Wall clock time and date at job start Wed Apr 1 2020 02:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46765 * 124.35294 * 2 1 4 4 C 1.54661 * 105.38357 * 162.85294 * 3 2 1 5 5 C 1.54631 * 101.68464 * 25.76826 * 4 3 2 6 6 H 1.08996 * 110.48647 * 216.30856 * 5 4 3 7 7 C 1.52997 * 110.48684 * 93.66426 * 5 4 3 8 8 C 1.50703 * 109.47136 * 178.77376 * 7 5 4 9 9 O 1.21284 * 119.99815 * 359.97438 * 8 7 5 10 10 N 1.34775 * 120.00430 * 180.02562 * 8 7 5 11 11 C 1.46496 * 120.00584 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47289 * 179.97438 * 11 10 8 13 13 N 1.46505 * 109.46911 * 179.97438 * 12 11 10 14 14 C 1.34771 * 119.99694 * 179.97438 * 13 12 11 15 15 O 1.21283 * 120.00427 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.99688 * 180.02562 * 14 13 12 17 17 S 1.81006 * 109.47017 * 180.02562 * 16 14 13 18 18 C 1.76200 * 99.99996 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99693 * 0.02562 * 18 17 16 20 20 C 1.38797 * 119.99980 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00107 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99882 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.46972 * 90.00715 * 22 20 18 24 24 H 1.48502 * 109.47142 * 210.00145 * 22 20 18 25 25 H 1.48495 * 109.47431 * 330.00678 * 22 20 18 26 26 C 1.34425 * 124.34592 * 180.29720 * 2 1 3 27 27 O 1.21281 * 124.94631 * 0.43075 * 26 2 1 28 28 H 1.09002 * 109.47391 * 179.72585 * 1 2 3 29 29 H 1.09001 * 109.46813 * 59.72641 * 1 2 3 30 30 H 1.09004 * 109.47041 * 299.72768 * 1 2 3 31 31 H 1.09002 * 110.24161 * 281.98194 * 3 2 1 32 32 H 1.08992 * 110.24467 * 43.98011 * 3 2 1 33 33 H 1.08990 * 111.19484 * 267.59523 * 4 3 2 34 34 H 1.09004 * 110.81740 * 143.77355 * 4 3 2 35 35 H 1.08998 * 109.47297 * 298.76952 * 7 5 4 36 36 H 1.08995 * 109.47108 * 58.77239 * 7 5 4 37 37 H 0.97005 * 119.99855 * 359.97438 * 10 8 7 38 38 H 1.08998 * 109.46669 * 299.99616 * 11 10 8 39 39 H 1.09001 * 109.46744 * 59.99327 * 11 10 8 40 40 H 1.08998 * 109.47297 * 299.99654 * 12 11 10 41 41 H 1.08995 * 109.47108 * 59.99941 * 12 11 10 42 42 H 0.97000 * 120.00154 * 0.02562 * 13 12 11 43 43 H 1.09004 * 109.47681 * 299.99972 * 16 14 13 44 44 H 1.09001 * 109.47479 * 60.00255 * 16 14 13 45 45 H 0.97003 * 120.00647 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2932 1.2117 0.0000 4 6 3.7011 0.7463 0.4396 5 6 3.6898 -0.7380 0.0063 6 1 4.2326 -1.3498 0.7267 7 6 4.2929 -0.8924 -1.3913 8 6 4.2982 -2.3489 -1.7781 9 8 3.8629 -3.1815 -1.0111 10 7 4.7876 -2.7264 -2.9758 11 6 4.7933 -4.1424 -3.3515 12 6 5.3962 -4.2967 -4.7492 13 7 5.4025 -5.7128 -5.1246 14 6 5.8910 -6.0901 -6.3227 15 8 6.3259 -5.2575 -7.0898 16 6 5.8968 -7.5467 -6.7091 17 16 6.6103 -7.7294 -8.3625 18 6 6.4970 -9.4774 -8.5533 19 1 6.0769 -10.0808 -7.7621 20 6 6.9466 -10.0787 -9.7206 21 7 7.4581 -9.3433 -10.6850 22 14 6.8258 -11.9318 -9.9231 23 1 5.5209 -12.2781 -10.5418 24 1 7.9291 -12.4073 -10.7960 25 1 6.9312 -12.5831 -8.5928 26 6 2.2234 -1.1099 -0.0058 27 8 1.7946 -2.2442 -0.0191 28 1 -0.3634 -1.0276 -0.0049 29 1 -0.3633 0.5181 -0.8875 30 1 -0.3633 0.5096 0.8925 31 1 2.3307 1.6428 -1.0004 32 1 1.8985 1.9382 0.7101 33 1 3.8269 0.8367 1.5185 34 1 4.4754 1.3014 -0.0899 35 1 3.6968 -0.3282 -2.1086 36 1 5.3147 -0.5130 -1.3900 37 1 5.1360 -2.0605 -3.5890 38 1 5.3893 -4.7062 -2.6340 39 1 3.7715 -4.5219 -3.3529 40 1 4.7998 -3.7329 -5.4665 41 1 6.4179 -3.9170 -4.7480 42 1 5.0543 -6.3788 -4.5112 43 1 6.4936 -8.1106 -5.9920 44 1 4.8752 -7.9266 -6.7099 45 1 7.7727 -9.7635 -11.5007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001736673109.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:19 Heat of formation + Delta-G solvation = -138.967157 kcal Electronic energy + Delta-G solvation = -26189.543095 eV Core-core repulsion = 22138.904061 eV Total energy + Delta-G solvation = -4050.639034 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.73602 -40.73850 -40.18871 -37.41382 -36.96328 -34.99690 -34.66452 -34.58639 -31.82514 -30.71357 -29.05966 -27.82356 -27.64633 -26.39710 -23.78221 -22.42731 -21.99450 -21.37970 -20.30728 -19.87140 -18.41728 -17.92851 -17.53935 -17.24864 -17.15748 -16.90928 -16.86429 -16.73024 -16.35715 -16.05993 -15.68213 -15.32053 -14.92829 -14.70816 -14.56498 -14.46438 -14.36141 -14.07982 -13.72366 -13.42342 -13.27668 -13.17617 -13.16994 -12.97156 -12.89437 -12.87137 -12.72427 -12.60622 -12.10124 -11.80892 -11.73902 -11.14658 -11.12054 -10.88748 -10.56241 -10.29144 -10.23721 -10.09353 -9.63475 -8.66858 -8.35177 -6.13073 1.24266 1.42234 1.44573 1.55555 1.56803 1.62101 1.72850 1.92330 2.15790 2.26890 2.57647 2.99083 3.31093 3.40425 3.54514 3.61766 3.77721 3.97957 3.98821 4.00523 4.17093 4.29453 4.31716 4.37023 4.45585 4.48956 4.51251 4.62339 4.69267 4.76114 4.80741 4.84213 4.86528 4.95496 5.13999 5.23473 5.28799 5.41847 5.43192 5.65779 6.18259 6.19555 6.40570 6.55849 7.06397 7.16966 7.26876 7.34699 8.74023 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.032565 B = 0.001431 C = 0.001408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.617365 B =19556.526302 C =19887.957374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.632 5.632 3 C 0.095 3.905 4 C -0.115 4.115 5 C -0.108 4.108 6 H 0.094 0.906 7 C -0.115 4.115 8 C 0.491 3.509 9 O -0.560 6.560 10 N -0.721 5.721 11 C 0.122 3.878 12 C 0.118 3.882 13 N -0.714 5.714 14 C 0.538 3.462 15 O -0.561 6.561 16 C -0.132 4.132 17 S -0.147 6.147 18 C -0.549 4.549 19 H 0.082 0.918 20 C 0.015 3.985 21 N -0.910 5.910 22 Si 0.998 3.002 23 H -0.268 1.268 24 H -0.277 1.277 25 H -0.259 1.259 26 C 0.496 3.504 27 O -0.565 6.565 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.130 0.870 35 H 0.117 0.883 36 H 0.150 0.850 37 H 0.418 0.582 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.417 0.583 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.133 27.361 25.545 38.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.367 5.367 3 C -0.026 4.026 4 C -0.153 4.153 5 C -0.130 4.130 6 H 0.112 0.888 7 C -0.155 4.155 8 C 0.278 3.722 9 O -0.437 6.437 10 N -0.376 5.376 11 C -0.004 4.004 12 C -0.006 4.006 13 N -0.369 5.369 14 C 0.324 3.676 15 O -0.439 6.439 16 C -0.283 4.283 17 S 0.080 5.920 18 C -0.697 4.697 19 H 0.100 0.900 20 C -0.190 4.190 21 N -0.547 5.547 22 Si 0.820 3.180 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.183 1.183 26 C 0.284 3.716 27 O -0.442 6.442 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.148 0.852 35 H 0.135 0.865 36 H 0.167 0.833 37 H 0.255 0.745 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.254 0.746 43 H 0.129 0.871 44 H 0.128 0.872 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.985 27.591 24.680 38.093 hybrid contribution -0.765 -2.390 0.396 2.541 sum -9.750 25.200 25.077 36.864 Atomic orbital electron populations 1.21619 0.78069 1.02457 1.03165 1.48469 1.07007 1.08071 1.73143 1.22454 0.90291 0.86154 1.03737 1.22801 0.97431 0.91372 1.03679 1.21744 0.92187 1.00343 0.98758 0.88775 1.21643 1.06466 0.91254 0.96092 1.21479 0.76732 0.92960 0.81043 1.90868 1.45800 1.55154 1.51843 1.45706 1.64516 1.08439 1.18958 1.21174 1.01132 0.83737 0.94308 1.21376 1.02116 0.82144 0.94976 1.45562 1.64142 1.09509 1.17659 1.19988 0.76495 0.89789 0.81345 1.90692 1.47145 1.54117 1.51936 1.23387 1.06288 0.96107 1.02545 1.85506 1.80904 1.10206 1.15386 1.23220 1.48070 0.92177 1.06216 0.89988 1.26099 0.93734 1.04884 0.94267 1.70171 1.39462 1.38146 1.06875 0.84964 0.78240 0.76088 0.78748 1.19360 1.20181 1.18342 1.21556 0.90830 0.84165 0.75095 1.90760 1.79270 1.23440 1.50754 0.92950 0.90351 0.90189 0.89005 0.88366 0.88914 0.85209 0.86515 0.83251 0.74498 0.90971 0.91984 0.90985 0.90463 0.74624 0.87108 0.87222 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.98 11.14 127.77 1.42 2.40 16 2 N -0.63 -8.05 3.33 -842.51 -2.81 -10.86 16 3 C 0.10 0.25 7.35 86.89 0.64 0.88 16 4 C -0.12 -0.14 6.72 31.72 0.21 0.07 16 5 C -0.11 -1.23 2.57 -10.80 -0.03 -1.26 16 6 H 0.09 1.43 8.02 -2.39 -0.02 1.41 16 7 C -0.11 -0.88 5.12 29.85 0.15 -0.73 16 8 C 0.49 9.06 7.61 87.66 0.67 9.73 16 9 O -0.56 -16.92 13.68 18.23 0.25 -16.68 16 10 N -0.72 -10.37 5.56 -463.07 -2.57 -12.94 16 11 C 0.12 2.18 5.79 86.38 0.50 2.68 16 12 C 0.12 2.37 5.79 86.38 0.50 2.87 16 13 N -0.71 -17.61 5.56 -463.07 -2.57 -20.19 16 14 C 0.54 19.43 7.85 87.66 0.69 20.12 16 15 O -0.56 -25.16 15.86 -3.04 -0.05 -25.21 16 16 C -0.13 -5.21 6.16 71.24 0.44 -4.78 16 17 S -0.15 -8.15 20.57 -56.49 -1.16 -9.31 16 18 C -0.55 -31.50 9.50 67.95 0.65 -30.85 16 19 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 20 C 0.02 0.86 5.49 84.86 0.47 1.33 16 21 N -0.91 -55.87 13.22 21.65 0.29 -55.58 16 22 Si 1.00 43.84 29.55 68.60 2.03 45.86 16 23 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 24 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 25 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 26 C 0.50 10.33 6.98 87.90 0.61 10.94 16 27 O -0.56 -18.97 15.18 18.24 0.28 -18.69 16 28 H 0.05 0.90 7.53 -2.39 -0.02 0.88 16 29 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.09 -0.08 8.14 -2.39 -0.02 -0.10 16 32 H 0.10 -0.08 8.14 -2.39 -0.02 -0.10 16 33 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 34 H 0.13 -0.69 7.90 -2.38 -0.02 -0.71 16 35 H 0.12 0.45 8.14 -2.39 -0.02 0.44 16 36 H 0.15 -0.07 8.14 -2.39 -0.02 -0.09 16 37 H 0.42 3.22 8.47 -92.70 -0.79 2.43 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.08 1.55 8.14 -2.39 -0.02 1.54 16 42 H 0.42 7.92 8.47 -92.71 -0.79 7.13 16 43 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 44 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 45 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -97.08 394.26 0.04 -97.04 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -0.55 Total: 13.14 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: 6.92 Total: 13.42 kcal Atomic # 7 Polarization: -91.90 SS G_CDS: -7.67 Total: -99.57 kcal Atomic # 8 Polarization: -61.06 SS G_CDS: 0.48 Total: -60.58 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -8.15 SS G_CDS: -1.16 Total: -9.31 kcal Total: -97.08 0.04 -97.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001736673109.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.927 kcal (2) G-P(sol) polarization free energy of solvation -97.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds