Wall clock time and date at job start Wed Apr 1 2020 02:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46765 * 124.35294 * 2 1 4 4 C 1.54661 * 105.38357 * 162.85294 * 3 2 1 5 5 C 1.54631 * 101.68464 * 25.76826 * 4 3 2 6 6 H 1.08996 * 110.48647 * 216.30856 * 5 4 3 7 7 C 1.52997 * 110.48684 * 93.66426 * 5 4 3 8 8 C 1.50703 * 109.47136 * 178.77376 * 7 5 4 9 9 O 1.21284 * 119.99815 * 359.97438 * 8 7 5 10 10 N 1.34775 * 120.00430 * 180.02562 * 8 7 5 11 11 C 1.46496 * 120.00584 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47289 * 179.97438 * 11 10 8 13 13 N 1.46505 * 109.46911 * 179.97438 * 12 11 10 14 14 C 1.34771 * 119.99694 * 179.97438 * 13 12 11 15 15 O 1.21283 * 120.00427 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.99688 * 180.02562 * 14 13 12 17 17 S 1.81006 * 109.47017 * 180.02562 * 16 14 13 18 18 C 1.76200 * 99.99996 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99693 * 0.02562 * 18 17 16 20 20 C 1.38797 * 119.99980 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00107 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99882 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.46972 * 90.00715 * 22 20 18 24 24 H 1.48502 * 109.47142 * 210.00145 * 22 20 18 25 25 H 1.48495 * 109.47431 * 330.00678 * 22 20 18 26 26 C 1.34425 * 124.34592 * 180.29720 * 2 1 3 27 27 O 1.21281 * 124.94631 * 0.43075 * 26 2 1 28 28 H 1.09002 * 109.47391 * 179.72585 * 1 2 3 29 29 H 1.09001 * 109.46813 * 59.72641 * 1 2 3 30 30 H 1.09004 * 109.47041 * 299.72768 * 1 2 3 31 31 H 1.09002 * 110.24161 * 281.98194 * 3 2 1 32 32 H 1.08992 * 110.24467 * 43.98011 * 3 2 1 33 33 H 1.08990 * 111.19484 * 267.59523 * 4 3 2 34 34 H 1.09004 * 110.81740 * 143.77355 * 4 3 2 35 35 H 1.08998 * 109.47297 * 298.76952 * 7 5 4 36 36 H 1.08995 * 109.47108 * 58.77239 * 7 5 4 37 37 H 0.97005 * 119.99855 * 359.97438 * 10 8 7 38 38 H 1.08998 * 109.46669 * 299.99616 * 11 10 8 39 39 H 1.09001 * 109.46744 * 59.99327 * 11 10 8 40 40 H 1.08998 * 109.47297 * 299.99654 * 12 11 10 41 41 H 1.08995 * 109.47108 * 59.99941 * 12 11 10 42 42 H 0.97000 * 120.00154 * 0.02562 * 13 12 11 43 43 H 1.09004 * 109.47681 * 299.99972 * 16 14 13 44 44 H 1.09001 * 109.47479 * 60.00255 * 16 14 13 45 45 H 0.97003 * 120.00647 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2932 1.2117 0.0000 4 6 3.7011 0.7463 0.4396 5 6 3.6898 -0.7380 0.0063 6 1 4.2326 -1.3498 0.7267 7 6 4.2929 -0.8924 -1.3913 8 6 4.2982 -2.3489 -1.7781 9 8 3.8629 -3.1815 -1.0111 10 7 4.7876 -2.7264 -2.9758 11 6 4.7933 -4.1424 -3.3515 12 6 5.3962 -4.2967 -4.7492 13 7 5.4025 -5.7128 -5.1246 14 6 5.8910 -6.0901 -6.3227 15 8 6.3259 -5.2575 -7.0898 16 6 5.8968 -7.5467 -6.7091 17 16 6.6103 -7.7294 -8.3625 18 6 6.4970 -9.4774 -8.5533 19 1 6.0769 -10.0808 -7.7621 20 6 6.9466 -10.0787 -9.7206 21 7 7.4581 -9.3433 -10.6850 22 14 6.8258 -11.9318 -9.9231 23 1 5.5209 -12.2781 -10.5418 24 1 7.9291 -12.4073 -10.7960 25 1 6.9312 -12.5831 -8.5928 26 6 2.2234 -1.1099 -0.0058 27 8 1.7946 -2.2442 -0.0191 28 1 -0.3634 -1.0276 -0.0049 29 1 -0.3633 0.5181 -0.8875 30 1 -0.3633 0.5096 0.8925 31 1 2.3307 1.6428 -1.0004 32 1 1.8985 1.9382 0.7101 33 1 3.8269 0.8367 1.5185 34 1 4.4754 1.3014 -0.0899 35 1 3.6968 -0.3282 -2.1086 36 1 5.3147 -0.5130 -1.3900 37 1 5.1360 -2.0605 -3.5890 38 1 5.3893 -4.7062 -2.6340 39 1 3.7715 -4.5219 -3.3529 40 1 4.7998 -3.7329 -5.4665 41 1 6.4179 -3.9170 -4.7480 42 1 5.0543 -6.3788 -4.5112 43 1 6.4936 -8.1106 -5.9920 44 1 4.8752 -7.9266 -6.7099 45 1 7.7727 -9.7635 -11.5007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001736673109.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:20 Heat of formation + Delta-G solvation = -106.241924 kcal Electronic energy + Delta-G solvation = -26188.124023 eV Core-core repulsion = 22138.904061 eV Total energy + Delta-G solvation = -4049.219962 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.15757 -39.67572 -39.09267 -36.72055 -35.94994 -34.17189 -33.91101 -32.42851 -30.80675 -29.86759 -28.03121 -27.30601 -25.92801 -25.45326 -22.91684 -21.97554 -21.06198 -20.28508 -19.72585 -18.01505 -17.62236 -16.92967 -16.76063 -16.41927 -16.34869 -15.87916 -15.70319 -15.46904 -15.11210 -14.79990 -14.46255 -14.35473 -13.93954 -13.86575 -13.76023 -13.55165 -13.16655 -13.05369 -12.81440 -12.77071 -12.56798 -12.51783 -12.23216 -12.00083 -11.78271 -11.63598 -11.47163 -11.05859 -11.02341 -10.76319 -10.19164 -9.85417 -9.81689 -9.47498 -9.35948 -9.11944 -9.07461 -8.97696 -8.24749 -6.50537 -6.21719 -3.92452 2.29433 2.42053 2.58795 2.61919 3.04655 3.13643 3.23115 3.29397 3.35854 3.73289 3.85560 3.91271 4.13216 4.20566 4.34058 4.46277 4.51897 4.71080 4.75288 4.86529 4.90333 4.92422 4.95916 5.03131 5.13423 5.13745 5.21557 5.24490 5.29929 5.32161 5.49085 5.59205 5.67157 5.78575 5.88836 6.08094 6.10807 6.14068 6.51367 6.71504 7.16169 7.59761 7.62970 7.91668 8.00114 8.35455 8.54703 9.23796 10.85728 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.032565 B = 0.001431 C = 0.001408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.617365 B =19556.526302 C =19887.957374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.633 5.633 3 C 0.102 3.898 4 C -0.130 4.130 5 C -0.108 4.108 6 H 0.113 0.887 7 C -0.123 4.123 8 C 0.500 3.500 9 O -0.504 6.504 10 N -0.731 5.731 11 C 0.111 3.889 12 C 0.112 3.888 13 N -0.737 5.737 14 C 0.534 3.466 15 O -0.517 6.517 16 C -0.154 4.154 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.514 3.486 27 O -0.494 6.494 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.108 0.892 37 H 0.402 0.598 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.401 0.599 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.259 25.599 24.321 36.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.370 5.370 3 C -0.021 4.021 4 C -0.168 4.168 5 C -0.130 4.130 6 H 0.131 0.869 7 C -0.164 4.164 8 C 0.285 3.715 9 O -0.377 6.377 10 N -0.385 5.385 11 C -0.014 4.014 12 C -0.013 4.013 13 N -0.392 5.392 14 C 0.321 3.679 15 O -0.391 6.391 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C 0.300 3.700 27 O -0.366 6.366 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.126 0.874 37 H 0.236 0.764 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.236 0.764 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.102 25.740 23.421 35.971 hybrid contribution -0.644 -1.966 0.663 2.172 sum -9.746 23.774 24.084 35.217 Atomic orbital electron populations 1.21529 0.78188 1.03801 1.01266 1.48218 1.06421 1.07359 1.74985 1.22095 0.90657 0.87535 1.01821 1.22736 0.96775 0.94438 1.02827 1.21720 0.95140 0.97904 0.98241 0.86851 1.21530 1.03779 0.94484 0.96604 1.20578 0.78084 0.91289 0.81572 1.90875 1.43417 1.53249 1.50152 1.45778 1.65064 1.08807 1.18895 1.21416 1.02100 0.82495 0.95369 1.21315 1.01664 0.83930 0.94402 1.45816 1.66248 1.07811 1.19346 1.20321 0.76341 0.90974 0.80304 1.90703 1.44727 1.53462 1.50209 1.23535 1.05725 0.94119 1.07042 1.85375 1.79407 1.09439 1.09153 1.22876 1.47965 0.91968 1.05612 0.90868 1.24988 0.94474 0.99283 0.94798 1.70014 1.38391 1.35734 1.06181 0.86162 0.77973 0.83051 0.78280 1.20265 1.20746 1.19680 1.20751 0.88752 0.84488 0.75988 1.90810 1.77812 1.20630 1.47318 0.89949 0.92216 0.92222 0.91089 0.90369 0.89463 0.88739 0.88609 0.87386 0.76424 0.90729 0.90781 0.91047 0.90985 0.76449 0.89045 0.89055 0.92180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.54 11.14 59.85 0.67 1.20 16 2 N -0.63 -4.38 3.33 -180.17 -0.60 -4.98 16 3 C 0.10 0.31 7.35 -3.02 -0.02 0.29 16 4 C -0.13 -0.32 6.72 -25.00 -0.17 -0.49 16 5 C -0.11 -0.69 2.57 -90.63 -0.23 -0.92 16 6 H 0.11 0.85 8.02 -51.93 -0.42 0.44 16 7 C -0.12 -0.64 5.12 -27.88 -0.14 -0.78 16 8 C 0.50 4.80 7.61 -10.98 -0.08 4.72 16 9 O -0.50 -7.31 13.68 -16.70 -0.23 -7.54 16 10 N -0.73 -5.79 5.56 -60.30 -0.33 -6.13 16 11 C 0.11 1.04 5.79 -4.05 -0.02 1.02 16 12 C 0.11 1.20 5.79 -4.04 -0.02 1.18 16 13 N -0.74 -9.62 5.56 -60.30 -0.33 -9.96 16 14 C 0.53 9.84 7.85 -10.99 -0.09 9.75 16 15 O -0.52 -11.53 15.86 5.56 0.09 -11.44 16 16 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 17 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 18 C -0.54 -15.32 9.50 30.94 0.29 -15.02 16 19 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.18 13.22 55.49 0.73 -25.45 16 22 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 C 0.51 5.24 6.98 -10.85 -0.08 5.17 16 27 O -0.49 -7.64 15.18 -16.69 -0.25 -7.89 16 28 H 0.08 0.63 7.53 -51.93 -0.39 0.24 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.14 8.14 -51.93 -0.42 -0.29 16 32 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 33 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.09 0.02 7.90 -51.93 -0.41 -0.39 16 35 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.40 2.04 8.47 -40.82 -0.35 1.70 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.40 4.19 8.47 -40.82 -0.35 3.84 16 43 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 44 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 45 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 394.26 15.07 5.94 5.94 Total: -1.00 -41.31 394.26 -8.95 -50.25 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -6.95 Total: -0.70 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: 0.23 Total: 5.27 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: -0.54 Total: -46.51 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.39 Total: -26.87 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -41.31 -8.95 -50.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001736673109.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.987 kcal (2) G-P(sol) polarization free energy of solvation -41.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds