Wall clock time and date at job start Wed Apr 1 2020 02:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47221 * 2 1 4 4 C 1.52999 * 109.47135 * 119.99778 * 2 1 3 5 5 N 1.46495 * 109.47401 * 174.99814 * 4 2 1 6 6 C 1.34779 * 120.00299 * 180.02562 * 5 4 2 7 7 O 1.21283 * 119.99753 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99843 * 180.02562 * 6 5 4 9 9 S 1.81001 * 109.46896 * 179.97438 * 8 6 5 10 10 C 1.76192 * 100.00053 * 179.97438 * 9 8 6 11 11 H 1.08000 * 120.00436 * 0.02562 * 10 9 8 12 12 C 1.38805 * 119.99929 * 179.97438 * 10 9 8 13 13 N 1.31624 * 120.00253 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99752 * 179.72153 * 12 10 9 15 15 H 1.48506 * 109.46826 * 60.00667 * 14 12 10 16 16 H 1.48497 * 109.47051 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47422 * 300.00475 * 14 12 10 18 18 N 1.46495 * 109.47302 * 239.99938 * 2 1 3 19 19 C 1.34771 * 119.99867 * 84.99890 * 18 2 1 20 20 O 1.21280 * 120.00502 * 359.97438 * 19 18 2 21 21 C 1.50705 * 120.00148 * 180.02562 * 19 18 2 22 22 H 1.08995 * 109.39913 * 60.16592 * 21 19 18 23 23 C 1.53068 * 109.40441 * 180.02562 * 21 19 18 24 24 C 1.53346 * 108.42403 * 169.02609 * 23 21 19 25 25 C 1.52921 * 108.67525 * 292.46704 * 24 23 21 26 26 N 1.45756 * 110.48656 * 50.75452 * 25 24 23 27 27 C 1.33349 * 124.10403 * 340.92592 * 26 25 24 28 28 O 1.21287 * 118.24021 * 182.21994 * 27 26 25 29 29 H 1.09013 * 109.47292 * 300.00167 * 1 2 3 30 30 H 1.09005 * 109.47458 * 59.99979 * 1 2 3 31 31 H 1.08999 * 109.47221 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46848 * 55.00031 * 4 2 1 33 33 H 1.09003 * 109.47502 * 295.00069 * 4 2 1 34 34 H 0.97004 * 119.99811 * 0.02562 * 5 4 2 35 35 H 1.08998 * 109.46989 * 60.00366 * 8 6 5 36 36 H 1.08996 * 109.47123 * 299.99392 * 8 6 5 37 37 H 0.97000 * 120.00481 * 179.97438 * 13 12 10 38 38 H 0.96996 * 120.00186 * 265.00511 * 18 2 1 39 39 H 1.08996 * 109.67026 * 288.76011 * 23 21 19 40 40 H 1.09000 * 109.67440 * 49.25667 * 23 21 19 41 41 H 1.09002 * 109.60325 * 52.22997 * 24 23 21 42 42 H 1.08999 * 109.59952 * 172.55034 * 24 23 21 43 43 H 1.09000 * 109.29643 * 171.06533 * 25 24 23 44 44 H 1.08997 * 109.30091 * 290.65189 * 25 24 23 45 45 H 0.97003 * 117.94455 * 160.92158 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1729 -1.4292 2.1908 7 8 3.5698 -1.8841 3.1396 8 6 5.6749 -1.5368 2.1306 9 16 6.2782 -2.3901 3.6085 10 6 8.0099 -2.3774 3.2837 11 1 8.3862 -1.9241 2.3785 12 6 8.8905 -2.9489 4.1917 13 7 8.4320 -3.5008 5.2951 14 14 10.7258 -2.9422 3.8435 15 1 11.2005 -1.5407 3.7169 16 1 11.4437 -3.6094 4.9592 17 1 10.9923 -3.6714 2.5777 18 7 2.0183 -0.6906 -1.1961 19 6 2.1470 -0.0183 -2.3570 20 8 1.8581 1.1584 -2.4117 21 6 2.6489 -0.7288 -3.5877 22 1 1.9736 -1.5484 -3.8332 23 6 2.7004 0.2563 -4.7581 24 6 3.4642 -0.4028 -5.9130 25 6 4.9280 -0.5664 -5.5017 26 7 5.0226 -1.2145 -4.1996 27 6 4.0209 -1.2784 -3.3217 28 8 4.2291 -1.8089 -2.2510 29 1 -0.3634 0.5139 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6053 -1.7198 1.2952 33 1 1.7516 -0.1583 2.1370 34 1 3.9824 -0.4622 0.4319 35 1 6.1092 -0.5381 2.0855 36 1 5.9636 -2.0992 1.2427 37 1 9.0474 -3.9005 5.9295 38 1 2.2490 -1.6317 -1.1526 39 1 1.6872 0.4982 -5.0790 40 1 3.2147 1.1664 -4.4494 41 1 3.0326 -1.3808 -6.1259 42 1 3.3994 0.2266 -6.8006 43 1 5.4452 -1.1735 -6.2447 44 1 5.3988 0.4151 -5.4473 45 1 5.8672 -1.6251 -3.9565 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721943195.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:23 Heat of formation + Delta-G solvation = -121.456356 kcal Electronic energy + Delta-G solvation = -27872.812060 eV Core-core repulsion = 23822.932351 eV Total energy + Delta-G solvation = -4049.879709 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.33872 -39.62766 -38.87954 -37.07462 -36.33283 -33.67667 -33.44441 -32.37721 -31.44507 -30.14880 -29.24797 -26.01909 -25.55442 -25.25576 -23.25578 -22.12644 -20.83262 -20.20308 -19.60870 -18.12912 -17.74967 -17.49015 -17.01806 -16.45687 -16.13947 -15.86080 -15.42652 -15.08950 -14.89382 -14.75879 -14.63943 -14.33630 -14.09121 -13.96364 -13.76496 -13.40055 -13.01026 -12.81731 -12.78520 -12.53216 -12.44349 -12.20166 -11.93030 -11.84746 -11.68440 -11.56011 -11.22181 -11.00146 -10.99095 -10.72425 -10.32056 -10.09120 -9.77090 -9.54033 -9.39633 -9.27326 -9.01378 -8.79909 -8.17135 -6.43205 -6.16409 -3.86019 1.97590 2.29959 2.79683 2.94010 3.12278 3.20522 3.26742 3.30550 3.35776 3.81095 3.95598 4.06921 4.17472 4.21433 4.25681 4.46394 4.63341 4.70782 4.77881 4.90878 5.01890 5.05953 5.18395 5.18809 5.25175 5.27406 5.40187 5.42109 5.46920 5.60093 5.68875 5.74129 5.82648 5.95647 6.00892 6.23331 6.26584 6.29614 6.69475 6.80263 7.24095 7.64569 7.71943 7.81246 7.91679 8.40546 8.70860 9.28640 10.91062 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011257 B = 0.002791 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.754088 B =10030.145058 C =12210.861324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.129 3.871 3 H 0.094 0.906 4 C 0.114 3.886 5 N -0.735 5.735 6 C 0.534 3.466 7 O -0.521 6.521 8 C -0.151 4.151 9 S -0.060 6.060 10 C -0.534 4.534 11 H 0.071 0.929 12 C 0.073 3.927 13 N -0.869 5.869 14 Si 0.918 3.082 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 N -0.709 5.709 19 C 0.532 3.468 20 O -0.536 6.536 21 C -0.128 4.128 22 H 0.130 0.870 23 C -0.105 4.105 24 C -0.138 4.138 25 C 0.106 3.894 26 N -0.714 5.714 27 C 0.526 3.474 28 O -0.536 6.536 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.401 0.599 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.268 0.732 38 H 0.412 0.588 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.965 7.449 -26.569 30.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.025 3.975 3 H 0.112 0.888 4 C -0.010 4.010 5 N -0.390 5.390 6 C 0.320 3.680 7 O -0.395 6.395 8 C -0.302 4.302 9 S 0.166 5.834 10 C -0.683 4.683 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.504 5.504 14 Si 0.745 3.255 15 H -0.200 1.200 16 H -0.208 1.208 17 H -0.200 1.200 18 N -0.362 5.362 19 C 0.317 3.683 20 O -0.413 6.413 21 C -0.152 4.152 22 H 0.148 0.852 23 C -0.143 4.143 24 C -0.176 4.176 25 C -0.018 4.018 26 N -0.367 5.367 27 C 0.311 3.689 28 O -0.412 6.412 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.236 0.764 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.078 0.922 38 H 0.250 0.750 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.093 0.907 42 H 0.109 0.891 43 H 0.099 0.901 44 H 0.088 0.912 45 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -15.252 7.254 -24.323 29.612 hybrid contribution 2.562 0.049 -1.769 3.114 sum -12.690 7.302 -26.092 29.919 Atomic orbital electron populations 1.22102 0.93976 1.02699 1.03046 1.21281 0.94892 0.97828 0.83529 0.88772 1.21577 0.81479 1.01208 0.96785 1.45945 1.06611 1.61834 1.24605 1.20272 0.89509 0.76635 0.81540 1.90692 1.69907 1.46267 1.32683 1.23511 0.93626 1.05524 1.07555 1.85329 1.04453 1.73259 1.20325 1.22837 0.91636 1.44199 1.09579 0.91040 1.24984 0.99518 0.94608 0.94476 1.70009 1.35439 1.35542 1.09412 0.86233 0.82881 0.78433 0.77995 1.19969 1.20834 1.19969 1.46165 1.65851 1.15216 1.08964 1.19787 0.77692 0.86853 0.84006 1.90721 1.50443 1.15398 1.84728 1.21492 0.95949 1.01326 0.96411 0.85236 1.21520 1.02687 0.97811 0.92287 1.21928 0.94292 1.02351 0.99034 1.21472 0.97853 0.98358 0.84159 1.45372 1.15300 1.58234 1.17809 1.19550 0.86081 0.79269 0.84040 1.90832 1.82602 1.44358 1.23456 0.91000 0.91657 0.91970 0.91008 0.90035 0.76443 0.89463 0.89086 0.92186 0.74995 0.89765 0.89779 0.90724 0.89087 0.90112 0.91214 0.75737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 9.48 37.16 0.35 -0.96 16 2 C 0.13 1.30 2.73 -67.94 -0.19 1.11 16 3 H 0.09 1.05 7.58 -51.93 -0.39 0.66 16 4 C 0.11 1.40 5.23 -4.04 -0.02 1.38 16 5 N -0.73 -11.03 5.39 -60.29 -0.32 -11.36 16 6 C 0.53 10.72 7.85 -10.98 -0.09 10.63 16 7 O -0.52 -12.29 15.86 5.55 0.09 -12.21 16 8 C -0.15 -3.31 6.16 36.01 0.22 -3.09 16 9 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 10 C -0.53 -15.71 9.50 30.94 0.29 -15.42 16 11 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 12 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 13 N -0.87 -26.74 13.22 55.49 0.73 -26.01 16 14 Si 0.92 21.87 29.55 -169.99 -5.02 16.85 16 15 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 18 N -0.71 -7.03 4.00 -53.81 -0.22 -7.25 16 19 C 0.53 5.43 7.03 -10.99 -0.08 5.36 16 20 O -0.54 -6.88 15.46 5.56 0.09 -6.79 16 21 C -0.13 -0.94 2.78 -93.14 -0.26 -1.20 16 22 H 0.13 0.68 8.14 -51.93 -0.42 0.26 16 23 C -0.11 -0.59 4.78 -26.52 -0.13 -0.72 16 24 C -0.14 -0.43 6.02 -26.59 -0.16 -0.59 16 25 C 0.11 0.39 7.17 -4.48 -0.03 0.35 16 26 N -0.71 -4.75 5.45 -61.39 -0.33 -5.09 16 27 C 0.53 4.79 7.28 -11.87 -0.09 4.70 16 28 O -0.54 -6.79 15.53 5.55 0.09 -6.70 16 29 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.40 5.61 8.14 -40.82 -0.33 5.27 16 35 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 36 H 0.09 1.90 8.14 -51.92 -0.42 1.48 16 37 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 38 H 0.41 4.19 7.23 -40.82 -0.30 3.90 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.61 7.73 -51.93 -0.40 0.21 16 41 H 0.07 0.20 8.12 -51.93 -0.42 -0.22 16 42 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 43 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 44 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 45 H 0.41 2.66 8.80 -40.82 -0.36 2.30 16 LS Contribution 389.28 15.07 5.87 5.87 Total: -1.00 -38.00 389.28 -8.33 -46.33 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -6.82 Total: 6.67 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -0.26 Total: 3.60 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: -0.14 Total: -49.70 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: 0.26 Total: -25.70 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -38.00 -8.33 -46.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721943195.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.126 kcal (2) G-P(sol) polarization free energy of solvation -37.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds