Wall clock time and date at job start Wed Apr 1 2020 01:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47541 * 2 1 4 4 N 1.46501 * 109.47186 * 239.99872 * 2 1 3 5 5 C 1.34780 * 119.99985 * 85.00117 * 4 2 1 6 6 O 1.21285 * 119.99917 * 0.02562 * 5 4 2 7 7 C 1.50697 * 120.00267 * 180.02562 * 5 4 2 8 8 S 1.81000 * 109.47233 * 179.97438 * 7 5 4 9 9 C 1.76194 * 99.99910 * 179.97438 * 8 7 5 10 10 H 1.08006 * 120.00542 * 359.97438 * 9 8 7 11 11 C 1.38800 * 119.99937 * 179.97438 * 9 8 7 12 12 N 1.31620 * 120.00004 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99845 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47359 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47237 * 120.00087 * 13 11 9 16 16 H 1.48507 * 109.47097 * 239.99709 * 13 11 9 17 17 C 1.53003 * 109.47486 * 119.99884 * 2 1 3 18 18 C 1.53035 * 109.46022 * 300.00267 * 17 2 1 19 19 C 1.53197 * 109.31578 * 181.38122 * 18 17 2 20 20 N 1.46923 * 108.77405 * 305.36457 * 19 18 17 21 21 C 1.34773 * 120.63332 * 233.58329 * 20 19 18 22 22 O 1.21356 * 119.99650 * 8.70371 * 21 20 19 23 23 C 1.49447 * 120.00354 * 188.70425 * 21 20 19 24 24 N 1.34781 * 120.00042 * 186.74410 * 23 21 20 25 25 O 1.21352 * 119.99904 * 6.74739 * 23 21 20 26 26 C 1.46930 * 118.73833 * 53.85708 * 20 19 18 27 27 C 1.53048 * 109.45623 * 60.06639 * 17 2 1 28 28 H 1.08999 * 109.47026 * 59.99929 * 1 2 3 29 29 H 1.08999 * 109.47062 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47070 * 299.99677 * 1 2 3 31 31 H 0.97003 * 120.00172 * 264.99774 * 4 2 1 32 32 H 1.09006 * 109.46824 * 299.99823 * 7 5 4 33 33 H 1.08999 * 109.47200 * 59.99137 * 7 5 4 34 34 H 0.97007 * 119.99890 * 180.02562 * 12 11 9 35 35 H 1.08996 * 109.45418 * 180.02562 * 17 2 1 36 36 H 1.09010 * 109.49858 * 61.43043 * 18 17 2 37 37 H 1.08995 * 109.52530 * 301.35158 * 18 17 2 38 38 H 1.08995 * 109.58468 * 185.57751 * 19 18 17 39 39 H 1.08995 * 109.70098 * 65.21800 * 19 18 17 40 40 H 0.97000 * 119.99374 * 180.02562 * 24 23 21 41 41 H 0.96997 * 119.99966 * 359.72497 * 24 23 21 42 42 H 1.08998 * 109.58856 * 65.92840 * 26 20 19 43 43 H 1.09005 * 109.58870 * 186.35032 * 26 20 19 44 44 H 1.08994 * 109.50003 * 298.56870 * 27 17 2 45 45 H 1.08999 * 109.49353 * 58.63369 * 27 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0183 -2.3572 6 8 1.8591 1.1586 -2.4115 7 6 2.6488 -0.7288 -3.5878 8 16 2.7092 0.4341 -4.9734 9 6 3.3125 -0.6310 -6.2407 10 1 3.5226 -1.6673 -6.0206 11 6 3.5177 -0.1384 -7.5220 12 7 3.2621 1.1246 -7.7902 13 14 4.1567 -1.2678 -8.8657 14 1 4.3640 -2.6295 -8.3107 15 1 3.1684 -1.3290 -9.9724 16 1 5.4462 -0.7427 -9.3821 17 6 2.0400 -0.7212 1.2492 18 6 1.5298 0.0004 2.4986 19 6 2.0706 -0.7039 3.7470 20 7 1.7086 -2.1264 3.6816 21 6 1.0560 -2.7165 4.7024 22 8 0.6226 -2.0442 5.6151 23 6 0.8660 -4.1989 4.7106 24 7 0.0987 -4.7747 5.6573 25 8 1.4026 -4.8840 3.8649 26 6 2.0770 -2.8948 2.4846 27 6 1.5311 -2.1646 1.2481 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.2490 -1.6318 -1.1526 32 1 3.6480 -1.1213 -3.3986 33 1 1.9760 -1.5506 -3.8325 34 1 3.4052 1.4688 -8.6858 35 1 3.1300 -0.7206 1.2491 36 1 0.4400 -0.0216 2.5119 37 1 1.8726 1.0349 2.4873 38 1 1.6317 -0.2558 4.6383 39 1 3.1554 -0.6043 3.7841 40 1 -0.0242 -5.7369 5.6628 41 1 -0.3269 -4.2275 6.3357 42 1 3.1623 -2.9701 2.4184 43 1 1.6423 -3.8927 2.5429 44 1 0.4415 -2.1662 1.2732 45 1 1.8750 -2.6708 0.3462 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001735475805.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:42:57 Heat of formation + Delta-G solvation = -131.249996 kcal Electronic energy + Delta-G solvation = -27491.364764 eV Core-core repulsion = 23441.060371 eV Total energy + Delta-G solvation = -4050.304393 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.03689 -40.94312 -39.74196 -38.96603 -36.70120 -34.77021 -34.58068 -33.81977 -32.11722 -31.51784 -29.76589 -27.65803 -27.40669 -25.54355 -24.42779 -23.27670 -21.76662 -21.22313 -20.28523 -19.79994 -18.87832 -18.25845 -17.88194 -17.45200 -17.15368 -16.98378 -16.87578 -16.42626 -16.21067 -15.93522 -15.74383 -15.28603 -15.18325 -14.86285 -14.75173 -14.50471 -14.41737 -14.26407 -13.78116 -13.45634 -13.24919 -13.14721 -13.02028 -12.91890 -12.85712 -12.59345 -12.42410 -12.00837 -11.85055 -11.70374 -11.57141 -11.38541 -11.15490 -10.91255 -10.87218 -10.26751 -10.25821 -10.11008 -9.80261 -8.65530 -8.34366 -6.11907 0.29811 1.28247 1.40600 1.41606 1.48198 1.59182 1.65568 2.07594 2.26493 2.32177 2.64473 2.99860 3.33231 3.46729 3.59478 3.74428 3.83468 3.98347 4.09453 4.20138 4.31655 4.33586 4.39262 4.45505 4.51935 4.53216 4.69863 4.82150 4.82415 4.90031 4.94999 4.99006 5.03724 5.17798 5.20825 5.34220 5.42793 5.49057 5.57169 5.72247 5.92225 6.16359 6.20595 6.54927 6.68983 7.00674 7.07210 7.29576 8.75023 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.022934 B = 0.001933 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.613912 B =14479.381729 C =15339.632165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.149 3.851 3 H 0.068 0.932 4 N -0.708 5.708 5 C 0.535 3.465 6 O -0.565 6.565 7 C -0.131 4.131 8 S -0.152 6.152 9 C -0.545 4.545 10 H 0.083 0.917 11 C 0.012 3.988 12 N -0.911 5.911 13 Si 0.999 3.001 14 H -0.256 1.256 15 H -0.274 1.274 16 H -0.274 1.274 17 C -0.085 4.085 18 C -0.123 4.123 19 C 0.108 3.892 20 N -0.576 5.576 21 C 0.501 3.499 22 O -0.548 6.548 23 C 0.514 3.486 24 N -0.800 5.800 25 O -0.534 6.534 26 C 0.073 3.927 27 C -0.130 4.130 28 H 0.030 0.970 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.413 0.587 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.271 0.729 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.423 0.577 41 H 0.422 0.578 42 H 0.080 0.920 43 H 0.134 0.866 44 H 0.072 0.928 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.799 -13.505 29.983 33.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.045 3.955 3 H 0.086 0.914 4 N -0.363 5.363 5 C 0.321 3.679 6 O -0.443 6.443 7 C -0.282 4.282 8 S 0.075 5.925 9 C -0.693 4.693 10 H 0.101 0.899 11 C -0.193 4.193 12 N -0.548 5.548 13 Si 0.821 3.179 14 H -0.180 1.180 15 H -0.200 1.200 16 H -0.200 1.200 17 C -0.104 4.104 18 C -0.161 4.161 19 C -0.013 4.013 20 N -0.308 5.308 21 C 0.284 3.716 22 O -0.426 6.426 23 C 0.293 3.707 24 N -0.367 5.367 25 O -0.413 6.413 26 C -0.048 4.048 27 C -0.168 4.168 28 H 0.049 0.951 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.251 0.749 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.080 0.920 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.258 0.742 41 H 0.254 0.746 42 H 0.098 0.902 43 H 0.151 0.849 44 H 0.090 0.910 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.107 -11.353 29.683 32.188 hybrid contribution 0.472 -1.871 -0.750 2.071 sum -4.635 -13.225 28.933 32.148 Atomic orbital electron populations 1.22238 0.95201 1.02726 1.01836 1.20968 0.94289 0.96652 0.83622 0.91387 1.45913 1.67447 1.14519 1.08405 1.20034 0.76652 0.86575 0.84668 1.90689 1.50709 1.17761 1.85176 1.23388 1.05512 1.03164 0.96123 1.85574 1.86698 1.17374 1.02833 1.23240 1.50708 0.98494 0.96816 0.89916 1.26133 0.95141 0.97211 1.00788 1.70189 1.46933 1.15481 1.22186 0.84904 0.77808 0.78247 0.76974 1.17992 1.19982 1.19964 1.21365 1.01379 0.95123 0.92521 1.21941 1.01762 1.00028 0.92382 1.21845 1.01144 0.78826 0.99523 1.48110 1.53965 1.11520 1.17204 1.20226 0.79426 0.88891 0.83066 1.90756 1.49277 1.65434 1.37151 1.20061 0.79695 0.88680 0.82236 1.43475 1.49234 1.13362 1.30583 1.90579 1.48817 1.64666 1.37207 1.22977 1.01912 0.97964 0.81975 1.22150 1.01724 0.94623 0.98336 0.95070 0.91015 0.90016 0.74894 0.87234 0.87380 0.92026 0.89374 0.90893 0.89109 0.89090 0.89334 0.74221 0.74613 0.90156 0.84887 0.90971 0.89354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.28 8.78 71.98 0.63 -2.65 16 2 C 0.15 3.04 2.40 44.99 0.11 3.15 16 3 H 0.07 1.74 7.58 -2.39 -0.02 1.72 16 4 N -0.71 -16.76 5.00 -442.53 -2.21 -18.97 16 5 C 0.53 19.23 7.81 87.66 0.68 19.91 16 6 O -0.57 -25.79 15.52 -3.04 -0.05 -25.84 16 7 C -0.13 -5.10 6.16 71.23 0.44 -4.66 16 8 S -0.15 -8.42 20.57 -56.49 -1.16 -9.58 16 9 C -0.54 -31.05 9.50 67.95 0.65 -30.41 16 10 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 11 C 0.01 0.68 5.49 84.86 0.47 1.14 16 12 N -0.91 -56.06 13.22 21.65 0.29 -55.77 16 13 Si 1.00 43.59 29.55 68.60 2.03 45.62 16 14 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 15 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 16 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 17 C -0.08 -1.11 2.14 -10.77 -0.02 -1.14 16 18 C -0.12 -1.44 4.96 30.67 0.15 -1.29 16 19 C 0.11 1.29 6.44 86.36 0.56 1.84 16 20 N -0.58 -7.91 2.97 -819.64 -2.43 -10.34 16 21 C 0.50 7.94 7.73 87.27 0.67 8.61 16 22 O -0.55 -10.75 15.93 -3.27 -0.05 -10.80 16 23 C 0.51 6.86 8.01 87.27 0.70 7.56 16 24 N -0.80 -4.98 8.87 -174.49 -1.55 -6.53 16 25 O -0.53 -9.20 14.01 -3.25 -0.05 -9.24 16 26 C 0.07 0.89 6.01 86.51 0.52 1.41 16 27 C -0.13 -1.50 4.83 30.82 0.15 -1.35 16 28 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.07 1.24 6.46 -2.39 -0.02 1.23 16 30 H 0.08 1.36 6.46 -2.39 -0.02 1.34 16 31 H 0.41 7.04 6.84 -92.71 -0.63 6.40 16 32 H 0.11 3.82 8.14 -2.39 -0.02 3.81 16 33 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 34 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 35 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 0.93 6.51 -2.38 -0.02 0.91 16 37 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.09 1.23 7.01 -2.39 -0.02 1.22 16 39 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.42 0.92 8.93 -92.71 -0.83 0.09 16 41 H 0.42 1.65 8.32 -92.71 -0.77 0.88 16 42 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.13 1.93 4.30 -48.55 -0.21 1.72 16 44 H 0.07 0.90 6.51 -2.39 -0.02 0.89 16 45 H 0.09 0.87 6.46 -2.39 -0.02 0.85 16 Total: -1.00 -81.63 375.73 -0.84 -82.47 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -1.36 Total: 16.84 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 5.70 Total: 2.14 kcal Atomic # 7 Polarization: -85.71 SS G_CDS: -5.90 Total: -91.61 kcal Atomic # 8 Polarization: -45.73 SS G_CDS: -0.14 Total: -45.88 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.16 Total: -9.58 kcal Total: -81.63 -0.84 -82.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735475805.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.780 kcal (2) G-P(sol) polarization free energy of solvation -81.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds