Wall clock time and date at job start Wed Apr 1 2020 02:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47393 * 2 1 4 4 C 1.53002 * 109.46954 * 240.00173 * 2 1 3 5 5 N 1.46496 * 109.47425 * 185.00296 * 4 2 1 6 6 C 1.34777 * 120.00266 * 180.02562 * 5 4 2 7 7 O 1.21274 * 120.00135 * 0.27234 * 6 5 4 8 8 C 1.50706 * 119.99766 * 179.97438 * 6 5 4 9 9 S 1.81003 * 109.46851 * 179.97438 * 8 6 5 10 10 C 1.76196 * 99.99843 * 180.02562 * 9 8 6 11 11 H 1.07998 * 120.00031 * 359.97438 * 10 9 8 12 12 C 1.38802 * 119.99637 * 180.02562 * 10 9 8 13 13 N 1.31628 * 120.00514 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99567 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47216 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46911 * 120.00106 * 14 12 10 17 17 H 1.48506 * 109.47215 * 239.99864 * 14 12 10 18 18 N 1.46501 * 109.47155 * 120.00489 * 2 1 3 19 19 C 1.34769 * 120.00076 * 274.99736 * 18 2 1 20 20 O 1.21283 * 120.00244 * 359.97438 * 19 18 2 21 21 C 1.50696 * 120.00170 * 179.97438 * 19 18 2 22 22 H 1.09004 * 109.40362 * 60.17345 * 21 19 18 23 23 C 1.53076 * 109.40166 * 180.02562 * 21 19 18 24 24 C 1.53344 * 108.42283 * 169.03262 * 23 21 19 25 25 C 1.52925 * 108.67228 * 292.46447 * 24 23 21 26 26 N 1.45755 * 110.48470 * 50.75907 * 25 24 23 27 27 C 1.33350 * 124.10909 * 340.91995 * 26 25 24 28 28 O 1.21276 * 118.24610 * 182.22215 * 27 26 25 29 29 H 1.09001 * 109.47013 * 299.99467 * 1 2 3 30 30 H 1.08997 * 109.47489 * 59.99791 * 1 2 3 31 31 H 1.09008 * 109.47207 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46930 * 65.00118 * 4 2 1 33 33 H 1.09000 * 109.47312 * 305.00062 * 4 2 1 34 34 H 0.96999 * 119.99691 * 359.97438 * 5 4 2 35 35 H 1.09000 * 109.47161 * 299.99737 * 8 6 5 36 36 H 1.09001 * 109.46740 * 59.99879 * 8 6 5 37 37 H 0.96995 * 120.00407 * 179.97438 * 13 12 10 38 38 H 0.97003 * 119.99709 * 94.99812 * 18 2 1 39 39 H 1.08998 * 109.67101 * 288.75902 * 23 21 19 40 40 H 1.08993 * 109.67419 * 49.26159 * 23 21 19 41 41 H 1.08999 * 109.60822 * 52.22433 * 24 23 21 42 42 H 1.09000 * 109.60314 * 172.54978 * 24 23 21 43 43 H 1.09003 * 109.29820 * 171.06538 * 25 24 23 44 44 H 1.09000 * 109.30213 * 290.64771 * 25 24 23 45 45 H 0.97003 * 117.94303 * 160.92659 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8265 -1.1907 6 6 4.1730 -1.4284 -2.1913 7 8 3.5703 -1.8785 -3.1427 8 6 5.6750 -1.5361 -2.1312 9 16 6.2782 -2.3894 -3.6091 10 6 8.0099 -2.3766 -3.2842 11 1 8.3862 -1.9234 -2.3791 12 6 8.8905 -2.9482 -4.1923 13 7 8.4321 -3.4992 -5.2962 14 14 10.7266 -2.9340 -3.8482 15 1 10.9818 -2.2590 -2.5503 16 1 11.2295 -4.3299 -3.7869 17 1 11.4280 -2.2023 -4.9336 18 7 2.0183 -0.6907 1.1961 19 6 2.1471 -0.0185 2.3571 20 8 1.8592 1.1584 2.4116 21 6 2.6489 -0.7291 3.5876 22 1 3.6492 -1.1186 3.3983 23 6 2.6993 0.2557 4.7585 24 6 2.9429 -0.5371 6.0483 25 6 1.7092 -1.3933 6.3371 26 7 1.3340 -2.1619 5.1569 27 6 1.7268 -1.8678 3.9170 28 8 1.3175 -2.5567 3.0067 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.7516 -0.1582 -2.1370 33 1 1.6053 -1.7198 -1.2953 34 1 3.9824 -0.4623 -0.4320 35 1 6.1093 -0.5374 -2.0851 36 1 5.9635 -2.0991 -1.2436 37 1 9.0475 -3.8983 -5.9309 38 1 2.2490 -1.6319 1.1524 39 1 3.5116 0.9662 4.6056 40 1 1.7523 0.7905 4.8291 41 1 3.8136 -1.1808 5.9231 42 1 3.1139 0.1527 6.8747 43 1 1.9290 -2.0768 7.1573 44 1 0.8795 -0.7456 6.6205 45 1 0.7627 -2.9359 5.2813 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001737550259.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:29 Heat of formation + Delta-G solvation = -152.338666 kcal Electronic energy + Delta-G solvation = -27481.385558 eV Core-core repulsion = 23430.166691 eV Total energy + Delta-G solvation = -4051.218866 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.04248 -40.78874 -40.05176 -37.81209 -37.24613 -34.84115 -34.57722 -34.16308 -32.34866 -30.97873 -30.51936 -27.74590 -26.90202 -26.04399 -23.81291 -22.89825 -21.79178 -21.64489 -20.19234 -19.82450 -18.75151 -18.20434 -17.86362 -17.66184 -17.41360 -17.01255 -16.87557 -16.45407 -16.07876 -15.86331 -15.60675 -15.22191 -15.09787 -14.85152 -14.67628 -14.49779 -14.34585 -14.22666 -13.90905 -13.59887 -13.27179 -13.15788 -13.04620 -12.97332 -12.90799 -12.58661 -12.40223 -12.26852 -12.10391 -11.94357 -11.70613 -11.15621 -11.09837 -11.01089 -10.83818 -10.27187 -10.21775 -10.16848 -10.08359 -8.66425 -8.34457 -6.12406 1.23980 1.26524 1.41890 1.46804 1.54878 1.58381 1.59113 2.06158 2.25864 2.29153 2.34122 2.99803 3.31761 3.41650 3.48478 3.54169 3.74185 3.86030 3.93577 4.02409 4.15731 4.21140 4.25901 4.29255 4.50144 4.50197 4.53567 4.67435 4.71492 4.75884 4.84250 4.91384 5.05305 5.08923 5.17293 5.32065 5.34716 5.42536 5.43499 5.75163 6.20429 6.20503 6.40663 6.43583 7.05228 7.06965 7.12479 7.18987 8.74998 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.012993 B = 0.002294 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.462581 B =12203.303913 C =13521.609242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.140 3.860 3 H 0.095 0.905 4 C 0.117 3.883 5 N -0.713 5.713 6 C 0.535 3.465 7 O -0.562 6.562 8 C -0.130 4.130 9 S -0.150 6.150 10 C -0.544 4.544 11 H 0.083 0.917 12 C 0.012 3.988 13 N -0.912 5.912 14 Si 1.000 3.000 15 H -0.256 1.256 16 H -0.274 1.274 17 H -0.275 1.275 18 N -0.707 5.707 19 C 0.529 3.471 20 O -0.564 6.564 21 C -0.127 4.127 22 H 0.151 0.849 23 C -0.102 4.102 24 C -0.134 4.134 25 C 0.100 3.900 26 N -0.706 5.706 27 C 0.524 3.476 28 O -0.583 6.583 29 H 0.054 0.946 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.412 0.588 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.271 0.729 38 H 0.412 0.588 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.113 0.887 43 H 0.107 0.893 44 H 0.077 0.923 45 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.806 8.028 29.804 33.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.035 3.965 3 H 0.113 0.887 4 C -0.007 4.007 5 N -0.367 5.367 6 C 0.321 3.679 7 O -0.440 6.440 8 C -0.281 4.281 9 S 0.077 5.923 10 C -0.692 4.692 11 H 0.101 0.899 12 C -0.193 4.193 13 N -0.548 5.548 14 Si 0.821 3.179 15 H -0.180 1.180 16 H -0.199 1.199 17 H -0.200 1.200 18 N -0.360 5.360 19 C 0.315 3.685 20 O -0.443 6.443 21 C -0.150 4.150 22 H 0.168 0.832 23 C -0.140 4.140 24 C -0.171 4.171 25 C -0.023 4.023 26 N -0.357 5.357 27 C 0.310 3.690 28 O -0.464 6.464 29 H 0.073 0.927 30 H 0.104 0.896 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.249 0.751 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.080 0.920 38 H 0.250 0.750 39 H 0.106 0.894 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.131 0.869 43 H 0.125 0.875 44 H 0.095 0.905 45 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -15.076 7.880 27.643 32.458 hybrid contribution 1.595 -0.292 1.028 1.920 sum -13.482 7.588 28.671 32.578 Atomic orbital electron populations 1.22029 0.93306 1.02807 1.03056 1.21163 0.95531 0.97165 0.82661 0.88731 1.21695 0.79518 1.01543 0.97982 1.45696 1.07622 1.59929 1.23441 1.20050 0.88916 0.76889 0.82021 1.90699 1.70407 1.48488 1.34398 1.23371 0.94602 1.05809 1.04319 1.85590 1.05923 1.75027 1.25782 1.23228 0.91606 1.44273 1.10114 0.89890 1.26144 1.05267 0.93835 0.94029 1.70187 1.37343 1.36655 1.10626 0.84892 0.75831 0.78280 0.78848 1.17952 1.19944 1.19998 1.46206 1.65897 1.14821 1.09047 1.20245 0.77042 0.86588 0.84615 1.90706 1.51376 1.16923 1.85321 1.21556 1.01953 0.96042 0.95472 0.83197 1.21525 1.04161 0.96599 0.91760 1.21955 0.97835 0.99388 0.97931 1.21754 0.98164 0.95809 0.86540 1.45432 1.51491 1.32360 1.06421 1.19742 0.81115 0.84910 0.83277 1.90767 1.57749 1.52360 1.45564 0.92734 0.89638 0.92050 0.89732 0.91253 0.75121 0.87277 0.87137 0.92005 0.75008 0.89407 0.91407 0.89996 0.86910 0.87528 0.90467 0.75607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.48 71.98 0.68 -2.09 16 2 C 0.14 2.69 2.73 44.99 0.12 2.81 16 3 H 0.09 1.90 7.58 -2.39 -0.02 1.89 16 4 C 0.12 2.65 5.23 86.38 0.45 3.10 16 5 N -0.71 -18.25 5.39 -463.06 -2.49 -20.74 16 6 C 0.54 19.74 7.85 87.66 0.69 20.43 16 7 O -0.56 -25.99 15.86 -3.01 -0.05 -26.04 16 8 C -0.13 -5.13 6.16 71.24 0.44 -4.69 16 9 S -0.15 -8.36 20.57 -56.49 -1.16 -9.53 16 10 C -0.54 -31.04 9.50 67.96 0.65 -30.39 16 11 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 12 C 0.01 0.68 5.49 84.86 0.47 1.14 16 13 N -0.91 -56.12 13.22 21.65 0.29 -55.83 16 14 Si 1.00 43.53 29.55 68.60 2.03 45.56 16 15 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 16 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 17 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 18 N -0.71 -13.63 4.00 -442.55 -1.77 -15.40 16 19 C 0.53 10.49 7.03 87.66 0.62 11.10 16 20 O -0.56 -14.22 15.46 -3.04 -0.05 -14.26 16 21 C -0.13 -1.72 2.78 -12.43 -0.03 -1.75 16 22 H 0.15 1.46 8.14 -2.38 -0.02 1.45 16 23 C -0.10 -0.98 4.78 30.73 0.15 -0.83 16 24 C -0.13 -0.41 6.02 30.68 0.18 -0.23 16 25 C 0.10 0.29 7.17 86.49 0.62 0.91 16 26 N -0.71 -6.65 5.45 -467.31 -2.55 -9.19 16 27 C 0.52 8.37 7.28 87.71 0.64 9.01 16 28 O -0.58 -13.69 15.53 -3.02 -0.05 -13.74 16 29 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 33 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.41 8.38 8.14 -92.71 -0.75 7.62 16 35 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 36 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 37 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 38 H 0.41 8.23 7.23 -92.71 -0.67 7.56 16 39 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.07 0.87 7.73 -2.39 -0.02 0.85 16 41 H 0.08 0.21 8.12 -2.39 -0.02 0.19 16 42 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 43 H 0.11 -0.17 8.14 -2.39 -0.02 -0.19 16 44 H 0.08 0.15 8.14 -2.39 -0.02 0.13 16 45 H 0.41 3.32 8.80 -92.71 -0.82 2.51 16 Total: -1.00 -84.16 389.28 -1.34 -85.50 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: -1.20 Total: 25.16 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 5.67 Total: 8.52 kcal Atomic # 7 Polarization: -94.64 SS G_CDS: -6.53 Total: -101.17 kcal Atomic # 8 Polarization: -53.90 SS G_CDS: -0.14 Total: -54.04 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.53 kcal Total: -84.16 -1.34 -85.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737550259.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.842 kcal (2) G-P(sol) polarization free energy of solvation -84.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds