Wall clock time and date at job start Wed Apr 1 2020 01:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47319 * 2 1 4 4 C 1.52998 * 109.47187 * 239.99825 * 2 1 3 5 5 N 1.46497 * 109.47249 * 185.00045 * 4 2 1 6 6 C 1.46498 * 120.00085 * 270.00073 * 5 4 2 7 7 C 1.34774 * 120.00052 * 90.00145 * 5 4 2 8 8 O 1.21284 * 119.99814 * 0.02562 * 7 5 4 9 9 C 1.50701 * 120.00002 * 180.02562 * 7 5 4 10 10 H 1.08994 * 110.21573 * 40.70194 * 9 7 5 11 11 C 1.54480 * 110.24706 * 278.76973 * 9 7 5 12 12 C 1.54860 * 101.66130 * 266.39491 * 11 9 7 13 13 C 1.51283 * 104.20731 * 335.18881 * 12 11 9 14 14 O 1.21278 * 124.94350 * 196.29146 * 13 12 11 15 15 N 1.34419 * 110.11700 * 16.26734 * 13 12 11 16 16 N 1.46499 * 109.47151 * 120.00178 * 2 1 3 17 17 C 1.34780 * 119.99654 * 275.00458 * 16 2 1 18 18 O 1.21283 * 120.00321 * 359.97438 * 17 16 2 19 19 C 1.50707 * 119.99714 * 180.02562 * 17 16 2 20 20 S 1.81001 * 109.46858 * 179.97438 * 19 17 16 21 21 C 1.76199 * 99.99848 * 179.97438 * 20 19 17 22 22 H 1.08004 * 120.00177 * 359.97438 * 21 20 19 23 23 C 1.38798 * 120.00102 * 179.97438 * 21 20 19 24 24 N 1.31634 * 120.00298 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 119.99999 * 359.72259 * 23 21 20 26 26 H 1.48501 * 109.47085 * 270.27637 * 25 23 21 27 27 H 1.48505 * 109.46880 * 30.27468 * 25 23 21 28 28 H 1.48490 * 109.47245 * 150.27795 * 25 23 21 29 29 H 1.09001 * 109.46779 * 59.99811 * 1 2 3 30 30 H 1.08997 * 109.47319 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47096 * 299.99816 * 1 2 3 32 32 H 1.09000 * 109.47098 * 305.00549 * 4 2 1 33 33 H 1.08997 * 109.47072 * 64.99929 * 4 2 1 34 34 H 1.09006 * 109.46967 * 90.00056 * 6 5 4 35 35 H 1.09001 * 109.47396 * 210.00005 * 6 5 4 36 36 H 1.09000 * 109.47367 * 330.00082 * 6 5 4 37 37 H 1.09000 * 110.96516 * 24.53394 * 11 9 7 38 38 H 1.08999 * 110.97150 * 148.29998 * 11 9 7 39 39 H 1.09005 * 110.46495 * 216.51504 * 12 11 9 40 40 H 1.08993 * 110.49207 * 93.87683 * 12 11 9 41 41 H 0.97004 * 124.34895 * 180.38607 * 15 13 12 42 42 H 0.96995 * 120.00204 * 94.99231 * 16 2 1 43 43 H 1.08998 * 109.47313 * 59.99420 * 19 17 16 44 44 H 1.08997 * 109.47092 * 299.99044 * 19 17 16 45 45 H 0.96999 * 120.00168 * 179.72505 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.3343 0.2340 -1.7612 7 6 4.0757 -1.8987 -0.6115 8 8 3.3850 -2.7768 -0.1395 9 6 5.5777 -2.0066 -0.5507 10 1 6.0157 -1.0368 -0.3149 11 6 6.1309 -2.5306 -1.8945 12 6 6.2091 -4.0541 -1.6280 13 6 6.3294 -4.1622 -0.1238 14 8 6.6930 -5.1525 0.4745 15 7 5.9752 -3.0009 0.4530 16 7 2.0184 -0.6906 1.1961 17 6 2.1470 -0.0183 2.3571 18 8 1.8589 1.1586 2.4115 19 6 2.6499 -0.7286 3.5875 20 16 2.7112 0.4346 4.9729 21 6 3.3142 -0.6306 6.2403 22 1 3.5229 -1.6673 6.0205 23 6 3.5210 -0.1376 7.5211 24 7 3.9720 -0.9333 8.4679 25 14 3.1675 1.6572 7.8995 26 1 4.3890 2.4650 7.6532 27 1 2.0695 2.1406 7.0241 28 1 2.7629 1.7929 9.3217 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6053 -1.7198 -1.2951 33 1 1.7517 -0.1584 -2.1369 34 1 4.5400 0.9848 -0.9982 35 1 5.2735 -0.1926 -2.1137 36 1 3.8103 0.6988 -2.5964 37 1 5.4435 -2.3110 -2.7114 38 1 7.1194 -2.1182 -2.0968 39 1 7.0872 -4.4811 -2.1126 40 1 5.3022 -4.5492 -1.9747 41 1 5.9812 -2.8408 1.4097 42 1 2.2490 -1.6318 1.1526 43 1 3.6492 -1.1204 3.3979 44 1 1.9777 -1.5508 3.8326 45 1 4.1204 -0.5877 9.3620 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001735217911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:53 Heat of formation + Delta-G solvation = -134.481430 kcal Electronic energy + Delta-G solvation = -28596.698419 eV Core-core repulsion = 24546.253901 eV Total energy + Delta-G solvation = -4050.444519 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.09997 -40.94357 -40.05585 -37.68293 -37.03297 -35.76338 -34.71890 -32.87302 -32.26541 -30.30026 -29.64993 -28.12246 -27.90282 -26.67140 -23.78657 -22.83153 -21.68175 -21.49160 -20.53189 -19.93372 -18.70708 -18.39023 -17.88518 -17.62266 -17.38832 -17.12647 -16.53496 -16.31259 -16.16775 -15.86939 -15.74668 -15.01534 -14.85902 -14.74565 -14.72440 -14.53085 -14.20740 -14.01744 -13.90741 -13.63561 -13.40941 -13.37080 -13.18292 -13.04193 -13.02612 -12.69478 -12.60833 -12.45075 -12.25013 -12.13080 -11.89725 -11.37655 -11.20904 -11.04501 -11.01527 -10.62084 -10.23965 -10.10060 -9.68545 -9.05160 -8.55220 -6.27680 0.93420 1.28633 1.33495 1.43153 1.47428 1.52423 1.52835 1.90208 2.20254 2.24639 2.39487 2.66590 2.82586 3.26367 3.43022 3.46069 3.73360 3.87139 3.88719 4.04819 4.12881 4.19873 4.24657 4.34411 4.40025 4.42053 4.52545 4.70765 4.71467 4.76321 4.80684 4.88677 4.99197 5.02966 5.06335 5.23372 5.40618 5.56967 5.65584 5.66042 5.90762 6.06637 6.27738 6.40907 6.88659 7.01346 7.12229 7.16850 8.57793 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010456 B = 0.003471 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.248672 B = 8065.733882 C = 9999.511205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.121 3.879 3 H 0.082 0.918 4 C 0.111 3.889 5 N -0.604 5.604 6 C 0.060 3.940 7 C 0.498 3.502 8 O -0.569 6.569 9 C 0.107 3.893 10 H 0.140 0.860 11 C -0.104 4.104 12 C -0.150 4.150 13 C 0.511 3.489 14 O -0.591 6.591 15 N -0.713 5.713 16 N -0.711 5.711 17 C 0.537 3.463 18 O -0.555 6.555 19 C -0.114 4.114 20 S -0.156 6.156 21 C -0.537 4.537 22 H 0.054 0.946 23 C 0.046 3.954 24 N -0.918 5.918 25 Si 0.919 3.081 26 H -0.258 1.258 27 H -0.235 1.235 28 H -0.258 1.258 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.034 0.966 32 H 0.083 0.917 33 H 0.138 0.862 34 H 0.053 0.947 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.121 0.879 38 H 0.130 0.870 39 H 0.125 0.875 40 H 0.106 0.894 41 H 0.409 0.591 42 H 0.408 0.592 43 H 0.100 0.900 44 H 0.097 0.903 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.637 3.363 -33.722 33.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.016 3.984 3 H 0.100 0.900 4 C -0.012 4.012 5 N -0.336 5.336 6 C -0.081 4.081 7 C 0.285 3.715 8 O -0.448 6.448 9 C -0.002 4.002 10 H 0.157 0.843 11 C -0.142 4.142 12 C -0.190 4.190 13 C 0.300 3.700 14 O -0.472 6.472 15 N -0.366 5.366 16 N -0.367 5.367 17 C 0.322 3.678 18 O -0.433 6.433 19 C -0.265 4.265 20 S 0.071 5.929 21 C -0.684 4.684 22 H 0.072 0.928 23 C -0.160 4.160 24 N -0.556 5.556 25 Si 0.740 3.260 26 H -0.182 1.182 27 H -0.159 1.159 28 H -0.182 1.182 29 H 0.117 0.883 30 H 0.080 0.920 31 H 0.054 0.946 32 H 0.101 0.899 33 H 0.156 0.844 34 H 0.072 0.928 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.140 0.860 38 H 0.148 0.852 39 H 0.143 0.857 40 H 0.124 0.876 41 H 0.246 0.754 42 H 0.248 0.752 43 H 0.118 0.882 44 H 0.115 0.885 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.056 4.278 -33.078 33.370 hybrid contribution 0.240 -1.599 1.855 2.461 sum 1.296 2.678 -31.223 31.364 Atomic orbital electron populations 1.22097 0.94052 1.02607 1.02959 1.21655 0.95029 0.97550 0.84150 0.90032 1.21977 0.79439 1.02579 0.97185 1.47904 1.07114 1.21119 1.57428 1.22294 0.96530 0.89709 0.99570 1.21475 0.91552 0.81355 0.77118 1.90673 1.65292 1.41183 1.47669 1.21964 0.90714 0.95527 0.92035 0.84272 1.22805 1.05346 0.92425 0.93587 1.22435 1.06521 0.99736 0.90322 1.21737 0.74116 0.81461 0.92729 1.90737 1.50098 1.34293 1.72033 1.46178 1.66173 1.14178 1.10028 1.46257 1.66918 1.14819 1.08735 1.19793 0.77043 0.86608 0.84401 1.90661 1.50782 1.16840 1.85063 1.23263 1.05161 1.02379 0.95733 1.84468 1.86974 1.17779 1.03723 1.22481 1.50631 0.98145 0.97173 0.92796 1.25631 0.92993 1.02712 0.94636 1.70033 1.44238 1.37958 1.03360 0.85811 0.81162 0.79384 0.79649 1.18222 1.15930 1.18175 0.88254 0.92013 0.94650 0.89852 0.84412 0.92841 0.88029 0.87723 0.86049 0.85183 0.85697 0.87552 0.75351 0.75244 0.88166 0.88459 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.48 71.98 0.68 -2.10 16 2 C 0.12 2.25 2.88 44.99 0.13 2.38 16 3 H 0.08 1.69 7.58 -2.39 -0.02 1.67 16 4 C 0.11 1.16 5.19 86.38 0.45 1.61 16 5 N -0.60 -5.92 2.77 -846.76 -2.35 -8.27 16 6 C 0.06 0.13 9.98 127.77 1.27 1.41 16 7 C 0.50 7.77 6.14 87.66 0.54 8.31 16 8 O -0.57 -13.96 13.89 -3.04 -0.04 -14.00 16 9 C 0.11 1.20 2.97 44.70 0.13 1.33 16 10 H 0.14 0.89 7.29 -2.39 -0.02 0.88 16 11 C -0.10 -0.40 5.72 31.73 0.18 -0.22 16 12 C -0.15 -1.77 6.86 30.67 0.21 -1.56 16 13 C 0.51 12.28 8.43 87.90 0.74 13.02 16 14 O -0.59 -20.95 18.03 -3.02 -0.05 -21.00 16 15 N -0.71 -14.53 5.46 -442.97 -2.42 -16.95 16 16 N -0.71 -18.95 4.48 -442.52 -1.98 -20.93 16 17 C 0.54 19.46 7.81 87.66 0.68 20.15 16 18 O -0.56 -23.38 15.52 -3.04 -0.05 -23.43 16 19 C -0.11 -4.76 6.16 71.24 0.44 -4.32 16 20 S -0.16 -8.11 18.55 -56.49 -1.05 -9.16 16 21 C -0.54 -32.56 10.04 67.95 0.68 -31.87 16 22 H 0.05 3.52 8.03 -2.91 -0.02 3.49 16 23 C 0.05 2.75 5.50 84.86 0.47 3.22 16 24 N -0.92 -57.51 13.97 21.65 0.30 -57.21 16 25 Si 0.92 45.55 27.74 68.60 1.90 47.45 16 26 H -0.26 -12.30 7.11 99.48 0.71 -11.60 16 27 H -0.24 -11.60 6.74 99.48 0.67 -10.93 16 28 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 29 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.08 1.09 7.42 -2.39 -0.02 1.07 16 33 H 0.14 0.33 7.89 -2.39 -0.02 0.31 16 34 H 0.05 0.29 8.14 -2.38 -0.02 0.27 16 35 H 0.10 -0.30 5.61 -2.39 -0.01 -0.31 16 36 H 0.10 -0.25 7.89 -2.39 -0.02 -0.27 16 37 H 0.12 -0.09 7.60 -2.39 -0.02 -0.11 16 38 H 0.13 -0.21 8.14 -2.39 -0.02 -0.23 16 39 H 0.12 1.02 8.14 -2.38 -0.02 1.00 16 40 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.41 9.52 8.96 -92.71 -0.83 8.69 16 42 H 0.41 11.10 5.83 -92.71 -0.54 10.56 16 43 H 0.10 3.97 8.14 -2.40 -0.02 3.95 16 44 H 0.10 4.00 8.14 -2.40 -0.02 3.98 16 45 H 0.28 16.01 8.31 -92.71 -0.77 15.24 16 Total: -1.00 -92.03 384.21 0.50 -91.53 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -0.38 Total: 20.62 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 6.61 Total: 11.34 kcal Atomic # 7 Polarization: -96.91 SS G_CDS: -6.45 Total: -103.35 kcal Atomic # 8 Polarization: -58.29 SS G_CDS: -0.14 Total: -58.43 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.90 Total: 47.45 kcal Atomic # 16 Polarization: -8.11 SS G_CDS: -1.05 Total: -9.16 kcal Total: -92.03 0.50 -91.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735217911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.948 kcal (2) G-P(sol) polarization free energy of solvation -92.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds