Wall clock time and date at job start Wed Apr 1 2020 02:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.47243 * 2 1 4 4 C 1.34779 * 120.00073 * 179.97438 * 3 2 1 5 5 O 1.21275 * 119.99898 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99711 * 179.97438 * 4 3 2 7 7 C 1.50700 * 109.47060 * 180.02562 * 6 4 3 8 8 O 1.21280 * 119.99806 * 0.02562 * 7 6 4 9 9 N 1.34773 * 120.00416 * 180.02562 * 7 6 4 10 10 C 1.46493 * 120.00444 * 179.97438 * 9 7 6 11 11 C 1.52994 * 109.47555 * 184.96598 * 10 9 7 12 12 H 1.09005 * 112.73846 * 45.08673 * 11 10 9 13 13 C 1.53503 * 113.46890 * 274.26728 * 11 10 9 14 14 C 1.53758 * 83.25778 * 218.97943 * 13 11 10 15 15 N 1.47063 * 113.47202 * 175.82929 * 11 10 9 16 16 C 1.34776 * 136.05909 * 321.86865 * 15 11 10 17 17 O 1.21290 * 119.99662 * 354.96232 * 16 15 11 18 18 C 1.50700 * 120.00510 * 174.68427 * 16 15 11 19 19 S 1.80997 * 109.47357 * 180.27227 * 18 16 15 20 20 C 1.76202 * 99.99829 * 180.02562 * 19 18 16 21 21 H 1.07996 * 120.00115 * 359.97438 * 20 19 18 22 22 C 1.38796 * 119.99772 * 180.02562 * 20 19 18 23 23 N 1.31636 * 120.00229 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00152 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46925 * 59.99538 * 24 22 20 26 26 H 1.48495 * 109.47238 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.46815 * 299.99660 * 24 22 20 28 28 H 1.08997 * 109.46767 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47033 * 300.00231 * 1 2 3 30 30 H 1.09000 * 109.47109 * 60.00575 * 1 2 3 31 31 H 1.09005 * 109.47521 * 239.99657 * 2 1 3 32 32 H 1.08996 * 109.47171 * 119.99939 * 2 1 3 33 33 H 0.97001 * 119.99714 * 359.97438 * 3 2 1 34 34 H 1.09001 * 109.47110 * 60.00436 * 6 4 3 35 35 H 1.08996 * 109.47533 * 300.00337 * 6 4 3 36 36 H 0.97008 * 119.99690 * 0.02562 * 9 7 6 37 37 H 1.09001 * 109.46924 * 64.96628 * 10 9 7 38 38 H 1.09001 * 109.47249 * 304.96677 * 10 9 7 39 39 H 1.08998 * 114.20351 * 332.73739 * 13 11 10 40 40 H 1.08995 * 114.20429 * 105.36185 * 13 11 10 41 41 H 1.08999 * 113.46187 * 271.50582 * 14 13 11 42 42 H 1.08996 * 113.55058 * 140.98238 * 14 13 11 43 43 H 1.08992 * 109.47185 * 300.27761 * 18 16 15 44 44 H 1.09006 * 109.46626 * 60.27759 * 18 16 15 45 45 H 0.97000 * 120.00289 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1315 0.7057 0.0015 6 6 3.8457 3.0483 -0.0001 7 6 5.3527 3.0484 0.0001 8 8 5.9591 1.9981 0.0001 9 7 6.0266 4.2155 0.0001 10 6 7.4916 4.2156 0.0008 11 6 8.0016 5.6526 0.1256 12 1 7.4725 6.2226 0.8894 13 6 8.1072 6.3829 -1.2205 14 6 9.3938 6.9553 -0.6031 15 7 9.4652 5.7475 0.2330 16 6 10.4418 5.0416 0.8367 17 8 10.1582 4.1103 1.5602 18 6 11.8862 5.4055 0.6081 19 16 12.9481 4.2762 1.5424 20 6 14.5317 4.9130 1.1049 21 1 14.6080 5.7600 0.4393 22 6 15.6810 4.3253 1.6149 23 7 15.5880 3.2925 2.4258 24 14 17.3599 5.0008 1.1517 25 1 17.4596 6.4181 1.5837 26 1 18.4170 4.2034 1.8239 27 1 17.5377 4.9183 -0.3203 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.3880 2.1185 -0.0004 34 1 3.4820 3.5627 0.8895 35 1 3.4828 3.5617 -0.8904 36 1 5.5416 5.0556 0.0005 37 1 7.8553 3.7805 -0.9301 38 1 7.8546 3.6268 0.8433 39 1 8.2714 5.7252 -2.0740 40 1 7.3245 7.1221 -1.3905 41 1 9.2316 7.8695 -0.0320 42 1 10.2166 7.0413 -1.3127 43 1 12.1171 5.3261 -0.4542 44 1 12.0605 6.4282 0.9424 45 1 16.3912 2.8821 2.7825 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001722007735.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:45 Heat of formation + Delta-G solvation = -66.779466 kcal Electronic energy + Delta-G solvation = -26407.033818 eV Core-core repulsion = 22359.525077 eV Total energy + Delta-G solvation = -4047.508741 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.71671 -40.26386 -38.82577 -37.50478 -35.58421 -34.65161 -32.40882 -32.04950 -30.79837 -30.08364 -28.29776 -27.93012 -25.45588 -23.84392 -23.08616 -22.14989 -21.36297 -20.52196 -18.93181 -17.76684 -17.59382 -17.34909 -16.63011 -16.38321 -16.09402 -15.97601 -15.41503 -15.28152 -14.95999 -14.78395 -14.42207 -14.27389 -13.92695 -13.72748 -13.56342 -13.52524 -12.93958 -12.85728 -12.69283 -12.49973 -12.45938 -12.29023 -12.04708 -11.91200 -11.82892 -11.64698 -11.03465 -11.02177 -10.78379 -10.74941 -10.35555 -9.81475 -9.60142 -9.41115 -9.39775 -9.11292 -9.04066 -8.66500 -8.21755 -6.48324 -6.19115 -3.90303 2.35724 2.41031 2.60421 2.75143 3.02583 3.20997 3.25075 3.29755 3.33262 3.59762 4.05603 4.19995 4.22102 4.47310 4.55723 4.62663 4.62763 4.68908 4.79502 4.81151 4.86065 4.91000 4.95008 5.15597 5.16108 5.30855 5.37360 5.44743 5.46160 5.53541 5.58111 5.67259 5.83594 5.86138 5.95380 6.06820 6.08991 6.14827 6.31330 7.10943 7.30593 7.60969 7.82581 7.96110 8.18221 8.36907 8.53768 9.25553 10.88221 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.020411 B = 0.001751 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.469234 B =15989.132659 C =17132.016979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.114 3.886 3 N -0.738 5.738 4 C 0.508 3.492 5 O -0.488 6.488 6 C -0.163 4.163 7 C 0.508 3.492 8 O -0.486 6.486 9 N -0.730 5.730 10 C 0.113 3.887 11 C 0.124 3.876 12 H 0.094 0.906 13 C -0.152 4.152 14 C 0.101 3.899 15 N -0.648 5.648 16 C 0.560 3.440 17 O -0.507 6.507 18 C -0.144 4.144 19 S -0.058 6.058 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.398 0.602 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.396 0.604 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.709 8.282 -9.114 34.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.009 4.009 3 N -0.394 5.394 4 C 0.292 3.708 5 O -0.359 6.359 6 C -0.206 4.206 7 C 0.291 3.709 8 O -0.357 6.357 9 N -0.385 5.385 10 C -0.011 4.011 11 C 0.019 3.981 12 H 0.112 0.888 13 C -0.190 4.190 14 C -0.022 4.022 15 N -0.388 5.388 16 C 0.350 3.650 17 O -0.380 6.380 18 C -0.294 4.294 19 S 0.168 5.832 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.232 0.768 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.230 0.770 37 H 0.090 0.910 38 H 0.108 0.892 39 H 0.116 0.884 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.100 0.900 43 H 0.108 0.892 44 H 0.106 0.894 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -31.739 5.081 -7.793 33.074 hybrid contribution 0.808 2.520 -1.043 2.844 sum -30.931 7.601 -8.836 33.054 Atomic orbital electron populations 1.21999 0.94427 1.03314 1.02413 1.21280 0.94088 0.82942 1.02619 1.46037 1.06863 1.08904 1.77590 1.20035 0.82332 0.90900 0.77570 1.90910 1.54340 1.45409 1.45272 1.21568 0.95289 0.97210 1.06543 1.19918 0.88897 0.84117 0.77998 1.90928 1.69183 1.30370 1.45252 1.45786 1.07180 1.08263 1.77286 1.21559 0.78838 0.96461 1.04213 1.22747 0.83021 0.95587 0.96718 0.88815 1.23638 0.98223 1.00315 0.96797 1.22928 0.97911 0.88936 0.92436 1.49767 1.05804 1.28948 1.54268 1.20028 0.85859 0.81442 0.77663 1.90741 1.83059 1.28838 1.35402 1.23466 0.93912 1.06106 1.05941 1.85462 0.97860 1.39485 1.60373 1.22814 0.91496 1.19572 1.34609 0.90986 1.24992 0.99214 0.94728 0.94594 1.70012 1.29765 1.20669 1.29756 0.86220 0.81618 0.78881 0.78748 1.19954 1.20788 1.19928 0.90761 0.91976 0.92013 0.91490 0.91452 0.76839 0.86093 0.86122 0.77001 0.90955 0.89222 0.88409 0.89280 0.89747 0.89985 0.89233 0.89379 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.52 10.03 37.16 0.37 -0.15 16 2 C 0.11 0.73 6.39 -4.04 -0.03 0.71 16 3 N -0.74 -4.50 5.56 -60.29 -0.33 -4.84 16 4 C 0.51 5.11 7.82 -10.98 -0.09 5.03 16 5 O -0.49 -8.05 14.18 -18.95 -0.27 -8.32 16 6 C -0.16 -1.02 6.19 -29.03 -0.18 -1.20 16 7 C 0.51 5.93 7.82 -10.99 -0.09 5.85 16 8 O -0.49 -8.99 14.18 -18.96 -0.27 -9.26 16 9 N -0.73 -6.52 5.55 -60.30 -0.33 -6.86 16 10 C 0.11 1.44 5.47 -4.05 -0.02 1.41 16 11 C 0.12 1.25 4.06 -72.39 -0.29 0.96 16 12 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 13 C -0.15 -1.02 8.03 -26.08 -0.21 -1.23 16 14 C 0.10 0.90 8.43 -8.36 -0.07 0.83 16 15 N -0.65 -9.09 3.56 -177.26 -0.63 -9.73 16 16 C 0.56 11.09 7.97 -10.99 -0.09 11.01 16 17 O -0.51 -12.20 15.47 5.55 0.09 -12.11 16 18 C -0.14 -3.03 5.99 36.01 0.22 -2.81 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 20 C -0.54 -15.57 9.50 30.94 0.29 -15.28 16 21 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 22 C 0.07 2.15 5.49 -17.43 -0.10 2.05 16 23 N -0.87 -26.64 13.22 55.49 0.73 -25.91 16 24 Si 0.92 21.69 29.55 -169.99 -5.02 16.67 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 28 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.40 0.93 8.47 -40.82 -0.35 0.59 16 34 H 0.12 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.12 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.40 1.73 8.48 -40.82 -0.35 1.39 16 37 H 0.07 1.01 7.89 -51.93 -0.41 0.60 16 38 H 0.09 1.58 7.15 -51.93 -0.37 1.21 16 39 H 0.10 0.72 7.95 -51.93 -0.41 0.31 16 40 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 44 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 45 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 398.25 15.07 6.00 6.00 Total: -1.00 -43.91 398.25 -9.45 -53.36 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -6.93 Total: -2.35 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: -0.27 Total: 7.18 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -0.57 Total: -47.33 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.45 Total: -29.68 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -43.91 -9.45 -53.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722007735.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.416 kcal (2) G-P(sol) polarization free energy of solvation -43.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds