Wall clock time and date at job start Wed Apr 1 2020 02:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46765 * 124.34844 * 2 1 4 4 C 1.54480 * 105.47306 * 163.00486 * 3 2 1 5 5 C 1.54637 * 101.79655 * 25.39729 * 4 3 2 6 6 H 1.09001 * 110.48391 * 93.89928 * 5 4 3 7 7 C 1.53000 * 110.48490 * 216.54150 * 5 4 3 8 8 C 1.50695 * 109.47099 * 185.00220 * 7 5 4 9 9 O 1.21280 * 119.99994 * 359.97438 * 8 7 5 10 10 N 1.34774 * 120.00081 * 179.97438 * 8 7 5 11 11 C 1.46497 * 120.00025 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.47337 * 180.02562 * 11 10 8 13 13 N 1.46507 * 109.47603 * 179.97438 * 12 11 10 14 14 C 1.34774 * 120.00291 * 179.97438 * 13 12 11 15 15 O 1.21280 * 119.99924 * 0.02562 * 14 13 12 16 16 C 1.50695 * 120.00081 * 180.02562 * 14 13 12 17 17 S 1.80995 * 109.47363 * 180.02562 * 16 14 13 18 18 C 1.76201 * 100.00217 * 179.97438 * 17 16 14 19 19 H 1.07992 * 119.99830 * 0.02562 * 18 17 16 20 20 C 1.38798 * 119.99957 * 179.97438 * 18 17 16 21 21 N 1.31638 * 120.00261 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99998 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47120 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47503 * 119.99953 * 22 20 18 25 25 H 1.48507 * 109.47348 * 240.00193 * 22 20 18 26 26 C 1.34412 * 124.35012 * 180.02562 * 2 1 3 27 27 O 1.21283 * 124.94095 * 0.38910 * 26 2 1 28 28 H 1.08997 * 109.47143 * 89.99850 * 1 2 3 29 29 H 1.08999 * 109.46787 * 209.99873 * 1 2 3 30 30 H 1.09004 * 109.46951 * 330.00108 * 1 2 3 31 31 H 1.09000 * 110.24541 * 44.00914 * 3 2 1 32 32 H 1.08995 * 110.32113 * 282.04470 * 3 2 1 33 33 H 1.09002 * 110.96988 * 143.53587 * 4 3 2 34 34 H 1.09003 * 110.97155 * 267.26099 * 4 3 2 35 35 H 1.09005 * 109.47162 * 304.99971 * 7 5 4 36 36 H 1.09002 * 109.47070 * 64.99877 * 7 5 4 37 37 H 0.97000 * 120.00278 * 359.97438 * 10 8 7 38 38 H 1.09003 * 109.47450 * 299.99852 * 11 10 8 39 39 H 1.09002 * 109.47447 * 60.00018 * 11 10 8 40 40 H 1.08998 * 109.47300 * 300.00036 * 12 11 10 41 41 H 1.09007 * 109.47395 * 60.00142 * 12 11 10 42 42 H 0.97000 * 119.99241 * 0.02562 * 13 12 11 43 43 H 1.09005 * 109.46910 * 300.00004 * 16 14 13 44 44 H 1.09002 * 109.47440 * 59.99982 * 16 14 13 45 45 H 0.96997 * 119.99663 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7012 0.7487 0.4352 5 6 3.6905 -0.7381 0.0100 6 1 4.1202 -0.8533 -0.9851 7 6 4.4527 -1.5911 1.0260 8 6 4.5338 -3.0114 0.5292 9 8 4.0310 -3.3120 -0.5328 10 7 5.1650 -3.9477 1.2649 11 6 5.2433 -5.3287 0.7822 12 6 6.0056 -6.1816 1.7981 13 7 6.0834 -7.5628 1.3156 14 6 6.7146 -8.4991 2.0514 15 8 7.2177 -8.1984 3.1132 16 6 6.7951 -9.9196 1.5549 17 16 7.6968 -10.9288 2.7568 18 6 7.6412 -12.4924 1.9465 19 1 7.1463 -12.5883 0.9914 20 6 8.2346 -13.6005 2.5351 21 7 8.8384 -13.4835 3.6989 22 14 8.1763 -15.2580 1.6757 23 1 7.4451 -15.1237 0.3901 24 1 9.5602 -15.7272 1.4107 25 1 7.4779 -16.2409 2.5426 26 6 2.2235 -1.1097 -0.0005 27 8 1.7946 -2.2442 -0.0078 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.8987 1.9381 0.7105 32 1 2.3306 1.6446 -0.9996 33 1 4.4754 1.3011 -0.0973 34 1 3.8276 0.8451 1.5135 35 1 5.4593 -1.1924 1.1527 36 1 3.9305 -1.5699 1.9826 37 1 5.5675 -3.7073 2.1141 38 1 4.2366 -5.7273 0.6563 39 1 5.7648 -5.3501 -0.1748 40 1 7.0123 -5.7833 1.9244 41 1 5.4837 -6.1603 2.7549 42 1 5.6813 -7.8031 0.4663 43 1 5.7883 -10.3181 1.4290 44 1 7.3166 -9.9411 0.5980 45 1 9.2533 -14.2579 4.1100 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001736673108.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:17 Heat of formation + Delta-G solvation = -107.397224 kcal Electronic energy + Delta-G solvation = -26094.222805 eV Core-core repulsion = 22044.952745 eV Total energy + Delta-G solvation = -4049.270059 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.09971 -39.65742 -39.07398 -36.70126 -35.92125 -34.24096 -33.87849 -32.42079 -30.83368 -29.91279 -28.02178 -27.35234 -25.71879 -25.42258 -22.85616 -22.06561 -21.05386 -20.26416 -19.62541 -17.96256 -17.62786 -17.09972 -16.86293 -16.49771 -16.13912 -15.87775 -15.66404 -15.40890 -15.13183 -14.79521 -14.43568 -14.23661 -14.17351 -13.84718 -13.71762 -13.40486 -13.14941 -13.10263 -12.76638 -12.72176 -12.55816 -12.45473 -12.14076 -12.05261 -11.88636 -11.60260 -11.50454 -11.06013 -11.01264 -10.75183 -10.15604 -9.87699 -9.80055 -9.45722 -9.31199 -9.13657 -9.07391 -8.95606 -8.23289 -6.49619 -6.21266 -3.91755 2.30531 2.48706 2.58098 2.65686 3.06482 3.15702 3.22635 3.30393 3.37641 3.74944 3.84911 3.86385 4.15637 4.21047 4.34935 4.51147 4.60619 4.69449 4.76293 4.87850 4.90470 4.92797 4.99661 5.04430 5.14198 5.15236 5.20003 5.24225 5.28007 5.30997 5.51717 5.60843 5.70498 5.81484 5.90131 6.08182 6.13586 6.15533 6.53639 6.69378 7.21904 7.60836 7.64992 7.90220 8.04857 8.36369 8.56601 9.24435 10.86262 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.036077 B = 0.001400 C = 0.001372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.927199 B =19994.879223 C =20401.247811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.632 5.632 3 C 0.103 3.897 4 C -0.130 4.130 5 C -0.108 4.108 6 H 0.117 0.883 7 C -0.123 4.123 8 C 0.511 3.489 9 O -0.514 6.514 10 N -0.731 5.731 11 C 0.111 3.889 12 C 0.112 3.888 13 N -0.736 5.736 14 C 0.534 3.466 15 O -0.517 6.517 16 C -0.153 4.153 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.074 0.926 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.516 3.484 27 O -0.501 6.501 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.402 0.598 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.401 0.599 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.391 34.947 -7.372 37.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.369 5.369 3 C -0.020 4.020 4 C -0.168 4.168 5 C -0.130 4.130 6 H 0.135 0.865 7 C -0.163 4.163 8 C 0.296 3.704 9 O -0.388 6.388 10 N -0.385 5.385 11 C -0.013 4.013 12 C -0.013 4.013 13 N -0.392 5.392 14 C 0.320 3.680 15 O -0.391 6.391 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.092 0.908 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C 0.302 3.698 27 O -0.373 6.373 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.124 0.876 36 H 0.114 0.886 37 H 0.236 0.764 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.235 0.765 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.156 34.510 -6.242 37.117 hybrid contribution -0.684 -1.291 -1.756 2.284 sum -12.840 33.219 -7.998 36.501 Atomic orbital electron populations 1.21516 0.78091 1.03010 1.01853 1.48187 1.06437 1.07369 1.74895 1.22060 0.90550 0.87471 1.01904 1.22721 0.96812 0.94366 1.02878 1.21745 0.94203 0.94957 1.02060 0.86488 1.21518 1.02708 0.92299 0.99809 1.20424 0.77862 0.87111 0.84953 1.90769 1.44072 1.81628 1.22301 1.45749 1.58917 1.09062 1.24806 1.21405 1.01319 0.81145 0.97467 1.21321 1.00779 0.82044 0.97186 1.45816 1.59959 1.08346 1.25084 1.20315 0.76888 0.86626 0.84127 1.90702 1.44960 1.81463 1.21974 1.23531 1.05995 0.94781 1.06099 1.85380 1.70035 1.02687 1.25309 1.22917 1.42197 0.94386 1.08822 0.90819 1.24993 0.94511 0.99097 0.94980 1.70031 1.33961 1.30837 1.15498 0.86110 0.78002 0.82024 0.79317 1.19598 1.20571 1.20564 1.20751 0.88799 0.84448 0.75783 1.90795 1.77988 1.20704 1.47845 0.92724 0.90705 0.91148 0.90317 0.91088 0.88759 0.89569 0.87622 0.88556 0.76433 0.90744 0.90824 0.91004 0.91026 0.76469 0.89056 0.89061 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.55 10.96 59.85 0.66 1.20 16 2 N -0.63 -4.39 3.33 -180.26 -0.60 -4.99 16 3 C 0.10 0.32 7.35 -3.12 -0.02 0.30 16 4 C -0.13 -0.31 6.70 -25.09 -0.17 -0.48 16 5 C -0.11 -0.68 2.54 -90.60 -0.23 -0.91 16 6 H 0.12 0.83 7.90 -51.93 -0.41 0.42 16 7 C -0.12 -0.70 5.09 -27.89 -0.14 -0.84 16 8 C 0.51 5.13 7.30 -10.99 -0.08 5.05 16 9 O -0.51 -7.50 14.05 -15.84 -0.22 -7.72 16 10 N -0.73 -6.15 5.56 -60.30 -0.33 -6.48 16 11 C 0.11 1.08 5.79 -4.05 -0.02 1.06 16 12 C 0.11 1.24 5.79 -4.04 -0.02 1.21 16 13 N -0.74 -9.78 5.56 -60.29 -0.33 -10.11 16 14 C 0.53 9.93 7.85 -10.99 -0.09 9.84 16 15 O -0.52 -11.62 15.86 5.56 0.09 -11.53 16 16 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 17 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 18 C -0.53 -15.33 9.50 30.94 0.29 -15.04 16 19 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 22 Si 0.92 21.55 29.55 -169.99 -5.02 16.53 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 C 0.52 5.21 7.29 -10.84 -0.08 5.13 16 27 O -0.50 -7.56 15.20 -15.85 -0.24 -7.80 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.53 7.93 -51.93 -0.41 0.12 16 30 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 32 H 0.07 0.17 8.14 -51.93 -0.42 -0.26 16 33 H 0.09 0.06 8.14 -51.93 -0.42 -0.37 16 34 H 0.09 0.12 7.91 -51.93 -0.41 -0.30 16 35 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.10 0.47 8.12 -51.93 -0.42 0.04 16 37 H 0.40 2.25 8.47 -40.82 -0.35 1.91 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.40 4.26 8.47 -40.82 -0.35 3.91 16 43 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 44 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 45 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 394.65 15.07 5.95 5.95 Total: -1.00 -41.33 394.65 -8.94 -50.28 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -6.96 Total: -0.38 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 0.22 Total: 5.66 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: -0.54 Total: -47.11 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.38 Total: -27.06 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -41.33 -8.94 -50.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001736673108.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.120 kcal (2) G-P(sol) polarization free energy of solvation -41.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds