Wall clock time and date at job start Wed Apr 1 2020 02:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47393 * 2 1 4 4 C 1.53002 * 109.46954 * 240.00173 * 2 1 3 5 5 N 1.46496 * 109.47425 * 185.00296 * 4 2 1 6 6 C 1.34777 * 120.00266 * 180.02562 * 5 4 2 7 7 O 1.21274 * 120.00135 * 0.27234 * 6 5 4 8 8 C 1.50706 * 119.99766 * 179.97438 * 6 5 4 9 9 S 1.81003 * 109.46851 * 179.97438 * 8 6 5 10 10 C 1.76196 * 99.99843 * 180.02562 * 9 8 6 11 11 H 1.07998 * 120.00031 * 359.97438 * 10 9 8 12 12 C 1.38802 * 119.99637 * 180.02562 * 10 9 8 13 13 N 1.31628 * 120.00514 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99567 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47216 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46911 * 120.00106 * 14 12 10 17 17 H 1.48506 * 109.47215 * 239.99864 * 14 12 10 18 18 N 1.46501 * 109.47155 * 120.00489 * 2 1 3 19 19 C 1.34769 * 120.00076 * 274.99736 * 18 2 1 20 20 O 1.21283 * 120.00244 * 359.97438 * 19 18 2 21 21 C 1.50696 * 120.00170 * 179.97438 * 19 18 2 22 22 H 1.09004 * 109.40362 * 60.17345 * 21 19 18 23 23 C 1.53076 * 109.40166 * 180.02562 * 21 19 18 24 24 C 1.53344 * 108.42283 * 169.03262 * 23 21 19 25 25 C 1.52925 * 108.67228 * 292.46447 * 24 23 21 26 26 N 1.45755 * 110.48470 * 50.75907 * 25 24 23 27 27 C 1.33350 * 124.10909 * 340.91995 * 26 25 24 28 28 O 1.21276 * 118.24610 * 182.22215 * 27 26 25 29 29 H 1.09001 * 109.47013 * 299.99467 * 1 2 3 30 30 H 1.08997 * 109.47489 * 59.99791 * 1 2 3 31 31 H 1.09008 * 109.47207 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46930 * 65.00118 * 4 2 1 33 33 H 1.09000 * 109.47312 * 305.00062 * 4 2 1 34 34 H 0.96999 * 119.99691 * 359.97438 * 5 4 2 35 35 H 1.09000 * 109.47161 * 299.99737 * 8 6 5 36 36 H 1.09001 * 109.46740 * 59.99879 * 8 6 5 37 37 H 0.96995 * 120.00407 * 179.97438 * 13 12 10 38 38 H 0.97003 * 119.99709 * 94.99812 * 18 2 1 39 39 H 1.08998 * 109.67101 * 288.75902 * 23 21 19 40 40 H 1.08993 * 109.67419 * 49.26159 * 23 21 19 41 41 H 1.08999 * 109.60822 * 52.22433 * 24 23 21 42 42 H 1.09000 * 109.60314 * 172.54978 * 24 23 21 43 43 H 1.09003 * 109.29820 * 171.06538 * 25 24 23 44 44 H 1.09000 * 109.30213 * 290.64771 * 25 24 23 45 45 H 0.97003 * 117.94303 * 160.92659 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8265 -1.1907 6 6 4.1730 -1.4284 -2.1913 7 8 3.5703 -1.8785 -3.1427 8 6 5.6750 -1.5361 -2.1312 9 16 6.2782 -2.3894 -3.6091 10 6 8.0099 -2.3766 -3.2842 11 1 8.3862 -1.9234 -2.3791 12 6 8.8905 -2.9482 -4.1923 13 7 8.4321 -3.4992 -5.2962 14 14 10.7266 -2.9340 -3.8482 15 1 10.9818 -2.2590 -2.5503 16 1 11.2295 -4.3299 -3.7869 17 1 11.4280 -2.2023 -4.9336 18 7 2.0183 -0.6907 1.1961 19 6 2.1471 -0.0185 2.3571 20 8 1.8592 1.1584 2.4116 21 6 2.6489 -0.7291 3.5876 22 1 3.6492 -1.1186 3.3983 23 6 2.6993 0.2557 4.7585 24 6 2.9429 -0.5371 6.0483 25 6 1.7092 -1.3933 6.3371 26 7 1.3340 -2.1619 5.1569 27 6 1.7268 -1.8678 3.9170 28 8 1.3175 -2.5567 3.0067 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.7516 -0.1582 -2.1370 33 1 1.6053 -1.7198 -1.2953 34 1 3.9824 -0.4623 -0.4320 35 1 6.1093 -0.5374 -2.0851 36 1 5.9635 -2.0991 -1.2436 37 1 9.0475 -3.8983 -5.9309 38 1 2.2490 -1.6319 1.1524 39 1 3.5116 0.9662 4.6056 40 1 1.7523 0.7905 4.8291 41 1 3.8136 -1.1808 5.9231 42 1 3.1139 0.1527 6.8747 43 1 1.9290 -2.0768 7.1573 44 1 0.8795 -0.7456 6.6205 45 1 0.7627 -2.9359 5.2813 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737550259.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:30 Heat of formation + Delta-G solvation = -122.165722 kcal Electronic energy + Delta-G solvation = -27480.077161 eV Core-core repulsion = 23430.166691 eV Total energy + Delta-G solvation = -4049.910469 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.38369 -39.68778 -38.95385 -37.13484 -36.36882 -33.72645 -33.51760 -32.42529 -31.47883 -30.18985 -29.32461 -26.05192 -25.60087 -25.30417 -23.31068 -22.14238 -20.85470 -20.32593 -19.65386 -18.17647 -17.81947 -17.54058 -16.92684 -16.68334 -16.22303 -15.92570 -15.44967 -15.12403 -14.93369 -14.80328 -14.69692 -14.36272 -14.13512 -14.00424 -13.84177 -13.45082 -13.04693 -12.86770 -12.78642 -12.56426 -12.48719 -12.19678 -11.94454 -11.89039 -11.76725 -11.57348 -11.21097 -11.06949 -11.01641 -10.75457 -10.36504 -10.13656 -9.80590 -9.64042 -9.45050 -9.30578 -9.07659 -8.91158 -8.22575 -6.49409 -6.21437 -3.91785 1.93054 2.25464 2.74592 2.90319 3.04791 3.10753 3.21651 3.28445 3.33118 3.71981 3.92489 4.05061 4.14444 4.18100 4.20512 4.44905 4.60925 4.71213 4.73799 4.90263 5.00702 5.05471 5.13768 5.15711 5.16637 5.25468 5.42701 5.43175 5.49348 5.56731 5.67453 5.72333 5.81437 5.89409 5.99567 6.14022 6.18688 6.24951 6.58028 6.70178 7.23903 7.60082 7.63328 7.68480 7.91130 8.35706 8.60534 9.23962 10.86044 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.012993 B = 0.002294 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.462581 B =12203.303913 C =13521.609242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.131 3.869 3 H 0.096 0.904 4 C 0.113 3.887 5 N -0.739 5.739 6 C 0.532 3.468 7 O -0.516 6.516 8 C -0.153 4.153 9 S -0.060 6.060 10 C -0.534 4.534 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 N -0.708 5.708 19 C 0.533 3.467 20 O -0.536 6.536 21 C -0.129 4.129 22 H 0.133 0.867 23 C -0.105 4.105 24 C -0.139 4.139 25 C 0.106 3.894 26 N -0.715 5.715 27 C 0.529 3.471 28 O -0.541 6.541 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.398 0.602 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.268 0.732 38 H 0.413 0.587 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.832 7.218 26.746 31.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.026 3.974 3 H 0.114 0.886 4 C -0.011 4.011 5 N -0.394 5.394 6 C 0.318 3.682 7 O -0.390 6.390 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.683 4.683 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 N -0.362 5.362 19 C 0.317 3.683 20 O -0.413 6.413 21 C -0.154 4.154 22 H 0.151 0.849 23 C -0.143 4.143 24 C -0.177 4.177 25 C -0.018 4.018 26 N -0.367 5.367 27 C 0.315 3.685 28 O -0.419 6.419 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.232 0.768 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.250 0.750 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.110 0.890 43 H 0.099 0.901 44 H 0.087 0.913 45 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -16.086 7.043 24.490 30.135 hybrid contribution 2.046 -0.097 1.860 2.767 sum -14.040 6.946 26.350 30.654 Atomic orbital electron populations 1.22080 0.94024 1.02871 1.02780 1.21272 0.95110 0.97644 0.83364 0.88642 1.21616 0.81084 1.01488 0.96943 1.45976 1.06818 1.62010 1.24608 1.20311 0.89505 0.76735 0.81653 1.90707 1.69873 1.46087 1.32317 1.23530 0.93532 1.05667 1.07655 1.85410 1.04609 1.73062 1.20245 1.22903 0.91527 1.44185 1.09659 0.90901 1.24999 0.99601 0.94577 0.94468 1.70025 1.35307 1.35574 1.09363 0.86114 0.82997 0.77970 0.78384 1.19631 1.20582 1.20566 1.46166 1.66107 1.14919 1.08977 1.19766 0.77719 0.86857 0.83978 1.90722 1.50077 1.15645 1.84824 1.21509 1.01562 0.96080 0.96202 0.84940 1.21521 1.04895 0.96768 0.91117 1.21938 0.97680 0.99274 0.98826 1.21479 0.97832 0.95301 0.87160 1.45363 1.52514 1.32386 1.06481 1.19556 0.81128 0.85039 0.82817 1.90788 1.56014 1.50892 1.44158 0.91841 0.91127 0.91822 0.89905 0.90783 0.76847 0.89226 0.89283 0.92235 0.74995 0.89549 0.89874 0.90562 0.89005 0.90103 0.91279 0.76022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.48 37.16 0.35 -1.14 16 2 C 0.13 1.32 2.73 -67.93 -0.19 1.13 16 3 H 0.10 1.02 7.58 -51.93 -0.39 0.62 16 4 C 0.11 1.33 5.23 -4.04 -0.02 1.31 16 5 N -0.74 -9.94 5.39 -60.29 -0.32 -10.27 16 6 C 0.53 9.95 7.85 -10.98 -0.09 9.86 16 7 O -0.52 -11.74 15.86 5.56 0.09 -11.66 16 8 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.53 -15.25 9.50 30.94 0.29 -14.95 16 11 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 12 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 13 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 14 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 15 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 18 N -0.71 -7.09 4.00 -53.81 -0.22 -7.31 16 19 C 0.53 5.48 7.03 -10.99 -0.08 5.40 16 20 O -0.54 -6.89 15.46 5.55 0.09 -6.81 16 21 C -0.13 -0.96 2.78 -93.14 -0.26 -1.22 16 22 H 0.13 0.77 8.14 -51.93 -0.42 0.35 16 23 C -0.11 -0.59 4.78 -26.51 -0.13 -0.72 16 24 C -0.14 -0.42 6.02 -26.59 -0.16 -0.58 16 25 C 0.11 0.30 7.17 -4.48 -0.03 0.27 16 26 N -0.72 -3.96 5.45 -61.38 -0.33 -4.29 16 27 C 0.53 4.49 7.28 -11.87 -0.09 4.40 16 28 O -0.54 -6.40 15.53 5.56 0.09 -6.32 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.40 4.46 8.14 -40.82 -0.33 4.12 16 35 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 36 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 37 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.41 4.25 7.23 -40.82 -0.30 3.96 16 39 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.58 7.73 -51.93 -0.40 0.17 16 41 H 0.08 0.22 8.12 -51.93 -0.42 -0.20 16 42 H 0.09 0.14 8.14 -51.93 -0.42 -0.29 16 43 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 44 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 45 H 0.40 1.92 8.80 -40.82 -0.36 1.56 16 LS Contribution 389.28 15.07 5.87 5.87 Total: -1.00 -37.67 389.28 -8.33 -46.00 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -6.82 Total: 4.84 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -0.26 Total: 2.88 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: -0.14 Total: -47.36 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: 0.26 Total: -24.78 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.67 -8.33 -46.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737550259.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.165 kcal (2) G-P(sol) polarization free energy of solvation -37.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds