Wall clock time and date at job start Wed Apr 1 2020 01:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46925 * 2 1 4 4 C 1.53004 * 109.46919 * 240.00690 * 2 1 3 5 5 N 1.46503 * 109.47069 * 185.00259 * 4 2 1 6 6 C 1.34776 * 120.00209 * 179.97438 * 5 4 2 7 7 O 1.21277 * 119.99988 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00021 * 179.97438 * 6 5 4 9 9 H 1.08997 * 115.55136 * 56.68110 * 8 6 5 10 10 C 1.52999 * 117.49920 * 202.35992 * 8 6 5 11 11 C 1.52989 * 60.00265 * 107.48766 * 10 8 6 12 12 H 1.09005 * 117.50084 * 107.49163 * 11 10 8 13 13 C 1.50710 * 117.49898 * 252.50965 * 11 10 8 14 14 N 1.34776 * 119.99642 * 211.21624 * 13 11 10 15 15 O 1.21277 * 119.99803 * 31.21932 * 13 11 10 16 16 N 1.46494 * 109.46984 * 120.00553 * 2 1 3 17 17 C 1.46504 * 120.00311 * 60.00228 * 16 2 1 18 18 C 1.34772 * 120.00044 * 239.99614 * 16 2 1 19 19 O 1.21283 * 120.00279 * 0.02562 * 18 16 2 20 20 C 1.50702 * 120.00121 * 180.02562 * 18 16 2 21 21 S 1.81010 * 109.46941 * 180.02562 * 20 18 16 22 22 C 1.76198 * 99.99542 * 180.02562 * 21 20 18 23 23 H 1.08002 * 120.00624 * 0.02562 * 22 21 20 24 24 C 1.38804 * 119.99598 * 179.97438 * 22 21 20 25 25 N 1.31629 * 120.00070 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99744 * 179.97438 * 24 22 21 27 27 H 1.48509 * 109.46887 * 90.00578 * 26 24 22 28 28 H 1.48503 * 109.46926 * 210.00167 * 26 24 22 29 29 H 1.48498 * 109.47387 * 330.00683 * 26 24 22 30 30 H 1.08995 * 109.47173 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47465 * 299.99621 * 1 2 3 32 32 H 1.09007 * 109.46728 * 59.99664 * 1 2 3 33 33 H 1.09004 * 109.47001 * 304.99617 * 4 2 1 34 34 H 1.08997 * 109.47533 * 64.99778 * 4 2 1 35 35 H 0.96997 * 119.99643 * 359.97438 * 5 4 2 36 36 H 1.09005 * 117.49759 * 214.98023 * 10 8 6 37 37 H 1.09002 * 117.49848 * 359.97438 * 10 8 6 38 38 H 0.96994 * 120.00600 * 0.02562 * 14 13 11 39 39 H 0.96999 * 119.99424 * 179.97438 * 14 13 11 40 40 H 1.08995 * 109.47148 * 89.99343 * 17 16 2 41 41 H 1.09000 * 109.47167 * 210.00049 * 17 16 2 42 42 H 1.09005 * 109.46733 * 329.99929 * 17 16 2 43 43 H 1.08997 * 109.47296 * 299.99825 * 20 18 16 44 44 H 1.08999 * 109.46773 * 60.00605 * 20 18 16 45 45 H 0.97000 * 119.99889 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 3.5000 -0.8263 -1.1907 6 6 4.1730 -1.4290 -2.1909 7 8 3.5699 -1.8847 -3.1392 8 6 5.6749 -1.5367 -2.1308 9 1 6.0756 -2.0344 -1.2477 10 6 6.4227 -1.7307 -3.4514 11 6 6.4900 -0.3861 -2.7247 12 1 7.4272 -0.1265 -2.2322 13 6 5.7294 0.7682 -3.3249 14 7 6.1880 2.0269 -3.1772 15 8 4.7047 0.5644 -3.9408 16 7 2.0183 -0.6907 1.1961 17 6 1.6644 -2.0934 1.4278 18 6 2.7932 -0.0359 2.0832 19 8 3.0859 1.1254 1.8917 20 6 3.2960 -0.7466 3.3134 21 16 4.3009 0.3913 4.2991 22 6 4.7448 -0.6702 5.6336 23 1 4.3955 -1.6920 5.6500 24 6 5.5444 -0.1934 6.6631 25 7 5.9705 1.0518 6.6428 26 14 6.0144 -1.3186 8.0782 27 1 7.2821 -2.0204 7.7526 28 1 6.1978 -0.5124 9.3118 29 1 4.9373 -2.3175 8.2953 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6054 -1.7197 -1.2953 34 1 1.7516 -0.1582 -2.1370 35 1 3.9824 -0.4622 -0.4320 36 1 7.3156 -2.3558 -3.4371 37 1 5.8282 -1.7809 -4.3637 38 1 7.0077 2.1899 -2.6850 39 1 5.6986 2.7698 -3.5639 40 1 2.4157 -2.7378 0.9714 41 1 1.6238 -2.2855 2.5000 42 1 0.6904 -2.3003 0.9844 43 1 2.4484 -1.0895 3.9068 44 1 3.9017 -1.6026 3.0162 45 1 6.5290 1.3850 7.3625 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734809710.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:47 Heat of formation + Delta-G solvation = -113.412454 kcal Electronic energy + Delta-G solvation = -28173.509999 eV Core-core repulsion = 24123.979100 eV Total energy + Delta-G solvation = -4049.530899 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.65742 -41.05002 -39.87503 -37.79253 -36.80626 -35.27968 -34.64540 -34.55777 -33.12470 -30.19976 -28.05778 -27.83312 -27.62529 -25.87397 -24.46965 -22.80510 -21.58096 -20.91554 -20.30965 -19.57637 -18.97187 -18.32235 -18.14689 -17.39923 -17.17513 -16.85962 -16.80169 -16.51950 -16.38323 -15.95804 -15.58537 -15.29327 -15.17857 -14.61970 -14.52261 -14.47129 -14.25203 -13.92990 -13.75994 -13.51000 -13.19141 -13.10977 -13.08592 -12.98260 -12.88676 -12.86136 -12.57518 -11.98756 -11.71449 -11.69093 -11.65960 -11.17503 -11.11794 -10.88810 -10.87068 -10.67791 -10.23328 -10.11566 -9.75698 -8.62991 -8.32473 -6.09388 1.18198 1.27335 1.43701 1.47365 1.56124 1.57451 1.76703 1.99441 2.15923 2.29630 2.51842 2.86518 3.02083 3.28146 3.55274 3.57794 3.71599 3.76388 3.84527 4.00609 4.04437 4.17866 4.20608 4.26603 4.29812 4.50744 4.54831 4.60422 4.66986 4.70602 4.76744 4.81594 4.89546 4.99703 5.07040 5.21986 5.38829 5.44720 5.55965 5.83496 6.21818 6.24742 6.41334 6.44685 7.09652 7.12598 7.22395 7.30015 8.76346 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011102 B = 0.002988 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.559097 B = 9369.814074 C =10543.517635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.130 3.870 3 H 0.082 0.918 4 C 0.121 3.879 5 N -0.719 5.719 6 C 0.543 3.457 7 O -0.567 6.567 8 C -0.173 4.173 9 H 0.165 0.835 10 C -0.105 4.105 11 C -0.170 4.170 12 H 0.171 0.829 13 C 0.526 3.474 14 N -0.833 5.833 15 O -0.580 6.580 16 N -0.602 5.602 17 C 0.069 3.931 18 C 0.534 3.466 19 O -0.560 6.560 20 C -0.125 4.125 21 S -0.143 6.143 22 C -0.546 4.546 23 H 0.081 0.919 24 C 0.017 3.983 25 N -0.910 5.910 26 Si 0.993 3.007 27 H -0.267 1.267 28 H -0.280 1.280 29 H -0.260 1.260 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.401 0.599 36 H 0.152 0.848 37 H 0.085 0.915 38 H 0.419 0.581 39 H 0.406 0.594 40 H 0.063 0.937 41 H 0.080 0.920 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.108 0.892 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.853 -6.473 -16.804 18.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.026 3.974 3 H 0.100 0.900 4 C -0.003 4.003 5 N -0.370 5.370 6 C 0.330 3.670 7 O -0.445 6.445 8 C -0.194 4.194 9 H 0.182 0.818 10 C -0.143 4.143 11 C -0.192 4.192 12 H 0.188 0.812 13 C 0.312 3.688 14 N -0.396 5.396 15 O -0.459 6.459 16 N -0.336 5.336 17 C -0.073 4.073 18 C 0.322 3.678 19 O -0.438 6.438 20 C -0.276 4.276 21 S 0.084 5.916 22 C -0.694 4.694 23 H 0.099 0.901 24 C -0.188 4.188 25 N -0.546 5.546 26 Si 0.816 3.184 27 H -0.192 1.192 28 H -0.205 1.205 29 H -0.184 1.184 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.236 0.764 36 H 0.170 0.830 37 H 0.104 0.896 38 H 0.250 0.750 39 H 0.237 0.763 40 H 0.082 0.918 41 H 0.099 0.901 42 H 0.116 0.884 43 H 0.123 0.877 44 H 0.126 0.874 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.419 -5.262 -18.046 18.952 hybrid contribution 0.320 -0.779 1.545 1.759 sum -2.099 -6.041 -16.501 17.697 Atomic orbital electron populations 1.22026 0.91463 1.04084 1.03375 1.21300 0.96490 0.96960 0.82665 0.89951 1.21654 0.80091 1.01405 0.97167 1.45836 1.07942 1.59507 1.23675 1.19896 0.89332 0.76655 0.81098 1.90643 1.70748 1.49197 1.33956 1.22399 0.90036 1.04075 1.02871 0.81807 1.23078 1.02173 0.95029 0.93973 1.22532 1.02202 0.88734 1.05686 0.81200 1.20162 0.84325 0.85358 0.78987 1.43659 1.30484 1.07237 1.58235 1.90823 1.26303 1.85434 1.43388 1.47873 1.50291 1.13657 1.21800 1.22050 1.02518 0.79353 1.03349 1.20132 0.77636 0.86193 0.83828 1.90693 1.58378 1.18172 1.76559 1.23387 1.03697 1.03203 0.97304 1.85517 1.63173 1.19196 1.23676 1.23194 1.37330 0.99972 1.08874 0.90077 1.26039 0.94865 0.97040 1.00829 1.70168 1.34071 1.16464 1.33931 0.85025 0.79015 0.77839 0.76562 1.19216 1.20534 1.18380 0.89920 0.92148 0.89832 0.90268 0.91637 0.76409 0.83039 0.89647 0.74982 0.76270 0.91813 0.90131 0.88412 0.87709 0.87372 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.17 71.98 0.66 -1.88 16 2 C 0.13 2.94 2.80 44.99 0.13 3.06 16 3 H 0.08 2.35 6.90 -2.39 -0.02 2.33 16 4 C 0.12 2.83 4.97 86.38 0.43 3.26 16 5 N -0.72 -18.33 5.39 -463.06 -2.49 -20.82 16 6 C 0.54 15.08 5.52 87.66 0.48 15.56 16 7 O -0.57 -20.07 16.06 6.89 0.11 -19.96 16 8 C -0.17 -3.38 6.18 -11.54 -0.07 -3.45 16 9 H 0.16 2.32 8.14 -2.39 -0.02 2.30 16 10 C -0.10 -1.77 9.58 30.59 0.29 -1.48 16 11 C -0.17 -2.80 6.19 -11.54 -0.07 -2.87 16 12 H 0.17 1.43 8.14 -2.38 -0.02 1.41 16 13 C 0.53 11.89 7.55 87.66 0.66 12.55 16 14 N -0.83 -12.34 8.87 -173.53 -1.54 -13.88 16 15 O -0.58 -19.08 15.39 6.89 0.11 -18.98 16 16 N -0.60 -14.59 2.24 -822.59 -1.85 -16.44 16 17 C 0.07 1.19 9.40 127.77 1.20 2.39 16 18 C 0.53 18.24 7.40 87.66 0.65 18.89 16 19 O -0.56 -23.85 15.19 -3.04 -0.05 -23.89 16 20 C -0.12 -4.61 4.71 71.24 0.34 -4.28 16 21 S -0.14 -7.49 20.57 -56.49 -1.16 -8.65 16 22 C -0.55 -29.81 9.50 67.96 0.65 -29.17 16 23 H 0.08 4.12 7.80 -2.91 -0.02 4.10 16 24 C 0.02 0.95 5.49 84.86 0.47 1.41 16 25 N -0.91 -53.90 13.22 21.65 0.29 -53.61 16 26 Si 0.99 41.96 29.55 68.60 2.03 43.99 16 27 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 28 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 29 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 30 H 0.08 1.06 6.66 -2.39 -0.02 1.04 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.08 1.69 7.84 -2.38 -0.02 1.67 16 34 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.40 10.50 7.87 -92.71 -0.73 9.77 16 36 H 0.15 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.08 2.03 7.70 -2.39 -0.02 2.01 16 38 H 0.42 3.45 8.83 -92.71 -0.82 2.63 16 39 H 0.41 5.72 8.93 -92.71 -0.83 4.89 16 40 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.08 1.36 6.44 -2.39 -0.02 1.35 16 42 H 0.10 1.20 6.43 -2.38 -0.02 1.18 16 43 H 0.10 3.56 7.40 -2.40 -0.02 3.54 16 44 H 0.11 3.58 8.11 -2.40 -0.02 3.56 16 45 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -86.53 392.49 -0.07 -86.60 By element: Atomic # 1 Polarization: 32.96 SS G_CDS: -1.32 Total: 31.64 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: 5.81 Total: 13.99 kcal Atomic # 7 Polarization: -99.15 SS G_CDS: -5.59 Total: -104.75 kcal Atomic # 8 Polarization: -63.00 SS G_CDS: 0.17 Total: -62.83 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Atomic # 16 Polarization: -7.49 SS G_CDS: -1.16 Total: -8.65 kcal Total: -86.53 -0.07 -86.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734809710.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.815 kcal (2) G-P(sol) polarization free energy of solvation -86.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds