Wall clock time and date at job start Wed Apr 1 2020 01:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47541 * 2 1 4 4 N 1.46501 * 109.47186 * 239.99872 * 2 1 3 5 5 C 1.34780 * 119.99985 * 85.00117 * 4 2 1 6 6 O 1.21285 * 119.99917 * 0.02562 * 5 4 2 7 7 C 1.50697 * 120.00267 * 180.02562 * 5 4 2 8 8 S 1.81000 * 109.47233 * 179.97438 * 7 5 4 9 9 C 1.76194 * 99.99910 * 179.97438 * 8 7 5 10 10 H 1.08006 * 120.00542 * 359.97438 * 9 8 7 11 11 C 1.38800 * 119.99937 * 179.97438 * 9 8 7 12 12 N 1.31620 * 120.00004 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99845 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47359 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47237 * 120.00087 * 13 11 9 16 16 H 1.48507 * 109.47097 * 239.99709 * 13 11 9 17 17 C 1.53003 * 109.47486 * 119.99884 * 2 1 3 18 18 C 1.53035 * 109.46022 * 300.00267 * 17 2 1 19 19 C 1.53197 * 109.31578 * 181.38122 * 18 17 2 20 20 N 1.46923 * 108.77405 * 305.36457 * 19 18 17 21 21 C 1.34773 * 120.63332 * 233.58329 * 20 19 18 22 22 O 1.21356 * 119.99650 * 8.70371 * 21 20 19 23 23 C 1.49447 * 120.00354 * 188.70425 * 21 20 19 24 24 N 1.34781 * 120.00042 * 186.74410 * 23 21 20 25 25 O 1.21352 * 119.99904 * 6.74739 * 23 21 20 26 26 C 1.46930 * 118.73833 * 53.85708 * 20 19 18 27 27 C 1.53048 * 109.45623 * 60.06639 * 17 2 1 28 28 H 1.08999 * 109.47026 * 59.99929 * 1 2 3 29 29 H 1.08999 * 109.47062 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47070 * 299.99677 * 1 2 3 31 31 H 0.97003 * 120.00172 * 264.99774 * 4 2 1 32 32 H 1.09006 * 109.46824 * 299.99823 * 7 5 4 33 33 H 1.08999 * 109.47200 * 59.99137 * 7 5 4 34 34 H 0.97007 * 119.99890 * 180.02562 * 12 11 9 35 35 H 1.08996 * 109.45418 * 180.02562 * 17 2 1 36 36 H 1.09010 * 109.49858 * 61.43043 * 18 17 2 37 37 H 1.08995 * 109.52530 * 301.35158 * 18 17 2 38 38 H 1.08995 * 109.58468 * 185.57751 * 19 18 17 39 39 H 1.08995 * 109.70098 * 65.21800 * 19 18 17 40 40 H 0.97000 * 119.99374 * 180.02562 * 24 23 21 41 41 H 0.96997 * 119.99966 * 359.72497 * 24 23 21 42 42 H 1.08998 * 109.58856 * 65.92840 * 26 20 19 43 43 H 1.09005 * 109.58870 * 186.35032 * 26 20 19 44 44 H 1.08994 * 109.50003 * 298.56870 * 27 17 2 45 45 H 1.08999 * 109.49353 * 58.63369 * 27 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0183 -2.3572 6 8 1.8591 1.1586 -2.4115 7 6 2.6488 -0.7288 -3.5878 8 16 2.7092 0.4341 -4.9734 9 6 3.3125 -0.6310 -6.2407 10 1 3.5226 -1.6673 -6.0206 11 6 3.5177 -0.1384 -7.5220 12 7 3.2621 1.1246 -7.7902 13 14 4.1567 -1.2678 -8.8657 14 1 4.3640 -2.6295 -8.3107 15 1 3.1684 -1.3290 -9.9724 16 1 5.4462 -0.7427 -9.3821 17 6 2.0400 -0.7212 1.2492 18 6 1.5298 0.0004 2.4986 19 6 2.0706 -0.7039 3.7470 20 7 1.7086 -2.1264 3.6816 21 6 1.0560 -2.7165 4.7024 22 8 0.6226 -2.0442 5.6151 23 6 0.8660 -4.1989 4.7106 24 7 0.0987 -4.7747 5.6573 25 8 1.4026 -4.8840 3.8649 26 6 2.0770 -2.8948 2.4846 27 6 1.5311 -2.1646 1.2481 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.2490 -1.6318 -1.1526 32 1 3.6480 -1.1213 -3.3986 33 1 1.9760 -1.5506 -3.8325 34 1 3.4052 1.4688 -8.6858 35 1 3.1300 -0.7206 1.2491 36 1 0.4400 -0.0216 2.5119 37 1 1.8726 1.0349 2.4873 38 1 1.6317 -0.2558 4.6383 39 1 3.1554 -0.6043 3.7841 40 1 -0.0242 -5.7369 5.6628 41 1 -0.3269 -4.2275 6.3357 42 1 3.1623 -2.9701 2.4184 43 1 1.6423 -3.8927 2.5429 44 1 0.4415 -2.1662 1.2732 45 1 1.8750 -2.6708 0.3462 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001735475805.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:42:58 Heat of formation + Delta-G solvation = -101.804246 kcal Electronic energy + Delta-G solvation = -27490.087901 eV Core-core repulsion = 23441.060371 eV Total energy + Delta-G solvation = -4049.027530 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.42183 -39.87143 -38.95562 -38.11136 -35.79131 -34.22422 -32.82982 -32.42698 -31.50185 -30.43033 -28.45050 -26.74086 -25.49828 -24.83292 -23.81741 -22.49675 -20.89149 -20.17055 -19.57138 -18.35066 -17.86425 -17.66049 -16.85079 -16.43895 -16.34653 -16.08589 -15.65829 -15.14155 -14.87320 -14.80378 -14.69382 -14.55506 -14.19695 -13.96555 -13.81027 -13.53572 -13.16050 -12.98245 -12.60938 -12.52344 -12.37894 -12.13495 -11.89193 -11.68365 -11.33102 -11.10158 -11.06887 -11.01708 -10.93312 -10.76181 -10.64764 -10.44915 -9.80172 -9.66597 -9.36295 -9.22517 -9.07644 -8.87294 -8.22637 -6.49534 -6.21713 -3.91934 0.89140 1.94416 2.67140 3.03699 3.11439 3.16527 3.21594 3.28462 3.33218 3.71573 3.92949 4.20544 4.30358 4.40270 4.47136 4.66661 4.87162 4.90179 5.09518 5.11812 5.13594 5.20694 5.24618 5.36570 5.42616 5.49205 5.51579 5.55662 5.63483 5.67836 5.76049 5.87316 5.89735 5.94367 6.04679 6.14338 6.14816 6.28605 6.37461 6.69376 6.73058 7.23677 7.48245 7.60088 7.73322 8.35584 8.64042 9.23857 10.85743 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.022934 B = 0.001933 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.613912 B =14479.381729 C =15339.632165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.149 3.851 3 H 0.089 0.911 4 N -0.735 5.735 5 C 0.533 3.467 6 O -0.518 6.518 7 C -0.154 4.154 8 S -0.061 6.061 9 C -0.535 4.535 10 H 0.073 0.927 11 C 0.073 3.927 12 N -0.867 5.867 13 Si 0.919 3.081 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.280 1.280 17 C -0.097 4.097 18 C -0.127 4.127 19 C 0.108 3.892 20 N -0.576 5.576 21 C 0.506 3.494 22 O -0.525 6.525 23 C 0.515 3.485 24 N -0.820 5.820 25 O -0.511 6.511 26 C 0.069 3.931 27 C -0.134 4.134 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.396 0.604 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.268 0.732 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.412 0.588 41 H 0.414 0.586 42 H 0.073 0.927 43 H 0.140 0.860 44 H 0.074 0.926 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.252 -10.962 28.847 31.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.044 3.956 3 H 0.107 0.893 4 N -0.390 5.390 5 C 0.319 3.681 6 O -0.392 6.392 7 C -0.305 4.305 8 S 0.166 5.834 9 C -0.683 4.683 10 H 0.091 0.909 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.206 1.206 17 C -0.116 4.116 18 C -0.166 4.166 19 C -0.014 4.014 20 N -0.309 5.309 21 C 0.288 3.712 22 O -0.402 6.402 23 C 0.295 3.705 24 N -0.386 5.386 25 O -0.388 6.388 26 C -0.053 4.053 27 C -0.172 4.172 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.231 0.769 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.114 0.886 39 H 0.094 0.906 40 H 0.244 0.756 41 H 0.245 0.755 42 H 0.091 0.909 43 H 0.156 0.844 44 H 0.092 0.908 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.545 -8.753 28.485 30.311 hybrid contribution 0.665 -2.644 -0.567 2.784 sum -4.880 -11.397 27.917 30.547 Atomic orbital electron populations 1.22286 0.95597 1.02063 1.02571 1.20835 0.94040 0.97324 0.83364 0.89341 1.46151 1.69375 1.13887 1.09557 1.20302 0.76790 0.87228 0.83793 1.90697 1.48305 1.15767 1.84414 1.23538 1.03634 1.04846 0.98444 1.85391 1.86297 1.12935 0.98784 1.22911 1.50814 0.98208 0.96356 0.90889 1.24996 0.95129 0.95543 0.97979 1.70027 1.45628 1.13224 1.21403 0.86117 0.78513 0.80142 0.80720 1.19617 1.20576 1.20579 1.21458 1.01062 0.95011 0.94071 1.21981 1.01992 0.99686 0.92933 1.21806 1.00417 0.79278 0.99918 1.48000 1.54509 1.11172 1.17224 1.19972 0.79689 0.88337 0.83231 1.90768 1.48208 1.64857 1.36336 1.20202 0.79267 0.89267 0.81806 1.43570 1.50776 1.12605 1.31631 1.90582 1.47538 1.64535 1.36134 1.23005 1.01534 0.98343 0.82375 1.22164 1.01857 0.95267 0.97896 0.91758 0.92421 0.91827 0.76945 0.89291 0.89300 0.92249 0.90085 0.90570 0.89816 0.88554 0.90611 0.75552 0.75493 0.90903 0.84362 0.90756 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.78 8.78 37.15 0.33 -1.45 16 2 C 0.15 1.62 2.40 -67.93 -0.16 1.46 16 3 H 0.09 1.15 7.58 -51.93 -0.39 0.75 16 4 N -0.73 -9.32 5.00 -53.81 -0.27 -9.59 16 5 C 0.53 9.70 7.81 -10.99 -0.09 9.61 16 6 O -0.52 -11.52 15.52 5.55 0.09 -11.44 16 7 C -0.15 -3.07 6.16 36.00 0.22 -2.85 16 8 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 9 C -0.53 -15.22 9.50 30.94 0.29 -14.92 16 10 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 11 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 12 N -0.87 -26.17 13.22 55.49 0.73 -25.43 16 13 Si 0.92 21.42 29.55 -169.99 -5.02 16.39 16 14 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 C -0.10 -0.75 2.14 -90.58 -0.19 -0.94 16 18 C -0.13 -0.87 4.96 -26.61 -0.13 -1.00 16 19 C 0.11 0.74 6.44 -3.71 -0.02 0.72 16 20 N -0.58 -4.48 2.97 -173.01 -0.51 -5.00 16 21 C 0.51 4.35 7.73 -11.59 -0.09 4.26 16 22 O -0.52 -5.44 15.93 5.49 0.09 -5.35 16 23 C 0.51 3.82 8.01 -11.58 -0.09 3.72 16 24 N -0.82 -3.25 8.87 30.91 0.27 -2.98 16 25 O -0.51 -4.78 14.01 5.50 0.08 -4.71 16 26 C 0.07 0.50 6.01 -3.48 -0.02 0.48 16 27 C -0.13 -0.95 4.83 -26.38 -0.13 -1.08 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.56 6.46 -51.93 -0.34 0.22 16 30 H 0.06 0.57 6.46 -51.93 -0.34 0.24 16 31 H 0.40 3.96 6.84 -40.82 -0.28 3.68 16 32 H 0.09 1.64 8.14 -51.91 -0.42 1.21 16 33 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 34 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.56 6.51 -51.92 -0.34 0.22 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.10 0.72 7.01 -51.93 -0.36 0.35 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.41 0.84 8.93 -40.82 -0.36 0.47 16 41 H 0.41 1.15 8.32 -40.82 -0.34 0.81 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.14 1.14 4.30 -54.84 -0.24 0.90 16 44 H 0.07 0.57 6.51 -51.93 -0.34 0.23 16 45 H 0.08 0.52 6.46 -51.93 -0.34 0.18 16 LS Contribution 375.73 15.07 5.66 5.66 Total: -1.00 -36.56 375.73 -7.44 -44.00 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -6.16 Total: 2.30 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -0.18 Total: -0.01 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.23 Total: -43.00 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: 0.25 Total: -21.49 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.56 -7.44 -44.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735475805.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.805 kcal (2) G-P(sol) polarization free energy of solvation -36.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds