Wall clock time and date at job start Wed Apr 1 2020 01:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46925 * 2 1 4 4 C 1.53004 * 109.46919 * 240.00690 * 2 1 3 5 5 N 1.46503 * 109.47069 * 185.00259 * 4 2 1 6 6 C 1.34776 * 120.00209 * 179.97438 * 5 4 2 7 7 O 1.21277 * 119.99988 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00021 * 179.97438 * 6 5 4 9 9 H 1.08997 * 115.55136 * 56.68110 * 8 6 5 10 10 C 1.52999 * 117.49920 * 202.35992 * 8 6 5 11 11 C 1.52989 * 60.00265 * 107.48766 * 10 8 6 12 12 H 1.09005 * 117.50084 * 107.49163 * 11 10 8 13 13 C 1.50710 * 117.49898 * 252.50965 * 11 10 8 14 14 N 1.34776 * 119.99642 * 211.21624 * 13 11 10 15 15 O 1.21277 * 119.99803 * 31.21932 * 13 11 10 16 16 N 1.46494 * 109.46984 * 120.00553 * 2 1 3 17 17 C 1.46504 * 120.00311 * 60.00228 * 16 2 1 18 18 C 1.34772 * 120.00044 * 239.99614 * 16 2 1 19 19 O 1.21283 * 120.00279 * 0.02562 * 18 16 2 20 20 C 1.50702 * 120.00121 * 180.02562 * 18 16 2 21 21 S 1.81010 * 109.46941 * 180.02562 * 20 18 16 22 22 C 1.76198 * 99.99542 * 180.02562 * 21 20 18 23 23 H 1.08002 * 120.00624 * 0.02562 * 22 21 20 24 24 C 1.38804 * 119.99598 * 179.97438 * 22 21 20 25 25 N 1.31629 * 120.00070 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99744 * 179.97438 * 24 22 21 27 27 H 1.48509 * 109.46887 * 90.00578 * 26 24 22 28 28 H 1.48503 * 109.46926 * 210.00167 * 26 24 22 29 29 H 1.48498 * 109.47387 * 330.00683 * 26 24 22 30 30 H 1.08995 * 109.47173 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47465 * 299.99621 * 1 2 3 32 32 H 1.09007 * 109.46728 * 59.99664 * 1 2 3 33 33 H 1.09004 * 109.47001 * 304.99617 * 4 2 1 34 34 H 1.08997 * 109.47533 * 64.99778 * 4 2 1 35 35 H 0.96997 * 119.99643 * 359.97438 * 5 4 2 36 36 H 1.09005 * 117.49759 * 214.98023 * 10 8 6 37 37 H 1.09002 * 117.49848 * 359.97438 * 10 8 6 38 38 H 0.96994 * 120.00600 * 0.02562 * 14 13 11 39 39 H 0.96999 * 119.99424 * 179.97438 * 14 13 11 40 40 H 1.08995 * 109.47148 * 89.99343 * 17 16 2 41 41 H 1.09000 * 109.47167 * 210.00049 * 17 16 2 42 42 H 1.09005 * 109.46733 * 329.99929 * 17 16 2 43 43 H 1.08997 * 109.47296 * 299.99825 * 20 18 16 44 44 H 1.08999 * 109.46773 * 60.00605 * 20 18 16 45 45 H 0.97000 * 119.99889 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 3.5000 -0.8263 -1.1907 6 6 4.1730 -1.4290 -2.1909 7 8 3.5699 -1.8847 -3.1392 8 6 5.6749 -1.5367 -2.1308 9 1 6.0756 -2.0344 -1.2477 10 6 6.4227 -1.7307 -3.4514 11 6 6.4900 -0.3861 -2.7247 12 1 7.4272 -0.1265 -2.2322 13 6 5.7294 0.7682 -3.3249 14 7 6.1880 2.0269 -3.1772 15 8 4.7047 0.5644 -3.9408 16 7 2.0183 -0.6907 1.1961 17 6 1.6644 -2.0934 1.4278 18 6 2.7932 -0.0359 2.0832 19 8 3.0859 1.1254 1.8917 20 6 3.2960 -0.7466 3.3134 21 16 4.3009 0.3913 4.2991 22 6 4.7448 -0.6702 5.6336 23 1 4.3955 -1.6920 5.6500 24 6 5.5444 -0.1934 6.6631 25 7 5.9705 1.0518 6.6428 26 14 6.0144 -1.3186 8.0782 27 1 7.2821 -2.0204 7.7526 28 1 6.1978 -0.5124 9.3118 29 1 4.9373 -2.3175 8.2953 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6054 -1.7197 -1.2953 34 1 1.7516 -0.1582 -2.1370 35 1 3.9824 -0.4622 -0.4320 36 1 7.3156 -2.3558 -3.4371 37 1 5.8282 -1.7809 -4.3637 38 1 7.0077 2.1899 -2.6850 39 1 5.6986 2.7698 -3.5639 40 1 2.4157 -2.7378 0.9714 41 1 1.6238 -2.2855 2.5000 42 1 0.6904 -2.3003 0.9844 43 1 2.4484 -1.0895 3.9068 44 1 3.9017 -1.6026 3.0162 45 1 6.5290 1.3850 7.3625 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734809710.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:48 Heat of formation + Delta-G solvation = -83.790709 kcal Electronic energy + Delta-G solvation = -28172.225504 eV Core-core repulsion = 24123.979100 eV Total energy + Delta-G solvation = -4048.246404 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.69583 -39.88049 -38.80932 -36.65033 -35.88851 -34.15107 -33.81419 -32.48366 -32.04235 -28.78759 -27.15142 -26.85922 -25.54220 -25.07002 -23.61978 -21.65897 -20.71734 -19.94047 -19.11863 -18.08468 -17.78123 -17.39120 -16.97628 -16.33638 -16.18394 -15.68661 -15.37271 -15.26084 -14.85490 -14.72007 -14.49944 -14.29348 -14.01125 -13.42101 -13.38611 -13.17118 -13.01227 -12.88103 -12.54199 -12.37072 -12.25583 -12.19266 -12.01242 -11.84495 -11.11690 -11.09192 -11.05090 -10.94975 -10.91875 -10.80088 -10.21343 -9.88983 -9.86007 -9.80747 -9.45728 -9.11913 -9.03404 -8.63928 -8.29630 -6.56619 -6.27367 -3.98262 2.06414 2.75952 2.80877 2.93405 3.01035 3.17946 3.21731 3.25713 3.27326 3.53739 3.66702 4.15062 4.36491 4.47684 4.53173 4.55667 4.72488 4.85621 4.98329 5.03400 5.07000 5.08247 5.11110 5.35992 5.40621 5.41615 5.42279 5.49434 5.55314 5.61767 5.70475 5.82015 5.82434 5.91475 6.02251 6.07250 6.40487 6.55388 6.60616 7.09445 7.43237 7.50548 7.54365 8.05754 8.27600 8.29640 8.44655 9.18360 10.79961 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011102 B = 0.002988 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.559097 B = 9369.814074 C =10543.517635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.124 3.876 3 H 0.108 0.892 4 C 0.116 3.884 5 N -0.721 5.721 6 C 0.549 3.451 7 O -0.525 6.525 8 C -0.158 4.158 9 H 0.139 0.861 10 C -0.112 4.112 11 C -0.178 4.178 12 H 0.132 0.868 13 C 0.538 3.462 14 N -0.850 5.850 15 O -0.526 6.526 16 N -0.618 5.618 17 C 0.078 3.922 18 C 0.532 3.468 19 O -0.517 6.517 20 C -0.150 4.150 21 S -0.061 6.061 22 C -0.536 4.536 23 H 0.072 0.928 24 C 0.075 3.925 25 N -0.867 5.867 26 Si 0.918 3.082 27 H -0.277 1.277 28 H -0.282 1.282 29 H -0.272 1.272 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.403 0.597 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.403 0.597 39 H 0.403 0.597 40 H 0.054 0.946 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.194 -4.311 -17.363 18.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.020 3.980 3 H 0.126 0.874 4 C -0.009 4.009 5 N -0.373 5.373 6 C 0.334 3.666 7 O -0.401 6.401 8 C -0.180 4.180 9 H 0.157 0.843 10 C -0.150 4.150 11 C -0.200 4.200 12 H 0.149 0.851 13 C 0.322 3.678 14 N -0.413 5.413 15 O -0.401 6.401 16 N -0.355 5.355 17 C -0.065 4.065 18 C 0.320 3.680 19 O -0.391 6.391 20 C -0.301 4.301 21 S 0.166 5.834 22 C -0.684 4.684 23 H 0.090 0.910 24 C -0.135 4.135 25 N -0.503 5.503 26 Si 0.744 3.256 27 H -0.203 1.203 28 H -0.207 1.207 29 H -0.197 1.197 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.237 0.763 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.231 0.769 39 H 0.234 0.766 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.766 -3.098 -18.608 19.066 hybrid contribution 0.503 -1.475 1.845 2.416 sum -2.263 -4.574 -16.762 17.522 Atomic orbital electron populations 1.22053 0.93871 1.02624 1.03044 1.21290 0.94812 0.98508 0.83427 0.87427 1.21682 0.80299 1.01111 0.97762 1.45766 1.07559 1.60008 1.23933 1.19279 0.87772 0.77631 0.81870 1.90673 1.69526 1.47324 1.32556 1.22286 0.92188 1.02384 1.01096 0.84346 1.23015 1.01654 0.94393 0.95916 1.22345 1.01656 0.89833 1.06170 0.85052 1.19626 0.84730 0.83930 0.79474 1.43743 1.30240 1.08088 1.59252 1.90844 1.23893 1.84552 1.40854 1.47949 1.52144 1.12630 1.22747 1.21759 1.00715 0.81456 1.02587 1.20418 0.77164 0.86774 0.83646 1.90701 1.56423 1.16379 1.75602 1.23567 1.04319 1.04671 0.97537 1.85367 1.60939 1.15279 1.21820 1.22856 1.37326 0.99661 1.08548 0.90959 1.24980 0.95079 0.95512 0.97894 1.70012 1.33124 1.14315 1.32819 0.86185 0.78912 0.79959 0.80554 1.20252 1.20739 1.19680 0.91990 0.91430 0.91161 0.91354 0.90537 0.76259 0.86754 0.86594 0.76868 0.76610 0.92754 0.90562 0.91145 0.89212 0.89278 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.17 37.16 0.34 -1.13 16 2 C 0.12 1.45 2.80 -67.93 -0.19 1.26 16 3 H 0.11 1.50 6.90 -51.93 -0.36 1.14 16 4 C 0.12 1.39 4.97 -4.04 -0.02 1.37 16 5 N -0.72 -9.29 5.39 -60.29 -0.32 -9.62 16 6 C 0.55 7.65 5.52 -10.99 -0.06 7.59 16 7 O -0.53 -9.10 16.06 -4.81 -0.08 -9.17 16 8 C -0.16 -1.66 6.18 -91.77 -0.57 -2.23 16 9 H 0.14 1.16 8.14 -51.93 -0.42 0.74 16 10 C -0.11 -1.03 9.58 -26.74 -0.26 -1.28 16 11 C -0.18 -1.62 6.19 -91.77 -0.57 -2.19 16 12 H 0.13 0.79 8.14 -51.93 -0.42 0.37 16 13 C 0.54 6.15 7.55 -10.98 -0.08 6.07 16 14 N -0.85 -6.63 8.87 31.22 0.28 -6.35 16 15 O -0.53 -8.35 15.39 -4.81 -0.07 -8.43 16 16 N -0.62 -7.97 2.24 -173.93 -0.39 -8.36 16 17 C 0.08 0.79 9.40 59.85 0.56 1.35 16 18 C 0.53 9.23 7.40 -10.99 -0.08 9.15 16 19 O -0.52 -10.78 15.19 5.55 0.08 -10.70 16 20 C -0.15 -2.86 4.71 36.01 0.17 -2.69 16 21 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 22 C -0.54 -14.71 9.50 30.94 0.29 -14.41 16 23 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 24 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 25 N -0.87 -25.36 13.22 55.49 0.73 -24.62 16 26 Si 0.92 20.77 29.55 -169.99 -5.02 15.75 16 27 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 29 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 30 H 0.06 0.50 6.66 -51.93 -0.35 0.15 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.78 7.84 -51.93 -0.41 0.38 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.40 5.33 7.87 -40.82 -0.32 5.01 16 36 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.12 1.35 7.70 -51.93 -0.40 0.95 16 38 H 0.40 2.00 8.83 -40.82 -0.36 1.64 16 39 H 0.40 2.89 8.93 -40.82 -0.36 2.53 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.77 6.44 -51.93 -0.33 0.44 16 42 H 0.07 0.57 6.43 -51.93 -0.33 0.24 16 43 H 0.09 1.61 7.40 -51.92 -0.38 1.22 16 44 H 0.09 1.56 8.11 -51.92 -0.42 1.14 16 45 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 392.49 15.07 5.91 5.91 Total: -1.00 -37.86 392.49 -8.18 -46.04 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -6.53 Total: 8.50 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -0.56 Total: 4.82 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: 0.30 Total: -48.95 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: -0.07 Total: -28.30 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -37.86 -8.18 -46.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734809710.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.748 kcal (2) G-P(sol) polarization free energy of solvation -37.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds