -21.79936 -21.65771 -20.62715 -19.92253 -18.66764 -18.11820 -17.89268 -17.52082 -17.39184 -17.10310 -16.85469 -16.43356 -16.14217 -16.03438 -15.64264 -15.06893 -14.99726 -14.78427 -14.77056 -14.49796 -14.18936 -14.05771 -13.74632 -13.63870 -13.45177 -13.35200 -13.33193 -13.17397 -13.02127 -13.01395 -12.68986 -12.60465 -12.07905 -12.03335 -11.86788 -11.23170 -11.17451 -11.01363 -10.96252 -10.52825 -10.25292 -10.19061 -9.78942 -8.99222 -8.51898 -6.22068 0.98445 1.15970 1.30904 1.46117 1.49021 1.54949 1.55680 1.95703 2.13707 2.23240 2.26555 2.71847 2.86543 3.17455 3.31698 3.51525 3.75721 3.86417 3.96711 4.02774 4.13136 4.20421 4.27203 4.33052 4.39145 4.46872 4.54488 4.61213 4.65528 4.70400 4.73297 4.83682 4.97240 4.98711 5.12719 5.21411 5.34112 5.42753 5.46014 5.70762 5.94819 6.11511 6.32639 6.42824 6.93695 6.95292 7.02730 7.17617 8.60495 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.012038 B = 0.002524 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.436301 B =11089.385698 C =12370.760393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.137 3.863 3 H 0.073 0.927 4 C 0.120 3.880 5 N -0.717 5.717 6 C 0.532 3.468 7 O -0.562 6.562 8 C -0.149 4.149 9 H 0.159 0.841 10 C -0.109 4.109 11 C 0.099 3.901 12 N -0.620 5.620 13 C 0.090 3.910 14 C 0.511 3.489 15 O -0.565 6.565 16 N -0.709 5.709 17 C 0.538 3.462 18 O -0.558 6.558 19 C -0.111 4.111 20 S -0.177 6.177 21 C -0.527 4.527 22 H 0.064 0.936 23 C 0.046 3.954 24 N -0.917 5.917 25 Si 0.913 3.087 26 H -0.264 1.264 27 H -0.259 1.259 28 H -0.237 1.237 29 H 0.086 0.914 30 H 0.044 0.956 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.409 0.591 35 H 0.124 0.876 36 H 0.086 0.914 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.065 0.935 40 H 0.055 0.945 41 H 0.104 0.896 42 H 0.416 0.584 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.789 -5.249 30.276 31.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.032 3.968 3 H 0.091 0.909 4 C -0.003 4.003 5 N -0.368 5.368 6 C 0.317 3.683 7 O -0.441 6.441 8 C -0.174 4.174 9 H 0.176 0.824 10 C -0.147 4.147 11 C -0.022 4.022 12 N -0.353 5.353 13 C -0.051 4.051 14 C 0.298 3.702 15 O -0.444 6.444 16 N -0.364 5.364 17 C 0.324 3.676 18 O -0.436 6.436 19 C -0.262 4.262 20 S 0.049 5.951 21 C -0.674 4.674 22 H 0.082 0.918 23 C -0.160 4.160 24 N -0.555 5.555 25 Si 0.735 3.265 26 H -0.188 1.188 27 H -0.184 1.184 28 H -0.161 1.161 29 H 0.104 0.896 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.245 0.755 35 H 0.143 0.857 36 H 0.104 0.896 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.123 0.877 42 H 0.253 0.747 43 H 0.132 0.868 44 H 0.133 0.867 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.796 -3.081 30.407 30.936 hybrid contribution 0.688 -0.850 -1.243 1.655 sum 5.483 -3.931 29.164 29.934 Atomic orbital electron populations 1.22065 0.92843 1.03641 1.02887 1.21186 0.95821 0.96917 0.82893 0.90853 1.21705 0.79493 1.02194 0.96945 1.46043 1.08150 1.58520 1.24061 1.20095 0.89311 0.77090 0.81764 1.90690 1.70281 1.49351 1.33756 1.22282 0.92269 0.96689 1.06112 0.82418 1.22661 0.95811 1.01236 0.95030 1.22486 0.98407 0.80398 1.00938 1.48318 1.31116 1.12903 1.42978 1.21736 0.94215 0.86157 1.03008 1.20766 0.80921 0.89424 0.79120 1.90775 1.66510 1.39822 1.47268 1.45819 1.67679 1.14610 1.08271 1.19941 0.76688 0.86552 0.84426 1.90704 1.50413 1.17435 1.85006 1.23274 1.06223 1.02256 0.94467 1.84762 1.86980 1.18746 1.04566 1.22456 1.50009 0.98276 0.96676 0.91827 1.25545 0.93312 1.02130 0.94985 1.70013 1.44580 1.37685 1.03241 0.85885 0.80955 0.80129 0.79525 1.18831 1.18357 1.16100 0.89553 0.93673 0.90311 0.88894 0.89732 0.75537 0.85731 0.89586 0.87654 0.88165 0.91609 0.92564 0.87743 0.74710 0.86776 0.86716 0.91383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 9.48 71.98 0.68 -2.15 16 2 C 0.14 2.79 2.73 44.99 0.12 2.92 16 3 H 0.07 1.92 7.58 -2.39 -0.02 1.90 16 4 C 0.12 2.06 5.23 86.38 0.45 2.51 16 5 N -0.72 -13.85 5.12 -463.05 -2.37 -16.22 16 6 C 0.53 10.57 7.12 87.66 0.62 11.20 16 7 O -0.56 -13.72 15.49 -3.01 -0.05 -13.77 16 8 C -0.15 -2.17 3.33 -11.53 -0.04 -2.20 16 9 H 0.16 1.56 8.14 -2.39 -0.02 1.54 16 10 C -0.11 -0.92 6.48 31.65 0.21 -0.72 16 11 C 0.10 0.57 7.35 86.83 0.64 1.21 16 12 N -0.62 -8.54 3.33 -842.82 -2.81 -11.35 16 13 C 0.09 0.99 10.96 127.77 1.40 2.39 16 14 C 0.51 10.43 7.44 87.92 0.65 11.08 16 15 O -0.56 -16.68 16.74 -3.03 -0.05 -16.73 16 16 N -0.71 -15.82 4.52 -442.53 -2.00 -17.82 16 17 C 0.54 17.92 7.81 87.66 0.68 18.60 16 18 O -0.56 -23.49 15.52 -3.02 -0.05 -23.54 16 19 C -0.11 -4.08 6.16 71.24 0.44 -3.65 16 20 S -0.18 -8.92 18.55 -56.49 -1.05 -9.97 16 21 C -0.53 -30.53 10.04 67.95 0.68 -29.85 16 22 H 0.06 3.87 8.03 -2.91 -0.02 3.85 16 23 C 0.05 2.68 5.50 84.86 0.47 3.15 16 24 N -0.92 -55.86 13.97 21.65 0.30 -55.56 16 25 Si 0.91 45.27 27.74 68.60 1.90 47.18 16 26 H -0.26 -12.81 7.11 99.48 0.71 -12.10 16 27 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 28 H -0.24 -11.75 6.74 99.48 0.67 -11.08 16 29 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.41 8.59 7.67 -92.71 -0.71 7.88 16 35 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.09 1.05 7.00 -2.39 -0.02 1.03 16 37 H 0.11 0.21 8.14 -2.39 -0.02 0.20 16 38 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 39 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.06 0.86 7.93 -2.39 -0.02 0.84 16 41 H 0.10 0.48 8.14 -2.38 -0.02 0.46 16 42 H 0.42 6.79 8.60 -92.71 -0.80 5.99 16 43 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 44 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 45 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -84.61 392.53 0.32 -84.29 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -0.53 Total: 19.01 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: 7.01 Total: 14.49 kcal Atomic # 7 Polarization: -94.08 SS G_CDS: -6.88 Total: -100.96 kcal Atomic # 8 Polarization: -53.89 SS G_CDS: -0.14 Total: -54.04 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.90 Total: 47.18 kcal Atomic # 16 Polarization: -8.92 SS G_CDS: -1.05 Total: -9.97 kcal Total: -84.61 0.32 -84.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721933670.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.129 kcal (2) G-P(sol) polarization free energy of solvation -84.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds