Wall clock time and date at job start Wed Apr 1 2020 02:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46765 * 124.34844 * 2 1 4 4 C 1.54480 * 105.47306 * 163.00486 * 3 2 1 5 5 C 1.54637 * 101.79655 * 25.39729 * 4 3 2 6 6 H 1.09001 * 110.48391 * 93.89928 * 5 4 3 7 7 C 1.53000 * 110.48490 * 216.54150 * 5 4 3 8 8 C 1.50695 * 109.47099 * 185.00220 * 7 5 4 9 9 O 1.21280 * 119.99994 * 359.97438 * 8 7 5 10 10 N 1.34774 * 120.00081 * 179.97438 * 8 7 5 11 11 C 1.46497 * 120.00025 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.47337 * 180.02562 * 11 10 8 13 13 N 1.46507 * 109.47603 * 179.97438 * 12 11 10 14 14 C 1.34774 * 120.00291 * 179.97438 * 13 12 11 15 15 O 1.21280 * 119.99924 * 0.02562 * 14 13 12 16 16 C 1.50695 * 120.00081 * 180.02562 * 14 13 12 17 17 S 1.80995 * 109.47363 * 180.02562 * 16 14 13 18 18 C 1.76201 * 100.00217 * 179.97438 * 17 16 14 19 19 H 1.07992 * 119.99830 * 0.02562 * 18 17 16 20 20 C 1.38798 * 119.99957 * 179.97438 * 18 17 16 21 21 N 1.31638 * 120.00261 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99998 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47120 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47503 * 119.99953 * 22 20 18 25 25 H 1.48507 * 109.47348 * 240.00193 * 22 20 18 26 26 C 1.34412 * 124.35012 * 180.02562 * 2 1 3 27 27 O 1.21283 * 124.94095 * 0.38910 * 26 2 1 28 28 H 1.08997 * 109.47143 * 89.99850 * 1 2 3 29 29 H 1.08999 * 109.46787 * 209.99873 * 1 2 3 30 30 H 1.09004 * 109.46951 * 330.00108 * 1 2 3 31 31 H 1.09000 * 110.24541 * 44.00914 * 3 2 1 32 32 H 1.08995 * 110.32113 * 282.04470 * 3 2 1 33 33 H 1.09002 * 110.96988 * 143.53587 * 4 3 2 34 34 H 1.09003 * 110.97155 * 267.26099 * 4 3 2 35 35 H 1.09005 * 109.47162 * 304.99971 * 7 5 4 36 36 H 1.09002 * 109.47070 * 64.99877 * 7 5 4 37 37 H 0.97000 * 120.00278 * 359.97438 * 10 8 7 38 38 H 1.09003 * 109.47450 * 299.99852 * 11 10 8 39 39 H 1.09002 * 109.47447 * 60.00018 * 11 10 8 40 40 H 1.08998 * 109.47300 * 300.00036 * 12 11 10 41 41 H 1.09007 * 109.47395 * 60.00142 * 12 11 10 42 42 H 0.97000 * 119.99241 * 0.02562 * 13 12 11 43 43 H 1.09005 * 109.46910 * 300.00004 * 16 14 13 44 44 H 1.09002 * 109.47440 * 59.99982 * 16 14 13 45 45 H 0.96997 * 119.99663 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7012 0.7487 0.4352 5 6 3.6905 -0.7381 0.0100 6 1 4.1202 -0.8533 -0.9851 7 6 4.4527 -1.5911 1.0260 8 6 4.5338 -3.0114 0.5292 9 8 4.0310 -3.3120 -0.5328 10 7 5.1650 -3.9477 1.2649 11 6 5.2433 -5.3287 0.7822 12 6 6.0056 -6.1816 1.7981 13 7 6.0834 -7.5628 1.3156 14 6 6.7146 -8.4991 2.0514 15 8 7.2177 -8.1984 3.1132 16 6 6.7951 -9.9196 1.5549 17 16 7.6968 -10.9288 2.7568 18 6 7.6412 -12.4924 1.9465 19 1 7.1463 -12.5883 0.9914 20 6 8.2346 -13.6005 2.5351 21 7 8.8384 -13.4835 3.6989 22 14 8.1763 -15.2580 1.6757 23 1 7.4451 -15.1237 0.3901 24 1 9.5602 -15.7272 1.4107 25 1 7.4779 -16.2409 2.5426 26 6 2.2235 -1.1097 -0.0005 27 8 1.7946 -2.2442 -0.0078 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.8987 1.9381 0.7105 32 1 2.3306 1.6446 -0.9996 33 1 4.4754 1.3011 -0.0973 34 1 3.8276 0.8451 1.5135 35 1 5.4593 -1.1924 1.1527 36 1 3.9305 -1.5699 1.9826 37 1 5.5675 -3.7073 2.1141 38 1 4.2366 -5.7273 0.6563 39 1 5.7648 -5.3501 -0.1748 40 1 7.0123 -5.7833 1.9244 41 1 5.4837 -6.1603 2.7549 42 1 5.6813 -7.8031 0.4663 43 1 5.7883 -10.3181 1.4290 44 1 7.3166 -9.9411 0.5980 45 1 9.2533 -14.2579 4.1100 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001736673108.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:16 Heat of formation + Delta-G solvation = -140.012369 kcal Electronic energy + Delta-G solvation = -26095.637103 eV Core-core repulsion = 22044.952745 eV Total energy + Delta-G solvation = -4050.684358 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.68439 -40.73653 -40.18810 -37.37873 -36.95740 -34.98598 -34.74018 -34.58531 -31.82884 -30.79958 -29.08685 -27.85993 -27.65008 -26.18931 -23.73592 -22.47773 -22.04125 -21.38763 -20.22541 -19.86455 -18.34209 -17.93209 -17.73453 -17.40050 -17.07326 -16.94550 -16.87242 -16.70277 -16.33523 -16.01721 -15.67629 -15.34562 -14.86875 -14.69550 -14.62134 -14.48843 -14.39939 -14.01536 -13.70868 -13.40729 -13.24692 -13.18326 -13.16401 -12.93478 -12.88866 -12.85412 -12.61622 -12.59656 -12.30761 -11.80520 -11.72090 -11.16043 -11.11763 -10.88224 -10.57333 -10.28551 -10.23184 -10.07903 -9.66024 -8.66804 -8.35359 -6.13126 1.24460 1.41152 1.44663 1.56496 1.57095 1.62912 1.76546 1.93707 2.14155 2.26707 2.59519 2.99015 3.31266 3.39673 3.50735 3.61399 3.84493 3.96130 3.99140 3.99746 4.25348 4.29737 4.34709 4.38505 4.39149 4.51332 4.52646 4.57836 4.65954 4.77308 4.81367 4.82881 4.87144 4.89232 5.13170 5.25841 5.29487 5.42239 5.44771 5.64370 6.16421 6.19885 6.41143 6.57578 7.06400 7.17345 7.25402 7.35581 8.74152 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.036077 B = 0.001400 C = 0.001372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.927199 B =19994.879223 C =20401.247811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.632 5.632 3 C 0.095 3.905 4 C -0.115 4.115 5 C -0.108 4.108 6 H 0.105 0.895 7 C -0.116 4.116 8 C 0.502 3.498 9 O -0.566 6.566 10 N -0.723 5.723 11 C 0.122 3.878 12 C 0.118 3.882 13 N -0.714 5.714 14 C 0.538 3.462 15 O -0.561 6.561 16 C -0.132 4.132 17 S -0.148 6.148 18 C -0.548 4.548 19 H 0.082 0.918 20 C 0.015 3.985 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.258 1.258 24 H -0.273 1.273 25 H -0.274 1.274 26 C 0.497 3.503 27 O -0.567 6.567 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.120 0.880 34 H 0.105 0.895 35 H 0.147 0.853 36 H 0.109 0.891 37 H 0.417 0.583 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.417 0.583 43 H 0.109 0.891 44 H 0.111 0.889 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.404 37.216 -8.259 40.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.367 5.367 3 C -0.026 4.026 4 C -0.152 4.152 5 C -0.130 4.130 6 H 0.123 0.877 7 C -0.156 4.156 8 C 0.290 3.710 9 O -0.444 6.444 10 N -0.378 5.378 11 C -0.003 4.003 12 C -0.006 4.006 13 N -0.368 5.368 14 C 0.323 3.677 15 O -0.439 6.439 16 C -0.283 4.283 17 S 0.079 5.921 18 C -0.695 4.695 19 H 0.100 0.900 20 C -0.190 4.190 21 N -0.547 5.547 22 Si 0.820 3.180 23 H -0.182 1.182 24 H -0.198 1.198 25 H -0.199 1.199 26 C 0.285 3.715 27 O -0.445 6.445 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.099 0.901 33 H 0.139 0.861 34 H 0.123 0.877 35 H 0.165 0.835 36 H 0.127 0.873 37 H 0.254 0.746 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.254 0.746 43 H 0.128 0.872 44 H 0.130 0.870 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.183 36.876 -7.141 39.487 hybrid contribution -0.778 -1.832 -1.533 2.512 sum -12.960 35.044 -8.674 38.357 Atomic orbital electron populations 1.21615 0.77911 1.03482 1.02009 1.48447 1.07077 1.08085 1.73076 1.22405 0.90526 0.86287 1.03419 1.22791 0.96988 0.91104 1.04366 1.21790 0.91439 0.97818 1.01914 0.87698 1.21628 1.05066 0.89210 0.99716 1.21291 0.76632 0.88853 0.84261 1.90750 1.46193 1.82679 1.24731 1.45698 1.58524 1.08241 1.25314 1.21171 1.00227 0.81849 0.97036 1.21376 1.01291 0.80604 0.97364 1.45558 1.57918 1.08478 1.24880 1.19998 0.77147 0.86662 0.83846 1.90692 1.47303 1.81977 1.23940 1.23382 1.05851 0.94668 1.04382 1.85518 1.72179 1.04831 1.29552 1.23249 1.42381 0.94785 1.09120 0.89975 1.26106 0.93764 1.03517 0.95635 1.70185 1.34981 1.32241 1.17304 0.84910 0.78355 0.76288 0.78414 1.18188 1.19844 1.19918 1.21563 0.90862 0.84165 0.74939 1.90745 1.79387 1.23314 1.51070 0.92781 0.92979 0.87876 0.87797 0.90055 0.86123 0.87700 0.83542 0.87326 0.74614 0.92066 0.90795 0.90426 0.91150 0.74606 0.87240 0.87046 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.00 10.96 127.77 1.40 2.40 16 2 N -0.63 -8.20 3.33 -842.82 -2.81 -11.01 16 3 C 0.10 0.31 7.35 86.83 0.64 0.94 16 4 C -0.12 -0.12 6.70 31.65 0.21 0.09 16 5 C -0.11 -1.21 2.54 -10.78 -0.03 -1.24 16 6 H 0.11 1.44 7.90 -2.39 -0.02 1.42 16 7 C -0.12 -1.08 5.09 29.85 0.15 -0.93 16 8 C 0.50 9.82 7.30 87.66 0.64 10.46 16 9 O -0.57 -17.09 14.05 17.43 0.24 -16.85 16 10 N -0.72 -11.36 5.56 -463.08 -2.57 -13.93 16 11 C 0.12 2.29 5.79 86.38 0.50 2.79 16 12 C 0.12 2.46 5.79 86.38 0.50 2.96 16 13 N -0.71 -17.96 5.56 -463.06 -2.57 -20.53 16 14 C 0.54 19.66 7.85 87.66 0.69 20.34 16 15 O -0.56 -25.46 15.86 -3.03 -0.05 -25.50 16 16 C -0.13 -5.23 6.16 71.23 0.44 -4.80 16 17 S -0.15 -8.23 20.57 -56.49 -1.16 -9.40 16 18 C -0.55 -31.50 9.50 67.95 0.65 -30.86 16 19 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 20 C 0.01 0.83 5.49 84.86 0.47 1.30 16 21 N -0.91 -56.07 13.22 21.65 0.29 -55.78 16 22 Si 1.00 43.99 29.55 68.60 2.03 46.02 16 23 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 26 C 0.50 10.18 7.29 87.92 0.64 10.82 16 27 O -0.57 -18.33 15.20 17.42 0.26 -18.06 16 28 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.05 0.81 7.93 -2.39 -0.02 0.79 16 30 H 0.10 0.41 8.14 -2.38 -0.02 0.39 16 31 H 0.10 -0.13 8.14 -2.39 -0.02 -0.15 16 32 H 0.08 0.13 8.14 -2.39 -0.02 0.11 16 33 H 0.12 -0.43 8.14 -2.39 -0.02 -0.45 16 34 H 0.10 -0.22 7.91 -2.39 -0.02 -0.24 16 35 H 0.15 0.15 8.14 -2.38 -0.02 0.13 16 36 H 0.11 0.79 8.12 -2.39 -0.02 0.77 16 37 H 0.42 3.88 8.47 -92.71 -0.79 3.09 16 38 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 42 H 0.42 8.06 8.47 -92.71 -0.79 7.28 16 43 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 44 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 45 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -96.15 394.65 0.00 -96.15 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -0.55 Total: 14.59 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: 6.89 Total: 14.30 kcal Atomic # 7 Polarization: -93.59 SS G_CDS: -7.67 Total: -101.26 kcal Atomic # 8 Polarization: -60.88 SS G_CDS: 0.46 Total: -60.41 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: -8.23 SS G_CDS: -1.16 Total: -9.40 kcal Total: -96.15 0.00 -96.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001736673108.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.859 kcal (2) G-P(sol) polarization free energy of solvation -96.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds