Wall clock time and date at job start Wed Apr 1 2020 01:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47319 * 2 1 4 4 C 1.52998 * 109.47187 * 239.99825 * 2 1 3 5 5 N 1.46497 * 109.47249 * 185.00045 * 4 2 1 6 6 C 1.46498 * 120.00085 * 270.00073 * 5 4 2 7 7 C 1.34774 * 120.00052 * 90.00145 * 5 4 2 8 8 O 1.21284 * 119.99814 * 0.02562 * 7 5 4 9 9 C 1.50701 * 120.00002 * 180.02562 * 7 5 4 10 10 H 1.08994 * 110.21573 * 40.70194 * 9 7 5 11 11 C 1.54480 * 110.24706 * 278.76973 * 9 7 5 12 12 C 1.54860 * 101.66130 * 266.39491 * 11 9 7 13 13 C 1.51283 * 104.20731 * 335.18881 * 12 11 9 14 14 O 1.21278 * 124.94350 * 196.29146 * 13 12 11 15 15 N 1.34419 * 110.11700 * 16.26734 * 13 12 11 16 16 N 1.46499 * 109.47151 * 120.00178 * 2 1 3 17 17 C 1.34780 * 119.99654 * 275.00458 * 16 2 1 18 18 O 1.21283 * 120.00321 * 359.97438 * 17 16 2 19 19 C 1.50707 * 119.99714 * 180.02562 * 17 16 2 20 20 S 1.81001 * 109.46858 * 179.97438 * 19 17 16 21 21 C 1.76199 * 99.99848 * 179.97438 * 20 19 17 22 22 H 1.08004 * 120.00177 * 359.97438 * 21 20 19 23 23 C 1.38798 * 120.00102 * 179.97438 * 21 20 19 24 24 N 1.31634 * 120.00298 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 119.99999 * 359.72259 * 23 21 20 26 26 H 1.48501 * 109.47085 * 270.27637 * 25 23 21 27 27 H 1.48505 * 109.46880 * 30.27468 * 25 23 21 28 28 H 1.48490 * 109.47245 * 150.27795 * 25 23 21 29 29 H 1.09001 * 109.46779 * 59.99811 * 1 2 3 30 30 H 1.08997 * 109.47319 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47096 * 299.99816 * 1 2 3 32 32 H 1.09000 * 109.47098 * 305.00549 * 4 2 1 33 33 H 1.08997 * 109.47072 * 64.99929 * 4 2 1 34 34 H 1.09006 * 109.46967 * 90.00056 * 6 5 4 35 35 H 1.09001 * 109.47396 * 210.00005 * 6 5 4 36 36 H 1.09000 * 109.47367 * 330.00082 * 6 5 4 37 37 H 1.09000 * 110.96516 * 24.53394 * 11 9 7 38 38 H 1.08999 * 110.97150 * 148.29998 * 11 9 7 39 39 H 1.09005 * 110.46495 * 216.51504 * 12 11 9 40 40 H 1.08993 * 110.49207 * 93.87683 * 12 11 9 41 41 H 0.97004 * 124.34895 * 180.38607 * 15 13 12 42 42 H 0.96995 * 120.00204 * 94.99231 * 16 2 1 43 43 H 1.08998 * 109.47313 * 59.99420 * 19 17 16 44 44 H 1.08997 * 109.47092 * 299.99044 * 19 17 16 45 45 H 0.96999 * 120.00168 * 179.72505 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.3343 0.2340 -1.7612 7 6 4.0757 -1.8987 -0.6115 8 8 3.3850 -2.7768 -0.1395 9 6 5.5777 -2.0066 -0.5507 10 1 6.0157 -1.0368 -0.3149 11 6 6.1309 -2.5306 -1.8945 12 6 6.2091 -4.0541 -1.6280 13 6 6.3294 -4.1622 -0.1238 14 8 6.6930 -5.1525 0.4745 15 7 5.9752 -3.0009 0.4530 16 7 2.0184 -0.6906 1.1961 17 6 2.1470 -0.0183 2.3571 18 8 1.8589 1.1586 2.4115 19 6 2.6499 -0.7286 3.5875 20 16 2.7112 0.4346 4.9729 21 6 3.3142 -0.6306 6.2403 22 1 3.5229 -1.6673 6.0205 23 6 3.5210 -0.1376 7.5211 24 7 3.9720 -0.9333 8.4679 25 14 3.1675 1.6572 7.8995 26 1 4.3890 2.4650 7.6532 27 1 2.0695 2.1406 7.0241 28 1 2.7629 1.7929 9.3217 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6053 -1.7198 -1.2951 33 1 1.7517 -0.1584 -2.1369 34 1 4.5400 0.9848 -0.9982 35 1 5.2735 -0.1926 -2.1137 36 1 3.8103 0.6988 -2.5964 37 1 5.4435 -2.3110 -2.7114 38 1 7.1194 -2.1182 -2.0968 39 1 7.0872 -4.4811 -2.1126 40 1 5.3022 -4.5492 -1.9747 41 1 5.9812 -2.8408 1.4097 42 1 2.2490 -1.6318 1.1526 43 1 3.6492 -1.1204 3.3979 44 1 1.9777 -1.5508 3.8326 45 1 4.1204 -0.5877 9.3620 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001735217911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:53 Heat of formation + Delta-G solvation = -102.432530 kcal Electronic energy + Delta-G solvation = -28595.308675 eV Core-core repulsion = 24546.253901 eV Total energy + Delta-G solvation = -4049.054774 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.41588 -39.87792 -38.96772 -36.78976 -36.24427 -34.84203 -32.42324 -31.77060 -31.57811 -29.20701 -28.59858 -27.69963 -26.08829 -25.59563 -23.19360 -21.89286 -20.88875 -20.30429 -19.90053 -18.12702 -17.77618 -17.62978 -16.81601 -16.51852 -16.44993 -15.59146 -15.45301 -15.04119 -14.97827 -14.86157 -14.18691 -14.07104 -13.93525 -13.85341 -13.55745 -13.38560 -13.34215 -13.21907 -12.86472 -12.79491 -12.78009 -12.32255 -12.13933 -11.99183 -11.89686 -11.79419 -11.31658 -11.25518 -11.00486 -10.58989 -10.58268 -10.13088 -9.85047 -9.50539 -9.37118 -9.19990 -8.99719 -8.88200 -8.49153 -6.90710 -6.26951 -3.98981 2.01394 2.23722 2.52792 2.79237 2.99671 3.06983 3.31909 3.36357 3.50300 3.69293 3.81657 3.89793 3.96051 4.31251 4.33861 4.49078 4.55199 4.63946 4.71348 4.80559 4.88044 4.95098 5.02071 5.09387 5.11578 5.12025 5.24499 5.27522 5.34107 5.36191 5.38016 5.56388 5.78129 5.84055 5.90561 6.05588 6.13270 6.41532 6.63904 6.74005 6.82763 7.60534 7.76604 7.96151 7.99486 8.44778 8.54403 9.18853 10.82379 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010456 B = 0.003471 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.248672 B = 8065.733882 C = 9999.511205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.127 3.873 3 H 0.088 0.912 4 C 0.106 3.894 5 N -0.610 5.610 6 C 0.070 3.930 7 C 0.505 3.495 8 O -0.523 6.523 9 C 0.113 3.887 10 H 0.115 0.885 11 C -0.120 4.120 12 C -0.156 4.156 13 C 0.527 3.473 14 O -0.526 6.526 15 N -0.709 5.709 16 N -0.730 5.730 17 C 0.531 3.469 18 O -0.524 6.524 19 C -0.122 4.122 20 S -0.141 6.141 21 C -0.522 4.522 22 H 0.088 0.912 23 C 0.096 3.904 24 N -0.880 5.880 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.236 1.236 28 H -0.274 1.274 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.419 0.581 42 H 0.407 0.593 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.693 1.094 -30.017 30.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.021 3.979 3 H 0.106 0.894 4 C -0.017 4.017 5 N -0.343 5.343 6 C -0.073 4.073 7 C 0.291 3.709 8 O -0.398 6.398 9 C 0.003 3.997 10 H 0.133 0.867 11 C -0.158 4.158 12 C -0.197 4.197 13 C 0.313 3.687 14 O -0.402 6.402 15 N -0.364 5.364 16 N -0.388 5.388 17 C 0.317 3.683 18 O -0.399 6.399 19 C -0.273 4.273 20 S 0.085 5.915 21 C -0.669 4.669 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.517 5.517 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.160 1.160 28 H -0.199 1.199 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.259 0.741 42 H 0.245 0.755 43 H 0.110 0.890 44 H 0.114 0.886 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.119 1.968 -29.293 29.381 hybrid contribution 0.254 -0.829 0.805 1.183 sum 1.373 1.138 -28.489 28.544 Atomic orbital electron populations 1.22137 0.94706 1.02422 1.02901 1.21298 0.94434 0.97764 0.84421 0.89372 1.21943 0.79220 1.02818 0.97745 1.47797 1.06890 1.21207 1.58432 1.21989 0.95439 0.90701 0.99213 1.21069 0.90849 0.81369 0.77625 1.90686 1.64265 1.39335 1.45535 1.21589 0.91712 0.95205 0.91243 0.86722 1.22657 1.03113 0.95256 0.94813 1.22400 1.05772 0.97054 0.94440 1.20763 0.75363 0.82145 0.90427 1.90790 1.47103 1.32017 1.70245 1.45947 1.67191 1.13551 1.09744 1.46298 1.68658 1.14886 1.08990 1.20274 0.76941 0.87166 0.83966 1.90674 1.48902 1.15754 1.84577 1.23261 1.04233 1.03438 0.96370 1.84697 1.87262 1.16733 1.02776 1.22333 1.50317 0.98858 0.95420 0.89410 1.24713 0.93400 0.98241 0.94907 1.69946 1.43314 1.35767 1.02626 0.86736 0.81044 0.84922 0.79138 1.19244 1.15961 1.19945 0.91745 0.92268 0.91302 0.89080 0.88738 0.91770 0.90636 0.90329 0.88721 0.88309 0.87502 0.87502 0.74083 0.75485 0.89016 0.88623 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.48 37.16 0.35 -1.24 16 2 C 0.13 1.32 2.88 -67.93 -0.20 1.12 16 3 H 0.09 1.02 7.58 -51.93 -0.39 0.62 16 4 C 0.11 0.74 5.19 -4.04 -0.02 0.72 16 5 N -0.61 -4.04 2.77 -181.57 -0.50 -4.55 16 6 C 0.07 0.24 9.98 59.85 0.60 0.83 16 7 C 0.50 4.47 6.14 -10.99 -0.07 4.41 16 8 O -0.52 -6.57 13.89 5.55 0.08 -6.49 16 9 C 0.11 0.77 2.97 -68.16 -0.20 0.57 16 10 H 0.12 0.56 7.29 -51.93 -0.38 0.18 16 11 C -0.12 -0.48 5.72 -24.97 -0.14 -0.62 16 12 C -0.16 -1.07 6.86 -26.62 -0.18 -1.25 16 13 C 0.53 6.19 8.43 -10.86 -0.09 6.10 16 14 O -0.53 -8.73 18.03 5.56 0.10 -8.63 16 15 N -0.71 -7.19 5.46 -53.88 -0.29 -7.49 16 16 N -0.73 -10.02 4.48 -53.80 -0.24 -10.27 16 17 C 0.53 9.66 7.81 -10.98 -0.09 9.58 16 18 O -0.52 -11.09 15.52 5.56 0.09 -11.01 16 19 C -0.12 -2.50 6.16 36.01 0.22 -2.28 16 20 S -0.14 -3.63 18.55 -107.50 -1.99 -5.62 16 21 C -0.52 -15.35 10.04 30.94 0.31 -15.04 16 22 H 0.09 2.72 8.03 -52.48 -0.42 2.30 16 23 C 0.10 2.85 5.50 -17.43 -0.10 2.76 16 24 N -0.88 -27.01 13.97 55.49 0.78 -26.24 16 25 Si 0.86 21.99 27.74 -169.99 -4.71 17.27 16 26 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 28 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.09 0.72 7.42 -51.93 -0.39 0.34 16 33 H 0.09 0.37 7.89 -51.93 -0.41 -0.04 16 34 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.10 5.61 -51.93 -0.29 -0.19 16 36 H 0.08 0.13 7.89 -51.93 -0.41 -0.28 16 37 H 0.09 0.23 7.60 -51.93 -0.39 -0.17 16 38 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.42 4.59 8.96 -40.82 -0.37 4.22 16 42 H 0.41 5.61 5.83 -40.82 -0.24 5.37 16 43 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 44 H 0.10 1.91 8.14 -51.92 -0.42 1.49 16 45 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 384.21 15.07 5.79 5.79 Total: -1.00 -39.50 384.21 -7.17 -46.67 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -6.65 Total: 4.91 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 0.40 Total: 5.65 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: -0.26 Total: -48.53 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: 0.26 Total: -26.13 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.71 Total: 17.27 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -39.50 -7.17 -46.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735217911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.767 kcal (2) G-P(sol) polarization free energy of solvation -39.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds