Wall clock time and date at job start Wed Apr 1 2020 01:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46773 * 2 1 4 4 C 1.52995 * 109.47548 * 240.00082 * 2 1 3 5 5 C 1.53000 * 109.47400 * 174.99786 * 4 2 1 6 6 N 1.46895 * 109.47515 * 179.97438 * 5 4 2 7 7 C 1.46901 * 111.00415 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.52161 * 324.87964 * 7 6 5 9 9 C 1.53240 * 109.52622 * 204.68359 * 7 6 5 10 10 C 1.53217 * 108.58166 * 184.49211 * 9 7 6 11 11 C 1.50590 * 109.17966 * 55.57333 * 10 9 7 12 12 O 1.21230 * 119.35847 * 150.93353 * 11 10 9 13 13 N 1.34145 * 121.28034 * 330.96202 * 11 10 9 14 14 C 1.34135 * 122.58821 * 0.51547 * 13 11 10 15 15 O 1.21225 * 119.36204 * 179.45669 * 14 13 11 16 16 N 1.46500 * 109.47146 * 119.99512 * 2 1 3 17 17 C 1.34779 * 120.00169 * 275.00181 * 16 2 1 18 18 O 1.21282 * 119.99922 * 0.02562 * 17 16 2 19 19 C 1.50699 * 120.00037 * 180.02562 * 17 16 2 20 20 S 1.81000 * 109.46881 * 180.02562 * 19 17 16 21 21 C 1.76206 * 99.99929 * 180.02562 * 20 19 17 22 22 H 1.07998 * 119.99720 * 359.97438 * 21 20 19 23 23 C 1.38796 * 119.99847 * 180.02562 * 21 20 19 24 24 N 1.31638 * 119.99705 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 120.00469 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46939 * 90.00148 * 25 23 21 27 27 H 1.48496 * 109.47561 * 210.00294 * 25 23 21 28 28 H 1.48498 * 109.46932 * 330.00626 * 25 23 21 29 29 H 1.09001 * 109.46947 * 60.00474 * 1 2 3 30 30 H 1.09006 * 109.46479 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47133 * 300.00242 * 1 2 3 32 32 H 1.09009 * 109.46952 * 294.99621 * 4 2 1 33 33 H 1.08996 * 109.47558 * 54.99452 * 4 2 1 34 34 H 1.09003 * 109.47195 * 300.00168 * 5 4 2 35 35 H 1.09005 * 109.47009 * 59.99561 * 5 4 2 36 36 H 1.00907 * 111.00274 * 303.96036 * 6 5 4 37 37 H 1.08994 * 109.62541 * 304.21070 * 9 7 6 38 38 H 1.09003 * 109.61909 * 64.75710 * 9 7 6 39 39 H 1.09006 * 109.48974 * 295.68081 * 10 9 7 40 40 H 1.08995 * 109.53710 * 175.49733 * 10 9 7 41 41 H 0.96996 * 118.70700 * 180.54662 * 13 11 10 42 42 H 0.96996 * 119.99986 * 95.00778 * 16 2 1 43 43 H 1.09000 * 109.47247 * 60.00371 * 19 17 16 44 44 H 1.09001 * 109.47358 * 299.99798 * 19 17 16 45 45 H 0.96996 * 119.99710 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6132 -1.3136 6 7 4.0548 -1.3061 -2.5127 7 6 5.5183 -1.2225 -2.6082 8 1 5.8536 -0.2577 -2.2277 9 6 5.9455 -1.3738 -4.0720 10 6 7.4762 -1.3965 -4.1340 11 6 7.9915 -2.4914 -3.2377 12 8 9.0410 -3.0352 -3.5067 13 7 7.3114 -2.8770 -2.1476 14 6 6.1395 -2.3276 -1.7953 15 8 5.5697 -2.7280 -0.8031 16 7 2.0184 -0.6905 1.1962 17 6 2.1471 -0.0181 2.3572 18 8 1.8581 1.1586 2.4117 19 6 2.6499 -0.7283 3.5875 20 16 2.7099 0.4347 4.9732 21 6 3.3147 -0.6301 6.2403 22 1 3.5247 -1.6663 6.0201 23 6 3.5200 -0.1372 7.5214 24 7 3.9713 -0.9328 8.4681 25 14 3.1560 1.6549 7.9024 26 1 1.7449 1.7902 8.3447 27 1 4.0605 2.1251 8.9822 28 1 3.3732 2.4741 6.6830 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.7518 -1.7716 -1.2055 33 1 1.6055 -0.2618 -2.1369 34 1 3.8533 0.4371 -1.3572 35 1 3.9996 -1.0726 -0.4258 36 1 3.7454 -2.2665 -2.5271 37 1 5.5492 -2.3059 -4.4746 38 1 5.5681 -0.5318 -4.6523 39 1 7.8681 -0.4363 -3.7983 40 1 7.7968 -1.5837 -5.1588 41 1 7.6817 -3.5806 -1.5921 42 1 2.2492 -1.6316 1.1527 43 1 3.6493 -1.1200 3.3980 44 1 1.9778 -1.5506 3.8327 45 1 4.1152 -0.5883 9.3634 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732672846.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:00 Heat of formation + Delta-G solvation = -120.290102 kcal Electronic energy + Delta-G solvation = -27204.605166 eV Core-core repulsion = 23154.776030 eV Total energy + Delta-G solvation = -4049.829136 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.03007 -39.66083 -39.40497 -37.27663 -36.18850 -35.31928 -33.39383 -32.42787 -31.75965 -29.65081 -28.57680 -26.86386 -25.60052 -24.36003 -23.53446 -22.83258 -21.46028 -20.38378 -19.87384 -18.22424 -17.92498 -17.84393 -16.84531 -16.61782 -16.33319 -16.06154 -15.44083 -15.25836 -15.04268 -14.98143 -14.93341 -14.54462 -14.38237 -13.82821 -13.59037 -13.39457 -13.30288 -12.98404 -12.86090 -12.78418 -12.51854 -12.18410 -12.01556 -11.92854 -11.62658 -11.30423 -11.25061 -11.01794 -11.00010 -10.97790 -10.79818 -10.73857 -10.57530 -9.84726 -9.47088 -9.13564 -8.99859 -8.91031 -8.48759 -6.90234 -6.27781 -3.99252 0.95169 2.21589 2.24320 2.79345 3.00945 3.31590 3.32227 3.35591 3.36171 3.50832 3.69118 3.95459 4.00103 4.30144 4.33946 4.45195 4.53666 4.66417 4.72532 4.78495 4.93128 5.00363 5.11154 5.13546 5.23252 5.26423 5.32410 5.38828 5.41783 5.52201 5.57810 5.67725 5.77238 5.79898 5.98862 6.05442 6.17076 6.20231 6.33289 6.62736 6.66606 6.83917 7.28439 7.66012 7.95466 8.43357 8.53489 9.18363 10.81566 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011703 B = 0.002377 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.924979 B =11774.390068 C =13562.690682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.145 3.855 3 H 0.088 0.912 4 C -0.121 4.121 5 C 0.046 3.954 6 N -0.657 5.657 7 C 0.068 3.932 8 H 0.124 0.876 9 C -0.111 4.111 10 C -0.143 4.143 11 C 0.523 3.477 12 O -0.504 6.504 13 N -0.674 5.674 14 C 0.490 3.510 15 O -0.491 6.491 16 N -0.732 5.732 17 C 0.532 3.468 18 O -0.521 6.521 19 C -0.125 4.125 20 S -0.142 6.142 21 C -0.520 4.520 22 H 0.088 0.912 23 C 0.095 3.905 24 N -0.881 5.881 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.275 1.275 28 H -0.235 1.235 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.057 0.943 36 H 0.348 0.652 37 H 0.080 0.920 38 H 0.104 0.896 39 H 0.114 0.886 40 H 0.118 0.882 41 H 0.411 0.589 42 H 0.399 0.601 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.534 -1.864 -30.891 30.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.039 3.961 3 H 0.107 0.893 4 C -0.159 4.159 5 C -0.083 4.083 6 N -0.287 5.287 7 C -0.046 4.046 8 H 0.142 0.858 9 C -0.149 4.149 10 C -0.183 4.183 11 C 0.312 3.688 12 O -0.377 6.377 13 N -0.340 5.340 14 C 0.277 3.723 15 O -0.362 6.362 16 N -0.386 5.386 17 C 0.318 3.682 18 O -0.396 6.396 19 C -0.275 4.275 20 S 0.084 5.916 21 C -0.668 4.668 22 H 0.106 0.894 23 C -0.114 4.114 24 N -0.518 5.518 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.200 1.200 28 H -0.159 1.159 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.167 0.833 37 H 0.098 0.902 38 H 0.123 0.877 39 H 0.132 0.868 40 H 0.137 0.863 41 H 0.251 0.749 42 H 0.233 0.767 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.132 0.301 -30.771 30.794 hybrid contribution 0.881 -2.293 1.464 2.860 sum 2.013 -1.992 -29.307 29.444 Atomic orbital electron populations 1.22168 0.95199 1.02081 1.02660 1.20853 0.94069 0.97626 0.83528 0.89347 1.21831 0.94704 1.01457 0.97955 1.22236 0.95450 0.99369 0.91214 1.60805 1.05357 1.21336 1.41213 1.21956 0.89845 0.97276 0.95526 0.85835 1.21733 0.92939 1.05481 0.94760 1.21973 0.96984 0.98183 1.01192 1.21089 0.83602 0.83700 0.80389 1.90812 1.22015 1.53911 1.70912 1.45015 1.22673 1.38985 1.27352 1.22425 0.80154 0.83981 0.85783 1.90832 1.59899 1.60391 1.25102 1.46105 1.69010 1.14003 1.09509 1.20248 0.76840 0.87198 0.83885 1.90688 1.48630 1.15747 1.84491 1.23287 1.04466 1.03422 0.96362 1.84741 1.87092 1.16641 1.03123 1.22326 1.50440 0.98749 0.95290 0.89431 1.24725 0.93404 0.98303 0.94955 1.69945 1.43523 1.35789 1.02514 0.86724 0.79297 0.85235 0.80525 1.19211 1.19978 1.15923 0.91821 0.92568 0.91695 0.91364 0.89545 0.90486 0.92491 0.83297 0.90162 0.87704 0.86761 0.86348 0.74933 0.76735 0.88588 0.88603 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.48 37.16 0.35 -1.26 16 2 C 0.14 1.49 2.57 -67.93 -0.17 1.31 16 3 H 0.09 1.07 7.58 -51.93 -0.39 0.68 16 4 C -0.12 -0.86 5.01 -26.73 -0.13 -0.99 16 5 C 0.05 0.35 5.24 -3.83 -0.02 0.33 16 6 N -0.66 -3.70 6.12 -107.87 -0.66 -4.36 16 7 C 0.07 0.33 2.72 -68.79 -0.19 0.14 16 8 H 0.12 0.53 7.80 -51.93 -0.41 0.12 16 9 C -0.11 -0.26 5.69 -26.50 -0.15 -0.41 16 10 C -0.14 -0.37 6.07 -27.82 -0.17 -0.54 16 11 C 0.52 3.41 7.74 -11.32 -0.09 3.33 16 12 O -0.50 -5.23 17.88 5.60 0.10 -5.13 16 13 N -0.67 -4.56 5.09 -11.75 -0.06 -4.62 16 14 C 0.49 3.65 7.34 -11.32 -0.08 3.56 16 15 O -0.49 -5.48 15.74 5.61 0.09 -5.39 16 16 N -0.73 -9.12 4.53 -53.81 -0.24 -9.36 16 17 C 0.53 9.38 7.81 -10.99 -0.09 9.29 16 18 O -0.52 -11.02 15.52 5.56 0.09 -10.94 16 19 C -0.12 -2.46 6.16 36.01 0.22 -2.24 16 20 S -0.14 -3.65 18.55 -107.50 -1.99 -5.64 16 21 C -0.52 -15.21 10.04 30.94 0.31 -14.89 16 22 H 0.09 2.68 8.03 -52.49 -0.42 2.26 16 23 C 0.09 2.80 5.50 -17.43 -0.10 2.71 16 24 N -0.88 -26.90 13.97 55.49 0.78 -26.13 16 25 Si 0.86 21.99 27.74 -169.99 -4.72 17.27 16 26 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.45 8.14 -51.92 -0.42 0.02 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.60 8.06 -51.93 -0.42 0.18 16 35 H 0.06 0.57 6.31 -51.93 -0.33 0.24 16 36 H 0.35 1.99 8.33 -39.29 -0.33 1.66 16 37 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.10 0.13 8.14 -51.93 -0.42 -0.29 16 39 H 0.11 0.14 8.14 -51.93 -0.42 -0.28 16 40 H 0.12 0.19 8.14 -51.93 -0.42 -0.23 16 41 H 0.41 2.88 8.79 -40.82 -0.36 2.52 16 42 H 0.40 4.18 8.60 -40.82 -0.35 3.83 16 43 H 0.10 1.81 8.14 -51.92 -0.42 1.39 16 44 H 0.10 1.78 8.14 -51.91 -0.42 1.35 16 45 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 388.84 15.07 5.86 5.86 Total: -1.00 -37.39 388.84 -7.88 -45.26 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -6.81 Total: 2.85 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -0.30 Total: 0.33 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: -0.19 Total: -44.48 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: 0.27 Total: -21.46 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.72 Total: 17.27 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.39 -7.88 -45.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732672846.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.026 kcal (2) G-P(sol) polarization free energy of solvation -37.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds